Di 19. Apr 14:47:47 CEST 2022 cd /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w setenv SUBJECTS_DIR /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF /usr/local/freesurfer/7.2.0/bin/recon-all -i indi3K8D6_01_T1w.mgz -subjid indi3K8D6_01_T1w subjid indi3K8D6_01_T1w setenv SUBJECTS_DIR /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF FREESURFER_HOME /usr/local/freesurfer/7.2.0 Actual FREESURFER_HOME /usr/local/freesurfer/7.2.0 build-stamp.txt: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 63001 maxlocks unlimited maxsignal 63001 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 15G 4,6G 3,8G 438M 7,1G 10G Swap: 4,0G 392M 3,6G ######################################## program versions used 7.2.0 (freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:47:47-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /usr/local/freesurfer/7.2.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/freesurfer/7.2.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w mri_convert /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig/001.mgz mri_convert /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig/001.mgz reading from /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w.mgz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.996734, 0.0435556, -0.068002) j_ras = (0.0436566, 0.999047, -3.1765e-08) k_ras = (-0.0679372, 0.00296877, 0.997685) writing to /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig/001.mgz... @#@FSTIME 2022:04:19:14:47:47 mri_convert N 2 e 1.89 S 0.00 U 1.88 P 99% M 30116 F 0 R 6093 W 0 c 6 w 1 I 0 O 23064 L 00 1 00 @#@FSLOADPOST 2022:04:19:14:47:49 mri_convert N 2 02 1 01 Started at Di 19. Apr 14:47:47 CEST 2022 Ended at Di 19. Apr 14:47:49 CEST 2022 #@#%# recon-all-run-time-hours 0,001 recon-all -s indi3K8D6_01_T1w finished without error at Di 19. Apr 14:47:49 CEST 2022 #New# invocation of recon-all Di 19. Apr 14:48:36 CEST 2022 cd /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w setenv SUBJECTS_DIR /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF /usr/local/freesurfer/7.2.0/bin/recon-all -all -subjid indi3K8D6_01_T1w -qcache -3T subjid indi3K8D6_01_T1w setenv SUBJECTS_DIR /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF FREESURFER_HOME /usr/local/freesurfer/7.2.0 Actual FREESURFER_HOME /usr/local/freesurfer/7.2.0 build-stamp.txt: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 63001 maxlocks unlimited maxsignal 63001 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 15G 4,6G 3,8G 429M 7,1G 10G Swap: 4,0G 392M 3,6G ######################################## program versions used 7.2.0 (freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-12:48:36-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /usr/local/freesurfer/7.2.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/freesurfer/7.2.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# MotionCor Di 19. Apr 14:48:36 CEST 2022 Found 1 runs /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig/001.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/rawavg.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w mri_convert /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/rawavg.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig.mgz --conform mri_convert /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/rawavg.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig.mgz --conform reading from /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/rawavg.mgz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.996734, 0.0435556, -0.068002) j_ras = (0.0436566, 0.999047, -3.1765e-08) k_ras = (-0.0679372, 0.00296877, 0.997685) changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram 0 3059 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig.mgz... @#@FSTIME 2022:04:19:14:48:39 mri_convert N 3 e 2.91 S 0.01 U 2.90 P 100% M 41444 F 0 R 17129 W 0 c 13 w 1 I 0 O 10808 L 01 1 00 @#@FSLOADPOST 2022:04:19:14:48:42 mri_convert N 3 01 1 00 mri_add_xform_to_header -c /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/transforms/talairach.xfm /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2022:04:19:14:48:42 mri_add_xform_to_header N 4 e 1.08 S 0.00 U 1.06 P 98% M 23284 F 0 R 4585 W 0 c 2 w 3 I 0 O 10808 L 01 1 00 @#@FSLOADPOST 2022:04:19:14:48:43 mri_add_xform_to_header N 4 03 1 01 #-------------------------------------------- #@# Talairach Di 19. Apr 14:48:43 CEST 2022 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri /usr/local/freesurfer/7.2.0/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.2.0 Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux Di 19. Apr 14:48:43 CEST 2022 tmpdir is ./tmp.mri_nu_correct.mni.30379 cd /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.30379/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_convert ./tmp.mri_nu_correct.mni.30379/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.30379/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.30379/nu0.mgz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.86673e-09, 