Dear All,

I have a functional and a T1 registered, but they are not in anatomical coordinates.

I put the anatomical in the desired position by using tkregister2.

I was hoping to use the output reg file to re-position the functional as well.

I got an unexpected output!
The functional looks reoriented BUT, coronal is horizontal, horizontal is coronal and sagittal is 90deg rotated.

How did it happen and how can I fix the problem?

Thanks,

Ilaria