Yes, some of the commands inside recon-all do not support a field of view over 256mm, which yours apparently is. I keep meaning to fix this, but we only see it once a year or so and I forget. In any event, just add -cw256 to the command line.

On 9/6/2022 10:51 PM, Ellie Shaw wrote:

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Hi there,

I am attempting to perform the recon-all command for my T1 nii file.

When I run the recon-all command I get the following error message:

ERROR! FOV=288.000 > 256

Include the flag -cw256 with recon-all!

Inspect orig.mgz to ensure the head is fully visible.

I am seeking some support to overcome this issue - I understand this would include the flag -cw256.

Freesurfer version: freesurfer-darwin-macOS-7.2.0-20210713-aa8f76b

Platform: OSX 7.2.0

Recon-all.log file attached below

Thank you in advance!

Kind regards,

Ellie
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