0) j_ras = (-7.45058e-09, 4.65661e-10, -1) k_ras = (8.58563e-10, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Di 19. Apr 14:51:14 CEST 2022 mri_nu_correct.mni done @#@FSTIME 2022:04:19:14:48:43 mri_nu_correct.mni N 12 e 150.32 S 0.12 U 150.20 P 100% M 507228 F 0 R 145714 W 0 c 141 w 93 I 0 O 20192 L 03 1 01 @#@FSLOADPOST 2022:04:19:14:51:14 mri_nu_correct.mni N 12 42 1 16 talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm --atlas 3T18yoSchwartzReactN32_as_orig talairach_avi log file is transforms/talairach_avi.log... Started at Di 19. Apr 14:51:14 CEST 2022 Ended at Di 19. Apr 14:51:42 CEST 2022 talairach_avi done @#@FSTIME 2022:04:19:14:51:14 talairach_avi N 6 e 28.74 S 0.55 U 22.18 P 79% M 255636 F 0 R 396366 W 0 c 59 w 148 I 0 O 295328 L 42 1 16 @#@FSLOADPOST 2022:04:19:14:51:42 talairach_avi N 6 47 1 18 cp transforms/talairach.auto.xfm transforms/talairach.xfm lta_convert --src orig.mgz --trg /usr/local/freesurfer/7.2.0/average/mni305.cor.mgz --inxfm transforms/talairach.xfm --outlta transforms/talairach.xfm.lta --subject fsaverage --ltavox2vox 7.2.0 --src: orig.mgz src image (geometry). --trg: /usr/local/freesurfer/7.2.0/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.xfm input MNI/XFM transform. --outlta: transforms/talairach.xfm.lta output LTA. --s: fsaverage subject name --ltavox2vox: output LTA as VOX_TO_VOX transform. LTA read, type : 1 2.05179 0.05162 -0.55580 -70.37419; 0.39318 1.33912 0.29612 -34.92594; 1.64442 -0.32984 1.32958 -73.88370; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.xfm.lta... lta_convert successful. #-------------------------------------------- #@# Talairach Failure Detection Di 19. Apr 14:51:45 CEST 2022 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Command exited with non-zero status 1 @#@FSTIME 2022:04:19:14:51:45 talairach_afd N 4 e 0.00 S 0.00 U 0.00 P 100% M 5612 F 0 R 204 W 0 c 1 w 1 I 0 O 0 L 46 1 18 @#@FSLOADPOST 2022:04:19:14:51:45 talairach_afd N 4 46 1 18 Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string. See: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach INFO: Trying MINC mritotal to perform Talairach align... #-------------------------------------------- #@# Talairach Di 19. Apr 14:51:45 CEST 2022 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri /usr/local/freesurfer/7.2.0/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.2.0 Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux Di 19. Apr 14:51:45 CEST 2022 tmpdir is ./tmp.mri_nu_correct.mni.30902 cd /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.30902/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_convert ./tmp.mri_nu_correct.mni.30902/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.30902/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.30902/nu0.mgz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.86673e-09, 0) j_ras = (-7.45058e-09, 4.65661e-10, -1) k_ras = (8.58563e-10, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Di 19. Apr 14:54:17 CEST 2022 mri_nu_correct.mni done @#@FSTIME 2022:04:19:14:51:45 mri_nu_correct.mni N 12 e 151.94 S 0.14 U 151.78 P 99% M 506396 F 0 R 145666 W 0 c 145 w 100 I 0 O 20192 L 46 1 18 @#@FSLOADPOST 2022:04:19:14:54:17 mri_nu_correct.mni N 12 87 1 38 talairach --i orig_nu.mgz --xfm transforms/talairach.auto.xfm /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri /usr/local/freesurfer/7.2.0/bin/talairach --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach 7.2.0 Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux Di 19. Apr 14:54:17 CEST 2022 tmpdir is transforms/tmp.talairach.31344 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri mri_convert orig_nu.mgz transforms/tmp.talairach.31344/src.mnc mri_convert orig_nu.mgz transforms/tmp.talairach.31344/src.mnc reading from orig_nu.mgz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.86673e-09, 0) j_ras = (-7.45058e-09, 4.65661e-10, -1) k_ras = (8.58563e-10, 1, 0) writing to transforms/tmp.talairach.31344/src.mnc... -------------------------------------------- mritotal -verbose -debug -clobber -modeldir /usr/local/freesurfer/7.2.0/mni/bin/../share/mni_autoreg -protocol icbm transforms/tmp.talairach.31344/src.mnc transforms/talairach.auto.xfm Transforming slices:................................................................................................................................Done Copying chunks:......................................................................................................................................................Done. Copying chunks:..........................................................................................................Done. Transforming slices:......................................................................................................................................................Done Copying chunks:....................................................................................................................Done. Copying