muen223-105-dhcp:subjects rupasabbineni$ mris_anatomical_stats -l new.label -a aparc.a2009s.annot -log outSUB1_lhVOL2 SUB1 lh

limiting computations to label /Volumes/DISK/Software/freesurfer/subjects/qdec/Results/new.label.

computing statistics for each annotation in aparc.a2009s.annot.

outputting results to outSUB1_lhVOL2...

reading volume /Volumes/DISK/Software/freesurfer/subjects/SUB1/mri/wm.mgz...

reading input surface /Volumes/DISK/Software/freesurfer/subjects/SUB1/surf/lh.white...

reading input pial surface /Volumes/DISK/Software/freesurfer/subjects/SUB1/surf/lh.pial...

reading input white surface /Volumes/DISK/Software/freesurfer/subjects/SUB1/surf/lh.white...

reading colortable from annotation file...

colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt)

Segmentation fault: 11

On Mon, Mar 17, 2014 at 11:54 AM, Rupa Sabbineni <asabbineni@mrn.org> wrote:

Good morning!

I was trying to run the mris_anatomical_stats command and for some subjects I keep getting Segmentation fault:11 error.

Some of the posts in the archive suggested that I run the recon-all command since it usually means that subjects surfaces are out of sync SO I RERAN RECON_ALL(which created the stats). Then I reran the mris_anatomical_stats command and got the segmentation fault again.

The command im using is

mris_anatomical_stats -l new.label -a aparc.a2009s.annot -log outSUB1_lhVOL2 SUB1 lh

A little background on the new.label. We got the label by doing a regression in qdec at FDR 0.05 which created cluster and peak cluster label.

Can anyone please provide me some insight on how to trouble shoot this problem?

Thank you!

Rupa

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Rupa