chunks:....................................................................................................................Done. Source volume size: 74 by 106 by 106 Source voxel size = 2.000 2.000 2.000 Source min/max real range = -0.000 137.455 Source min/max voxel= -0.000 146.046 Target volume size: 58 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.970 123.710 Target min/max voxel = -0.000 123.710 AFTER init_params() Transform matrix = 1.0000 0.0000 0.0000 -5.3098 0.0000 1.0000 0.0000 -36.0350 0.0000 0.0000 1.0000 59.9204 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.000 0.000 0.000 Transform trans = -5.310 -36.035 59.920 Transform scale = 1.000 1.000 1.000 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -85.095 -125.510 -47.250 Lattice count = 43 55 29 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = -0.000 190.595 Source min/max voxel= -0.000 190.595 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= -0.000 144.070 Target min/max voxel = -0.000 144.070 AFTER init_params() Transform matrix = 0.8530 -0.0917 -0.0014 -2.6259 0.0658 0.6211 -0.5881 -53.5507 0.0638 0.5846 0.6246 9.7176 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.752 -0.074 0.077 Transform trans = -5.076 -30.489 39.805 Transform scale = 0.858 0.858 0.858 Transform shear = -0.000 0.000 -0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -85.095 -125.510 -57.250 Lattice count = 43 55 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.076 22.528 Source min/max voxel= 0.076 22.934 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.8356 -0.1614 0.1012 5.4211 0.1865 0.6010 -0.5818 -52.1315 0.0386 0.5893 0.6211 3.9391 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.759 -0.045 0.220 Transform trans = -3.590 -29.075 34.148 Transform scale = 0.857 0.857 0.857 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.076 22.528 Source min/max voxel= 0.076 22.934 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.9307 0.0330 0.0947 -0.0160 0.0235 0.7875 -0.5055 -24.0089 -0.0975 0.5049 0.7822 -1.2530 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.573 0.104 0.025 Transform trans = -4.576 -2.287 18.503 Transform scale = 0.936 0.936 0.936 Transform shear = -0.000 -0.000 -0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.076 22.528 Source min/max voxel= 0.076 22.934 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.9349 0.0193 0.0929 0.1393 0.0343 0.7914 -0.5095 -24.4402 -0.0869 0.5003 0.7712 -1.3208 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.575 0.094 0.037 Transform trans = -4.558 -2.380 18.962 Transform scale = 0.940 0.942 0.923 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.076 22.528 Source min/max voxel= 0.076 22.934 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.9375 0.0073 0.0851 -0.2215 0.0400 0.7904 -0.5089 -23.7907 -0.0735 0.4980 0.7677 -0.9220 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.575 0.080 0.043 Transform trans = -4.733 -1.749 19.570 Transform scale = 0.941 0.941 0.918 Transform shear = 0.000 -0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 lta_convert --src orig_nu.mgz --trg /usr/local/freesurfer/7.2.0/mni/bin/../share/mni_autoreg/average_305.mnc --inxfm transforms/talairach.auto.xfm --outlta transforms/talairach.auto.xfm.lta --subject fsaverage Di 19. Apr 14:54:23 CEST 2022 talairach done @#@FSTIME 2022:04:19:14:54:17 talairach N 4 e 6.02 S 0.14 U 5.88 P 100% M 41004 F 0 R 72439 W 0 c 32 w 210 I 0 O 99296 L 87 1 38 @#@FSLOADPOST 2022:04:19:14:54:23 talairach N 4 89 1 39 cp transforms/talairach.auto.xfm transforms/talairach.xfm lta_convert --src orig.mgz --trg /usr/local/freesurfer/7.2.0/average/mni305.cor.mgz --inxfm transforms/talairach.xfm --outlta transforms/talairach.xfm.lta --subject fsaverage --ltavox2vox 7.2.0 --src: orig.mgz src image (geometry). --trg: /usr/local/freesurfer/7.2.0/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.xfm input MNI/XFM transform. --outlta: transforms/talairach.xfm.lta output LTA. --s: fsaverage subject name --ltavox2vox: output LTA as VOX_TO_VOX transform. LTA read, type : 1 0.93859 0.00627 0.08784 0.11445; 0.04300 0.79110 -0.51587 -23.99663; -0.07474 0.50151 0.76285 -0.97142; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.xfm.lta... lta_convert successful. #-------------------------------------------- #@# Talairach Failure Detection Di 19. Apr 14:54:25 CEST 2022 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0321, pval=0.0034 < threshold=0.0050) Command exited with non-zero status 1 @#@FSTIME 2022:04:19:14:54:25 talairach_afd N 4 e 0.00 S 0.00 U 0.00 P 50% M 6324 F 0 R 248 W 0 c 1 w 1 I 0 O 0 L 89 1 39 @#@FSLOADPOST 2022:04:19:14:54:25 talairach_afd N 4 89 1 39 Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string. See: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach ERROR: Talairach failed! Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux recon-all -s indi3K8D6_01_T1w exited with ERRORS at Di 19. Apr 14:54:25 CEST 2022 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Di 19. Apr 16:50:38 CEST 2022 cd /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w setenv SUBJECTS_DIR /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF /usr/local/freesurfer/7.2.0/bin/recon-all -all -subjid indi3K8D6_01_T1w subjid indi3K8D6_01_T1w setenv SUBJECTS_DIR /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF FREESURFER_HOME /usr/local/freesurfer/7.2.0 Actual FREESURFER_HOME /usr/local/freesurfer/7.2.0 build-stamp.txt: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 63001 maxlocks unlimited maxsignal 63001 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 15G 3,5G 4,7G 427M 7,2G 11G Swap: 4,0G 392M 3,6G ######################################## program versions used 7.2.0 (freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/19-14:50:38-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /usr/local/freesurfer/7.2.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/freesurfer/7.2.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# MotionCor Di 19. Apr 16:50:38 CEST 2022 Found 1 runs /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig/001.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/rawavg.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w mri_convert /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/rawavg.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig.mgz --conform mri_convert /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/rawavg.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig.mgz --conform reading from /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/rawavg.mgz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.996734, 0.0435556, -0.068002) j_ras = (0.0436566, 0.999047, -3.1765e-08) k_ras = (-0.0679372, 0.00296877, 0.997685) changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram 0 3059 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig.mgz... @#@FSTIME 2022:04:19:16:50:41 mri_convert N 3 e 2.93 S 0.01 U 2.89 P 99% M 41360 F 0 R 17128 W 0 c 11 w 4 I 0 O 10808 L 01 1 00 @#@FSLOADPOST 2022:04:19:16:50:44 mri_convert N 3 03 1 01 mri_add_xform_to_header -c /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/transforms/talairach.xfm /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2022:04:19:16:50:44 mri_add_xform_to_header N 4 e 1.03 S 0.01 U 1.00 P 98% M 23368 F 0 R 4588 W 0 c 2 w 3 I 0 O 10808 L 03 1 01 @#@FSLOADPOST 2022:04:19:16:50:45 mri_add_xform_to_header N 4 03 1 01 #-------------------------------------------- #@# Talairach Di 19. Apr 16:50:45 CEST 2022 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri /usr/local/freesurfer/7.2.0/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.2.0 Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux Di 19. Apr 16:50:45 CEST 2022 tmpdir is ./tmp.mri_nu_correct.mni.6395 cd /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.6395/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_convert ./tmp.mri_nu_correct.mni.6395/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.6395/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.6395/nu0.mgz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.86673e-09, 0) j_ras = (-7.45058e-09, 4.65661e-10, -1) k_ras = (8.58563e-10, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Di 19. Apr 16:53:20 CEST 2022 mri_nu_correct.mni done @#@FSTIME 2022:04:19:16:50:45 mri_nu_correct.mni N 12 e 154.48 S 0.14 U 154.32 P 99% M 506240 F 0 R 145685 W 0 c 105 w 98 I 0 O 20192 L 03 1 01 @#@FSLOADPOST 2022:04:19:16:53:20 mri_nu_correct.mni N 12 27 1 47 talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... Started at Di 19. Apr 16:53:20 CEST 2022 Ended at Di 19. Apr 16:53:40 CEST 2022 talairach_avi done @#@FSTIME 2022:04:19:16:53:20 talairach_avi N 4 e 20.70 S 0.58 U 14.11 P 70% M 255632 F 0 R 396473 W 0 c 54 w 150 I 0 O 295272 L 27 1 47 @#@FSLOADPOST 2022:04:19:16:53:40 talairach_avi N 4 47 1 55 INFO: transforms/talairach.xfm already exists! The new transforms/talairach.auto.xfm will not be copied to transforms/talairach.xfm This is done to retain any edits made to transforms/talairach.xfm Add the -clean-tal flag to recon-all to overwrite transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Di 19. Apr 16:53:40 CEST 2022 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0321, pval=0.0034 < threshold=0.0050) Command exited with non-zero status 1 @#@FSTIME 2022:04:19:16:53:40 talairach_afd N 4 e 0.00 S 0.00 U 0.00 P 100% M 6456 F 0 R 251 W 0 c 2 w 1 I 0 O 0 L 47 1 55 @#@FSLOADPOST 2022:04:19:16:53:40 talairach_afd N 4 47 1 55 Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string. See: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach INFO: Retrying Talairach align using 3T-based atlas... #-------------------------------------------- #@# Talairach Di 19. Apr 16:53:40 CEST 2022 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri /usr/local/freesurfer/7.2.0/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.2.0 Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux Di 19. Apr 16:53:40 CEST 2022 tmpdir is ./tmp.mri_nu_correct.mni.7736 cd /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.7736/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_convert ./tmp.mri_nu_correct.mni.7736/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.7736/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.7736/nu0.mgz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.86673e-09, 0) j_ras = (-7.45058e-09, 4.65661e-10, -1) k_ras = (8.58563e-10, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Di 19. Apr 16:56:17 CEST 2022 mri_nu_correct.mni done @#@FSTIME 2022:04:19:16:53:40 mri_nu_correct.mni N 12 e 156.54 S 0.13 U 156.37 P 99% M 506436 F 0 R 145803 W 0 c 473 w 95 I 0 O 20192 L 47 1 55 @#@FSLOADPOST 2022:04:19:16:56:17 mri_nu_correct.mni N 12 53 2 10 talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm --atlas 3T18yoSchwartzReactN32_as_orig talairach_avi log file is transforms/talairach_avi.log... Started at Di 19. Apr 16:56:17 CEST 2022 Ended at Di 19. Apr 16:56:44 CEST 2022 talairach_avi done @#@FSTIME 2022:04:19:16:56:17 talairach_avi N 6 e 26.67 S 0.54 U 20.08 P 77% M 255540 F 0 R 396491 W 0 c 241 w 155 I 0 O 295320 L 53 2 10 @#@FSLOADPOST 2022:04:19:16:56:44 talairach_avi N 6 68 2 19 cp transforms/talairach.auto.xfm transforms/talairach.xfm lta_convert --src orig.mgz --trg /usr/local/freesurfer/7.2.0/average/mni305.cor.mgz --inxfm transforms/talairach.xfm --outlta transforms/talairach.xfm.lta --subject fsaverage --ltavox2vox 7.2.0 --src: orig.mgz src image (geometry). --trg: /usr/local/freesurfer/7.2.0/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.xfm input MNI/XFM transform. --outlta: transforms/talairach.xfm.lta output LTA. --s: fsaverage subject name --ltavox2vox: output LTA as VOX_TO_VOX transform. LTA read, type : 1 2.05179 0.05162 -0.55580 -70.37419; 0.39318 1.33912 0.29612 -34.92594; 1.64442 -0.32984 1.32958 -73.88370; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.xfm.lta... lta_convert successful. #-------------------------------------------- #@# Talairach Failure Detection Di 19. Apr 16:56:46 CEST 2022 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Command exited with non-zero status 1 @#@FSTIME 2022:04:19:16:56:46 talairach_afd N 4 e 0.00 S 0.00 U 0.00 P 100% M 5612 F 0 R 203 W 0 c 1 w 1 I 0 O 0 L 69 2 20 @#@FSLOADPOST 2022:04:19:16:56:46 talairach_afd N 4 69 2 20 Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string. See: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach INFO: Trying MINC mritotal to perform Talairach align... #-------------------------------------------- #@# Talairach Di 19. Apr 16:56:46 CEST 2022 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri /usr/local/freesurfer/7.2.0/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.2.0 Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux Di 19. Apr 16:56:46 CEST 2022 tmpdir is ./tmp.mri_nu_correct.mni.8721 cd /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.8721/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_convert ./tmp.mri_nu_correct.mni.8721/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.8721/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.8721/nu0.mgz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.86673e-09, 0) j_ras = (-7.45058e-09, 4.65661e-10, -1) k_ras = (8.58563e-10, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Di 19. Apr 16:59:23 CEST 2022 mri_nu_correct.mni done @#@FSTIME 2022:04:19:16:56:46 mri_nu_correct.mni N 12 e 157.54 S 0.12 U 157.39 P 99% M 506432 F 0 R 145764 W 0 c 285 w 96 I 0 O 20192 L 69 2 20 @#@FSLOADPOST 2022:04:19:16:59:23 mri_nu_correct.mni N 12 24 2 64 talairach --i orig_nu.mgz --xfm transforms/talairach.auto.xfm /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri /usr/local/freesurfer/7.2.0/bin/talairach --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach 7.2.0 Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux Di 19. Apr 16:59:23 CEST 2022 tmpdir is transforms/tmp.talairach.9489 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri mri_convert orig_nu.mgz transforms/tmp.talairach.9489/src.mnc mri_convert orig_nu.mgz transforms/tmp.talairach.9489/src.mnc reading from orig_nu.mgz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.86673e-09, 0) j_ras = (-7.45058e-09, 4.65661e-10, -1) k_ras = (8.58563e-10, 1, 0) writing to transforms/tmp.talairach.9489/src.mnc... -------------------------------------------- mritotal -verbose -debug -clobber -modeldir /usr/local/freesurfer/7.2.0/mni/bin/../share/mni_autoreg -protocol icbm transforms/tmp.talairach.9489/src.mnc transforms/talairach.auto.xfm Transforming slices:................................................................................................................................Done Copying chunks:......................................................................................................................................................Done. Copying chunks:..........................................................................................................Done. Transforming slices:......................................................................................................................................................Done Copying chunks:....................................................................................................................Done. Copying chunks:....................................................................................................................Done. Source volume size: 74 by 106 by 106 Source voxel size = 2.000 2.000 2.000 Source min/max real range = -0.000 137.455 Source min/max voxel= -0.000 146.046 Target volume size: 58 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.970 123.710 Target min/max voxel = -0.000 123.710 AFTER init_params() Transform matrix = 1.0000 0.0000 0.0000 -5.3098 0.0000 1.0000 0.0000 -36.0350 0.0000 0.0000 1.0000 59.9204 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.000 0.000 0.000 Transform trans = -5.310 -36.035 59.920 Transform scale = 1.000 1.000 1.000 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -85.095 -125.510 -47.250 Lattice count = 43 55 29 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = -0.000 190.595 Source min/max voxel= -0.000 190.595 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= -0.000 144.070 Target min/max voxel = -0.000 144.070 AFTER init_params() Transform matrix = 0.8530 -0.0917 -0.0014 -2.6259 0.0658 0.6211 -0.5881 -53.5507 0.0638 0.5846 0.6246 9.7176 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.752 -0.074 0.077 Transform trans = -5.076 -30.489 39.805 Transform scale = 0.858 0.858 0.858 Transform shear = -0.000 0.000 -0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -85.095 -125.510 -57.250 Lattice count = 43 55 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.076 22.528 Source min/max voxel= 0.076 22.934 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.8356 -0.1614 0.1012 5.4211 0.1865 0.6010 -0.5818 -52.1315 0.0386 0.5893 0.6211 3.9391 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.759 -0.045 0.220 Transform trans = -3.590 -29.075 34.148 Transform scale = 0.857 0.857 0.857 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.076 22.528 Source min/max voxel= 0.076 22.934 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.9307 0.0330 0.0947 -0.0160 0.0235 0.7875 -0.5055 -24.0089 -0.0975 0.5049 0.7822 -1.2530 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.573 0.104 0.025 Transform trans = -4.576 -2.287 18.503 Transform scale = 0.936 0.936 0.936 Transform shear = -0.000 -0.000 -0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.076 22.528 Source min/max voxel= 0.076 22.934 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.9349 0.0193 0.0929 0.1393 0.0343 0.7914 -0.5095 -24.4402 -0.0869 0.5003 0.7712 -1.3208 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.575 0.094 0.037 Transform trans = -4.558 -2.380 18.962 Transform scale = 0.940 0.942 0.923 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.076 22.528 Source min/max voxel= 0.076 22.934 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.9375 0.0073 0.0851 -0.2215 0.0400 0.7904 -0.5089 -23.7907 -0.0735 0.4980 0.7677 -0.9220 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.575 0.080 0.043 Transform trans = -4.733 -1.749 19.570 Transform scale = 0.941 0.941 0.918 Transform shear = 0.000 -0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 lta_convert --src orig_nu.mgz --trg /usr/local/freesurfer/7.2.0/mni/bin/../share/mni_autoreg/average_305.mnc --inxfm transforms/talairach.auto.xfm --outlta transforms/talairach.auto.xfm.lta --subject fsaverage Di 19. Apr 16:59:30 CEST 2022 talairach done @#@FSTIME 2022:04:19:16:59:23 talairach N 4 e 6.29 S 0.13 U 6.15 P 99% M 40912 F 0 R 72546 W 0 c 146 w 205 I 0 O 99296 L 24 2 64 @#@FSLOADPOST 2022:04:19:16:59:30 talairach N 4 26 2 66 cp transforms/talairach.auto.xfm transforms/talairach.xfm lta_convert --src orig.mgz --trg /usr/local/freesurfer/7.2.0/average/mni305.cor.mgz --inxfm transforms/talairach.xfm --outlta transforms/talairach.xfm.lta --subject fsaverage --ltavox2vox 7.2.0 --src: orig.mgz src image (geometry). --trg: /usr/local/freesurfer/7.2.0/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.xfm input MNI/XFM transform. --outlta: transforms/talairach.xfm.lta output LTA. --s: fsaverage subject name --ltavox2vox: output LTA as VOX_TO_VOX transform. LTA read, type : 1 0.93859 0.00627 0.08784 0.11445; 0.04300 0.79110 -0.51587 -23.99663; -0.07474 0.50151 0.76285 -0.97142; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.xfm.lta... lta_convert successful. #-------------------------------------------- #@# Talairach Failure Detection Di 19. Apr 16:59:32 CEST 2022 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0321, pval=0.0034 < threshold=0.0050) Command exited with non-zero status 1 @#@FSTIME 2022:04:19:16:59:32 talairach_afd N 4 e 0.00 S 0.00 U 0.00 P 100% M 6432 F 0 R 249 W 0 c 1 w 1 I 0 O 0 L 26 2 66 @#@FSLOADPOST 2022:04:19:16:59:32 talairach_afd N 4 26 2 66 Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string. See: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach ERROR: Talairach failed! Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux recon-all -s indi3K8D6_01_T1w exited with ERRORS at Di 19. Apr 16:59:32 CEST 2022 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Mi 20. Apr 10:47:50 CEST 2022 cd /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w setenv SUBJECTS_DIR /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF /usr/local/freesurfer/7.2.0/bin/recon-all -s indi3K8D6_01_T1w -talairach -use-mritotal -tal-check -clean-tal subjid indi3K8D6_01_T1w setenv SUBJECTS_DIR /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF FREESURFER_HOME /usr/local/freesurfer/7.2.0 Actual FREESURFER_HOME /usr/local/freesurfer/7.2.0 build-stamp.txt: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 63001 maxlocks unlimited maxsignal 63001 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 15G 3,6G 4,2G 582M 7,7G 10G Swap: 4,0G 390M 3,6G ######################################## program versions used 7.2.0 (freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:50-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/20-08:47:51-GMT BuildTime: Jul 21 2021 02:56:14 BuildStamp: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b User: stefan.fritze Machine: 54G7T63 Platform: Linux PlatformVersion: 5.0.0-32-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /usr/local/freesurfer/7.2.0/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/freesurfer/7.2.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### mv -f /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/transforms/talairach.xfm /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/trash mv -f /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri/orig_nu.mgz /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/trash #-------------------------------------------- #@# Talairach Mi 20. Apr 10:47:51 CEST 2022 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri /usr/local/freesurfer/7.2.0/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.2.0 Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux Mi 20. Apr 10:47:51 CEST 2022 tmpdir is ./tmp.mri_nu_correct.mni.8986 cd /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.8986/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_convert ./tmp.mri_nu_correct.mni.8986/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.8986/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.8986/nu0.mgz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.86673e-09, 0) j_ras = (-7.45058e-09, 4.65661e-10, -1) k_ras = (8.58563e-10, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Mi 20. Apr 10:50:19 CEST 2022 mri_nu_correct.mni done @#@FSTIME 2022:04:20:10:47:51 mri_nu_correct.mni N 12 e 148.79 S 0.12 U 148.67 P 99% M 507196 F 0 R 145911 W 0 c 734 w 98 I 0 O 20192 L 23 0 15 @#@FSLOADPOST 2022:04:20:10:50:19 mri_nu_correct.mni N 12 53 0 28 talairach --i orig_nu.mgz --xfm transforms/talairach.auto.xfm /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri /usr/local/freesurfer/7.2.0/bin/talairach --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach 7.2.0 Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux Mi 20. Apr 10:50:19 CEST 2022 tmpdir is transforms/tmp.talairach.9130 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri mri_convert orig_nu.mgz transforms/tmp.talairach.9130/src.mnc mri_convert orig_nu.mgz transforms/tmp.talairach.9130/src.mnc reading from orig_nu.mgz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.86673e-09, 0) j_ras = (-7.45058e-09, 4.65661e-10, -1) k_ras = (8.58563e-10, 1, 0) writing to transforms/tmp.talairach.9130/src.mnc... -------------------------------------------- mritotal -verbose -debug -clobber -modeldir /usr/local/freesurfer/7.2.0/mni/bin/../share/mni_autoreg -protocol icbm transforms/tmp.talairach.9130/src.mnc transforms/talairach.auto.xfm Transforming slices:................................................................................................................................Done Copying chunks:......................................................................................................................................................Done. Copying chunks:..........................................................................................................Done. Transforming slices:......................................................................................................................................................Done Copying chunks:....................................................................................................................Done. Copying chunks:....................................................................................................................Done. Source volume size: 74 by 106 by 106 Source voxel size = 2.000 2.000 2.000 Source min/max real range = -0.000 137.455 Source min/max voxel= -0.000 146.046 Target volume size: 58 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.970 123.710 Target min/max voxel = -0.000 123.710 AFTER init_params() Transform matrix = 1.0000 0.0000 0.0000 -5.3098 0.0000 1.0000 0.0000 -36.0350 0.0000 0.0000 1.0000 59.9204 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.000 0.000 0.000 Transform trans = -5.310 -36.035 59.920 Transform scale = 1.000 1.000 1.000 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -85.095 -125.510 -47.250 Lattice count = 43 55 29 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = -0.000 190.595 Source min/max voxel= -0.000 190.595 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= -0.000 144.070 Target min/max voxel = -0.000 144.070 AFTER init_params() Transform matrix = 0.8530 -0.0917 -0.0014 -2.6259 0.0658 0.6211 -0.5881 -53.5507 0.0638 0.5846 0.6246 9.7176 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.752 -0.074 0.077 Transform trans = -5.076 -30.489 39.805 Transform scale = 0.858 0.858 0.858 Transform shear = -0.000 0.000 -0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -85.095 -125.510 -57.250 Lattice count = 43 55 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.076 22.528 Source min/max voxel= 0.076 22.934 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.8356 -0.1614 0.1012 5.4211 0.1865 0.6010 -0.5818 -52.1315 0.0386 0.5893 0.6211 3.9391 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.759 -0.045 0.220 Transform trans = -3.590 -29.075 34.148 Transform scale = 0.857 0.857 0.857 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.076 22.528 Source min/max voxel= 0.076 22.934 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.9307 0.0330 0.0947 -0.0160 0.0235 0.7875 -0.5055 -24.0089 -0.0975 0.5049 0.7822 -1.2530 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.573 0.104 0.025 Transform trans = -4.576 -2.287 18.503 Transform scale = 0.936 0.936 0.936 Transform shear = -0.000 -0.000 -0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.076 22.528 Source min/max voxel= 0.076 22.934 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.9349 0.0193 0.0929 0.1393 0.0343 0.7914 -0.5095 -24.4402 -0.0869 0.5003 0.7712 -1.3208 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.575 0.094 0.037 Transform trans = -4.558 -2.380 18.962 Transform scale = 0.940 0.942 0.923 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.076 22.528 Source min/max voxel= 0.076 22.934 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.9375 0.0073 0.0851 -0.2215 0.0400 0.7904 -0.5089 -23.7907 -0.0735 0.4980 0.7677 -0.9220 Transform center = 5.638 18.444 -50.466 Transform rotations = 0.575 0.080 0.043 Transform trans = -4.733 -1.749 19.570 Transform scale = 0.941 0.941 0.918 Transform shear = 0.000 -0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 lta_convert --src orig_nu.mgz --trg /usr/local/freesurfer/7.2.0/mni/bin/../share/mni_autoreg/average_305.mnc --inxfm transforms/talairach.auto.xfm --outlta transforms/talairach.auto.xfm.lta --subject fsaverage Mi 20. Apr 10:50:25 CEST 2022 talairach done @#@FSTIME 2022:04:20:10:50:19 talairach N 4 e 5.07 S 0.11 U 4.95 P 100% M 41028 F 0 R 72534 W 0 c 26 w 209 I 0 O 99304 L 53 0 28 @#@FSLOADPOST 2022:04:20:10:50:25 talairach N 4 54 0 28 cp transforms/talairach.auto.xfm transforms/talairach.xfm lta_convert --src orig.mgz --trg /usr/local/freesurfer/7.2.0/average/mni305.cor.mgz --inxfm transforms/talairach.xfm --outlta transforms/talairach.xfm.lta --subject fsaverage --ltavox2vox 7.2.0 --src: orig.mgz src image (geometry). --trg: /usr/local/freesurfer/7.2.0/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.xfm input MNI/XFM transform. --outlta: transforms/talairach.xfm.lta output LTA. --s: fsaverage subject name --ltavox2vox: output LTA as VOX_TO_VOX transform. LTA read, type : 1 0.93859 0.00627 0.08784 0.11445; 0.04300 0.79110 -0.51587 -23.99663; -0.07474 0.50151 0.76285 -0.97142; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.xfm.lta... lta_convert successful. #-------------------------------------------- #@# Talairach Failure Detection Mi 20. Apr 10:50:27 CEST 2022 /home/stefan.fritze/Documents/Freesurfer_Analysen_INDICATE_BMBF/indi3K8D6_01_T1w/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0321, pval=0.0034 < threshold=0.0050) Command exited with non-zero status 1 @#@FSTIME 2022:04:20:10:50:27 talairach_afd N 4 e 0.00 S 0.00 U 0.00 P 50% M 6388 F 0 R 247 W 0 c 1 w 1 I 0 O 0 L 53 0 28 @#@FSLOADPOST 2022:04:20:10:50:27 talairach_afd N 4 53 0 28 Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string. See: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach ERROR: Talairach failed! Linux 54G7T63 5.0.0-32-generic #34~18.04.2-Ubuntu SMP Thu Oct 10 10:36:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux recon-all -s indi3K8D6_01_T1w exited with ERRORS at Mi 20. Apr 10:50:27 CEST 2022 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting