#-------------------------------------------- #@# Segmentation of brainstem substructures Mon Apr 4 23:25:13 CEST 2016 ------------------------------------------ Setting up environment variables --- LD_LIBRARY_PATH is .:/usr/local/freesurfer/MCRv80/runtime/glnxa64:/usr/local/freesurfer/MCRv80/bin/glnxa64:/usr/local/freesurfer/MCRv80/sys/os/glnxa64:/usr/local/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/client:/usr/local/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64: Warning: application is running on a locale different from the original platform locale. Registering imageDump.mgz to BS mask from ASEG fixedImageFileName: imageDump.mgz movingImageFileName: /usr/local/freesurfer/output/28486/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz degreesOfFreedom: 3 numberOfBins: 20 useDefaultSchedule: 1 initialTranslationMode: 2 extraInputImageFileNames: Initializing the parameters as follows: [0, -0, 0, -79.6891, -75.6911, -63.3739, 1, 1, 1, 0, 0, 0] Using fixedShrinkFactors: [1, 1, 1] Shrinking fixed image: 0% 0.999774% 1.99955% 2.99932% 3.9991% 4.99887% 5.99865% 6.99842% 7.9982% 8.99797% 9.99774% 10.9975% 11.9973% 12.9971% 13.9968% 14.9966% 15.9964% 16.9962% 17.9959% 18.9957% 19.9955% 20.9953% 21.995% 22.9948% 23.9946% 24.9944% 25.9941% 26.9939% 27.9937% 28.9935% 29.9932% 30.993% 31.9928% 32.9926% 33.9923% 34.9921% 35.9919% 36.9917% 37.9914% 38.9912% 39.991% 40.9908% 41.9905% 42.9903% 43.9901% 44.9898% 45.9896% 46.9894% 47.9892% 48.9889% 49.9887% 50.9885% 51.9883% 52.988% 53.9878% 54.9876% 55.9874% 56.9871% 57.9869% 58.9867% 59.9865% 60.9862% 61.986% 62.9858% 63.9856% 64.9853% 65.9851% 66.9849% 67.9847% 68.9844% 69.9842% 70.984% 71.9838% 72.9835% 73.9833% 74.9831% 75.9829% 76.9826% 77.9824% 78.9822% 79.982% 80.9817% 81.9815% 82.9813% 83.981% 84.9808% 85.9806% 86.9804% 87.9801% 88.9799% 89.9797% 90.9795% 91.9792% 92.979% 93.9788% 94.9786% 95.9783% 96.9781% 97.9779% 98.9777% 99.9774% 100% 100% Using movingShrinkFactors: [1, 1, 1] Shrinking moving image: 0% 0.999733% 1.99947% 2.9992% 3.99893% 4.99867% 5.9984% 6.99813% 7.99787% 8.9976% 9.99733% 10.9971% 11.9968% 12.9965% 13.9963% 14.996% 15.9957% 16.9955% 17.9952% 18.9949% 19.9947% 20.9944% 21.9941% 22.9939% 23.9936% 24.9933% 25.9931% 26.9928% 27.9925% 28.9923% 29.992% 30.9917% 31.9915% 32.9912% 33.9909% 34.9907% 35.9904% 36.9901% 37.9899% 38.9896% 39.9893% 40.9891% 41.9888% 42.9885% 43.9883% 44.988% 45.9877% 46.9875% 47.9872% 48.9869% 49.9867% 50.9864% 51.9861% 52.9859% 53.9856% 54.9853% 55.9851% 56.9848% 57.9845% 58.9843% 59.984% 60.9837% 61.9835% 62.9832% 63.9829% 64.9827% 65.9824% 66.9821% 67.9819% 68.9816% 69.9813% 70.9811% 71.9808% 72.9805% 73.9803% 74.98% 75.9797% 76.9795% 77.9792% 78.9789% 79.9787% 80.9784% 81.9781% 82.9779% 83.9776% 84.9773% 85.9771% 86.9768% 87.9765% 88.9762% 89.976% 90.9757% 91.9755% 92.9752% 93.9749% 94.9747% 95.9744% 96.9741% 97.9739% 98.9736% 99.9733% 100% 100% Using fixedSchedule: [4, 4, 4] [1, 1, 1] Using movingSchedule: [4, 4, 4] [1, 1, 1] Using scales: [57.1429, 57.1429, 57.1429, 1, 1, 1, 100, 100, 100, 100, 100, 100] Using parameterOrder: [0, 0, 0, 1, 2, 3, 0, 0, 0, 0, 0, 0] Calculating fixed image pyramid: 0% 50% 100% Calculating moving image pyramid: 0% 50% 100% Doing registration at level 0 of 2 Iteration 0: value = -0.519029 Current position: Rotation: 0 -0 0 Translation: -79.3715 -76.1416 -64.5542 Scaling: 1 1 1 Skewing: 0 0 0 Iteration 1: value = -0.520881 Current position: Rotation: 0 -0 0 Translation: -79.215 -75.9972 -64.6615 Scaling: 1 1 1 Skewing: 0 0 0 Iteration 2: value = -0.521563 Current position: Rotation: 0 -0 0 Translation: -79.2179 -75.8176 -64.6615 Scaling: 1 1 1 Skewing: 0 0 0 Iteration 3: value = -0.521773 Current position: Rotation: 0 -0 0 Translation: -79.2904 -75.7735 -64.6615 Scaling: 1 1 1 Skewing: 0 0 0 Iteration 4: value = -0.521773 Current position: Rotation: 0 -0 0 Translation: -79.2904 -75.7748 -64.6615 Scaling: 1 1 1 Skewing: 0 0 0 PowellOptimizer: Cost function values at the current parameter (-0.521773) and at the local extrema (-0.521773) are within Value Tolerance (0) Doing registration at level 1 of 2 Iteration 0: value = -0.32915 Current position: Rotation: 0 -0 0 Translation: -79.3357 -75.7705 -65.7238 Scaling: 1 1 1 Skewing: 0 0 0 Iteration 1: value = -0.329927 Current position: Rotation: 0 -0 0 Translation: -79.3357 -75.7705 -65.758 Scaling: 1 1 1 Skewing: 0 0 0 Iteration 2: value = -0.329986 Current position: Rotation: 0 -0 0 Translation: -79.3357 -75.7573 -65.758 Scaling: 1 1 1 Skewing: 0 0 0 Iteration 3: value = -0.329987 Current position: Rotation: 0 -0 0 Translation: -79.3357 -75.7553 -65.758 Scaling: 1 1 1 Skewing: 0 0 0 PowellOptimizer: Cost function values at the current parameter (-0.329987) and at the local extrema (-0.329987) are within Value Tolerance (0) Wrote out imageDump_coregistered.mgz $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ --mov: Using imageDump.mgz as movable/source volume. --dst: Using /usr/local/freesurfer/output/28486/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz as target volume. --lta: Output transform as trash.lta . --mapmovhdr: Will save header adjusted movable as imageDump_coregistered.mgz ! --sat: Using saturation 50 in M-estimator! reading source 'imageDump.mgz'... reading target '/usr/local/freesurfer/output/28486/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz'... Registration::setSourceAndTarget(MRI s, MRI t, keeptype = TRUE ) Type Source : 4 Type Target : 4 keeping type Reordering axes in mov to better fit dst... ( -1 3 -2 ) MRIreorder() ----------- xdim=-1 ydim=3 zdim=-2 src 65 55 93, 1.000000 1.000000 1.000000 dst 65 93 55, 1.000000 1.000000 1.000000 Determinant after swap : 1 Mov: (1, 1, 1)mm and dim (65, 93, 55) Dst: (1, 1, 1)mm and dim (49, 68, 45) Asserting both images: 1mm isotropic - no Mov reslice necessary - reslicing Dst ... -- Original : (1, 1, 1)mm and (49, 68, 45) voxels. -- Resampled: (1, 1, 1)mm and (65, 93, 55) voxels. -- Reslicing using cubic bspline MRItoBSpline degree 3 Registration::computeMultiresRegistration - computing centroids - computing initial transform -- using translation info - Get Gaussian Pyramid Limits ( min size: 16 max size: -1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - initial transform: Ti = [ ... 1.0000000000000 0 0 -0.1529102159941 0 1.0000000000000 0 1.6068147007402 0 0 1.0000000000000 -0.5038253845202 0 0 0 1.0000000000000 ] - initial iscale: Ii =1 Resolution: 1 S( 32 46 27 ) T( 32 46 27 ) Iteration(f): 1 -- diff. to prev. transform: 12.7542 Iteration(f): 2 -- diff. to prev. transform: 0.636085 Iteration(f): 3 -- diff. to prev. transform: 0.0422408 Iteration(f): 4 -- diff. to prev. transform: 0.0133019 Iteration(f): 5 -- diff. to prev. transform: 0.00389015 <= 0.01 :-) Resolution: 0 S( 65 93 55 ) T( 65 93 55 ) Iteration(f): 1 -- diff. to prev. transform: 0.516309 Iteration(f): 2 -- diff. to prev. transform: 0.203819 Iteration(f): 3 -- diff. to prev. transform: 0.0691015 Iteration(f): 4 -- diff. to prev. transform: 0.0313734 Iteration(f): 5 -- diff. to prev. transform: 0.0098965 <= 0.01 :-) - final transform: Tf = [ ... 0.9986882065155 -0.0267444238452 0.0436646534409 -0.3127538053667 0.0184325703114 0.9833619253238 0.1807195733042 -1.5598554151659 -0.0477713985418 -0.1796776547507 0.9825649260302 8.2766516792123 0 0 0 1.0000000000000 ] - final iscale: If = 1 Final Transform: Adjusting final transform due to initial resampling (voxel or size changes) ... M = [ ... -0.9986882065155 0.0436646534409 0.0267444238452 53.1428044178660 -0.0184325703114 0.1807195733042 -0.9833619253238 77.5891262145505 0.0477713985418 0.9825649260302 0.1796776547507 -16.3110620645292 0 0 0 1.0000000000000 ] Determinant : -1 writing output transformation to trash.lta ... converting VOX to RAS and saving RAS2RAS... mapmovhdr: Changing vox2ras MOV header (to map to DST) ... To check aligned result, run: freeview -v /usr/local/freesurfer/output/28486/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz imageDump_coregistered.mgz Registration took 0 minutes and 1 seconds. Thank you for using RobustRegister! If you find it useful and use it for a publication, please cite: Highly Accurate Inverse Consistent Registration: A Robust Approach M. Reuter, H.D. Rosas, B. Fischl. NeuroImage 53(4):1181-1196, 2010. http://dx.doi.org/10.1016/j.neuroimage.2010.07.020 http://reuter.mit.edu/papers/reuter-robreg10.pdf $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ --mov: Using imageDump.mgz as movable/source volume. --dst: Using /usr/local/freesurfer/output/28486/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz as target volume. --lta: Output transform as trash.lta . --mapmovhdr: Will save header adjusted movable as imageDump_coregistered.mgz ! --affine: Enableing affine transform! --sat: Using saturation 50 in M-estimator! reading source 'imageDump.mgz'... reading target '/usr/local/freesurfer/output/28486/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz'... Registration::setSourceAndTarget(MRI s, MRI t, keeptype = TRUE ) Type Source : 4 Type Target : 4 keeping type Reordering axes in mov to better fit dst... ( -1 3 -2 ) MRIreorder() ----------- xdim=-1 ydim=3 zdim=-2 src 65 55 93, 1.000000 1.000000 1.000000 dst 65 93 55, 1.000000 1.000000 1.000000 Determinant after swap : 1 Mov: (1, 1, 1)mm and dim (65, 93, 55) Dst: (1, 1, 1)mm and dim (49, 68, 45) Asserting both images: 1mm isotropic - no Mov reslice necessary - reslicing Dst ... -- Original : (1, 1, 1)mm and (49, 68, 45) voxels. -- Resampled: (1, 1, 1)mm and (65, 93, 55) voxels. -- Reslicing using cubic bspline MRItoBSpline degree 3 Registration::computeMultiresRegistration - computing centroids - computing initial transform -- using translation info - Get Gaussian Pyramid Limits ( min size: 16 max size: -1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - initial transform: Ti = [ ... 1.0000000000000 0 0 -0.1529102159941 0 1.0000000000000 0 1.6068147007402 0 0 1.0000000000000 -0.5038253845202 0 0 0 1.0000000000000 ] - initial iscale: Ii =1 Resolution: 1 S( 32 46 27 ) T( 32 46 27 ) Iteration(f): 1 -- diff. to prev. transform: 16.9544 Iteration(f): 2 -- diff. to prev. transform: 1.64784 Iteration(f): 3 -- diff. to prev. transform: 0.0733304 Iteration(f): 4 -- diff. to prev. transform: 0.0135107 Iteration(f): 5 -- diff. to prev. transform: 0.00239882 <= 0.01 :-) Resolution: 0 S( 65 93 55 ) T( 65 93 55 ) Iteration(f): 1 -- diff. to prev. transform: 2.08834 Iteration(f): 2 -- diff. to prev. transform: 0.67622 Iteration(f): 3 -- diff. to prev. transform: 0.237706 Iteration(f): 4 -- diff. to prev. transform: 0.0929111 Iteration(f): 5 -- diff. to prev. transform: 0.0342036 max it: 5 reached! - final transform: Tf = [ ... 1.0593359799917 -0.0302743577517 0.0489542166697 -2.1913778013783 0.0268469082154 0.8877857763267 0.2209432363335 0.2359485882735 -0.0483595803676 -0.1756851043654 1.0832609554207 5.6588250350452 0 0 0 1.0000000000000 ] - final iscale: If = 1 ********************************************************** * * WARNING: Registration did not converge in 5 steps! * Problem might be ill posed. * Please inspect output manually! * ********************************************************** Final Transform: Adjusting final transform due to initial resampling (voxel or size changes) ... M = [ ... -1.0593361062624 0.0489542168748 0.0302743620901 54.8208842537267 -0.0268469094535 0.2209432757698 -0.8877858788667 71.1304387405066 0.0483595873185 1.0832610821740 0.1756851414506 -18.5992143847831 0 0 0 1.0000000000000 ] Determinant : -1.06296 Decompose into Rot * Shear * Scale : Rot = [ ... -0.9985476674530 0.0420527317564 0.0336767512689 -0.0247246311949 0.1976797035008 -0.9799548088744 0.0478669869167 0.9793642338659 0.1963528685501 ] Shear = [ ... 1.0000000000000 -0.0022531373645 0.0001427965942 -0.0023505580345 1.0000000000000 -0.0023902503607 0.0001218948472 -0.0019558141413 1.0000000000000 ] Scale = diag([ 1.0607762056255 1.1066418196153 0.9055058648936 ]) writing output transformation to trash.lta ... converting VOX to RAS and saving RAS2RAS... mapmovhdr: Changing vox2ras MOV header (to map to DST) ... To check aligned result, run: freeview -v /usr/local/freesurfer/output/28486/tmp/BS_T1based//BS-DE-binaryMask_autoCropped.mgz imageDump_coregistered.mgz Registration took 0 minutes and 1 seconds. Thank you for using RobustRegister! If you find it useful and use it for a publication, please cite: Highly Accurate Inverse Consistent Registration: A Robust Approach M. Reuter, H.D. Rosas, B. Fischl. NeuroImage 53(4):1181-1196, 2010. http://dx.doi.org/10.1016/j.neuroimage.2010.07.020 http://reuter.mit.edu/papers/reuter-robreg10.pdf Reading contexts of file /usr/local/freesurfer/average/BrainstemSS/atlas/compressionLookupTable.txt Constructing image-to-world transform from header information (cheating.mgz) Returning the following transform: AffineTransform (0x7f30b8e10cd0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 399 Debug: Off Observers: none Matrix: -1 0 0 0 0 1 0 -1 0 Offset: [125.159, -84.183, 150.744] Center: [0, 0, 0] Translation: [125.159, -84.183, 150.744] Inverse: -1 0 0 0 0 -1 0 1 0 Singular: 0 Constructing image-to-world transform from header information (/usr/local/freesurfer/output/28486/tmp/BS_T1based/imageDump.mgz) Returning the following transform: AffineTransform (0x7f30b8e18e80) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 550 Debug: Off Observers: none Matrix: 1.05934 -0.0489542 -0.0302744 0.0483596 1.08326 0.175685 0.0268469 -0.220943 0.887786 Offset: [-31.6619, -25.7822, -53.3867] Center: [0, 0, 0] Translation: [-31.6619, -25.7822, -53.3867] Inverse: 0.941257 0.0471793 0.0227614 -0.0359527 0.885522 -0.176463 -0.0374114 0.218953 1.08179 Singular: 0 Transform before cropping: AffineTransform (0x7f30b8e18e80) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 552 Debug: Off Observers: none Matrix: -1.05934 0.0489542 0.0302744 -0.0268469 0.220943 -0.887786 0.0483596 1.08326 0.175685 Offset: [156.821, 204.13, 58.4008] Center: [0, 0, 0] Translation: [156.821, 204.13, 58.4008] Inverse: -0.941257 -0.0227614 0.0471793 0.0359527 0.176463 0.885522 0.0374114 -1.08179 0.218953 Singular: 0 WorldToImageTransform before cropping: AffineTransform (0x7f30b8393a90) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 554 Debug: Off Observers: none Matrix: -1 0 0 0 0 -1 0 1 0 Offset: [125.159, 150.744, 84.183] Center: [0, 0, 0] Translation: [125.159, 150.744, 84.183] Inverse: -1 0 0 0 0 1 0 -1 0 Singular: 0 m_BoundingBoxSize: [65, 55,93] minimalMappedCoordinate: [89.0234, 120.736,58.4008] maximalMappedCoordinate: [162.25, 216.061,136.155] Cropping with min [82 111 51] and max [170 226 144] m_OriginalImageRegion before checking margins: ImageRegion (0x7f30b8394660) Dimension: 3 Index: [82, 111, 51] Size: [89, 116, 94] m_CroppedImageRegion before checking margins: ImageRegion (0x7f30b8394628) Dimension: 3 Index: [0, 0, 0] Size: [89, 116, 94] m_OriginalImageRegion after checking margins: ImageRegion (0x7f30b8394660) Dimension: 3 Index: [82, 111, 51] Size: [89, 116, 94] m_CroppedImageRegion after checking margins: ImageRegion (0x7f30b8394628) Dimension: 3 Index: [0, 0, 0] Size: [89, 116, 94] Transform after cropping: AffineTransform (0x7f30b8e18e80) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 706 Debug: Off Observers: none Matrix: -1.05934 0.0489542 0.0302744 -0.0268469 0.220943 -0.887786 0.0483596 1.08326 0.175685 Offset: [74.8209, 93.1304, 7.40078] Center: [0, 0, 0] Translation: [74.8209, 93.1304, 7.40078] Inverse: -0.941257 -0.0227614 0.0471793 0.0359527 0.176463 0.885522 0.0374114 -1.08179 0.218953 Singular: 0 WorldToImageTransform after cropping: AffineTransform (0x7f30b8393a90) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 707 Debug: Off Observers: none Matrix: -1 0 0 0 0 -1 0 1 0 Offset: [43.159, 39.7437, 33.183] Center: [0, 0, 0] Translation: [43.159, 39.7437, 33.183] Inverse: -1 0 0 0 0 1 0 -1 0 Singular: 0 Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Warning: This concatenation operation includes an empty array with an incorrect number of rows. Concatenation including empty arrays will require all arrays to have the same number of rows in a future release. [> In segmentSubject at 209] Reading contexts of file /usr/local/freesurfer/average/BrainstemSS/atlas/compressionLookupTable.txt -------------- Making Left-VentralDC map to reduced label 1 Making 4th-Ventricle map to reduced label 1 Making Left-Cerebellum-White-Matter map to reduced label 1 Making Left-Cerebellum-Cortex map to reduced label 1 Making Medulla map to reduced label 1 Making Pons map to reduced label 1 Making SCP map to reduced label 1 Making Midbrain map to reduced label 1 -------------- Making Left-Caudate map to reduced label 2 Making Left-Accumbens-area map to reduced label 2 Making Left-Pallidum map to reduced label 2 Making 3rd-Ventricle map to reduced label 2 Making Left-Putamen map to reduced label 2 Making Left-Thalamus-Proper map to reduced label 2 Making Left-Amygdala map to reduced label 2 Making Left-Lateral-Ventricle map to reduced label 2 Making Left-choroid-plexus map to reduced label 2 Making Left-Hippocampus map to reduced label 2 Making Left-Cerebral-White-Matter map to reduced label 2 Making Left-Cerebral-Cortex map to reduced label 2 Making Background map to reduced label 2 Smoothing mesh with kernel size 3.000000 ...Smoothing class: 0 Smoothing class: 1 done numberOfImages = 1 Image: 4 numberOfClasses = 2 numberOfImages = 1 precisions[0][0][0] = 1.000000 precisions[0][0][1] = 1.000000 means[0][0] = 255.000000 means[0][1] = 1.000000 Iteration 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 0.47538 seconds minLogLikelihoodTimesPrior = 2.4046e+05 Iteration 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.5263 voxels in 0.25687 seconds minLogLikelihoodTimesPrior = 2.3843e+05 Iteration 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 3.4679 voxels in 0.23781 seconds minLogLikelihoodTimesPrior = 2.3643e+05 Iteration 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 2.5887 voxels in 0.24952 seconds minLogLikelihoodTimesPrior = 2.3459e+05 Iteration 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.98589 voxels in 0.41717 seconds minLogLikelihoodTimesPrior = 2.3331e+05 Iteration 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.0887 voxels in 0.30316 seconds minLogLikelihoodTimesPrior = 2.3261e+05 Iteration 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.6371 voxels in 0.24139 seconds minLogLikelihoodTimesPrior = 2.3207e+05 Iteration 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.30202 voxels in 0.67245 seconds minLogLikelihoodTimesPrior = 2.3200e+05 Iteration 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17541 voxels in 0.25778 seconds minLogLikelihoodTimesPrior = 2.3189e+05 Iteration 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11643 voxels in 0.42868 seconds minLogLikelihoodTimesPrior = 2.3180e+05 Iteration 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20275 voxels in 0.25198 seconds minLogLikelihoodTimesPrior = 2.3164e+05 Iteration 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.4272 voxels in 0.255 seconds minLogLikelihoodTimesPrior = 2.3141e+05 Iteration 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.63571 voxels in 0.24556 seconds minLogLikelihoodTimesPrior = 2.3113e+05 Iteration 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.63645 voxels in 0.29569 seconds minLogLikelihoodTimesPrior = 2.3080e+05 Iteration 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.63297 voxels in 0.2586 seconds minLogLikelihoodTimesPrior = 2.3040e+05 Iteration 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.70277 voxels in 0.27424 seconds minLogLikelihoodTimesPrior = 2.2994e+05 Iteration 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.45102 voxels in 0.39899 seconds minLogLikelihoodTimesPrior = 2.2963e+05 Iteration 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.48857 voxels in 0.31446 seconds minLogLikelihoodTimesPrior = 2.2950e+05 Iteration 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.1827 voxels in 0.52852 seconds minLogLikelihoodTimesPrior = 2.2943e+05 Iteration 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.28322 voxels in 0.26225 seconds minLogLikelihoodTimesPrior = 2.2934e+05 Iteration 21 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.36655 voxels in 0.3317 seconds minLogLikelihoodTimesPrior = 2.2933e+05 Iteration 22 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.12431 voxels in 0.23376 seconds minLogLikelihoodTimesPrior = 2.2931e+05 Iteration 23 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.050281 voxels in 0.24933 seconds minLogLikelihoodTimesPrior = 2.2930e+05 Iteration 24 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.045781 voxels in 0.75972 seconds minLogLikelihoodTimesPrior = 2.2930e+05 Iteration 25 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0099289 voxels in 0.23122 seconds minLogLikelihoodTimesPrior = 2.2929e+05 Iteration 26 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.028018 voxels in 0.48886 seconds minLogLikelihoodTimesPrior = 2.2929e+05 Iteration 27 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0033575 voxels in 0.23874 seconds minLogLikelihoodTimesPrior = 2.2929e+05 Iteration 28 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0088348 voxels in 0.24198 seconds minLogLikelihoodTimesPrior = 2.2929e+05 Iteration 29 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.029258 voxels in 0.24584 seconds minLogLikelihoodTimesPrior = 2.2928e+05 Iteration 30 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.031398 voxels in 0.26267 seconds minLogLikelihoodTimesPrior = 2.2927e+05 Iteration 31 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.01675 voxels in 1.197 seconds minLogLikelihoodTimesPrior = 2.2927e+05 Iteration 32 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00078006 voxels in 0.29116 seconds minLogLikelihoodTimesPrior = 2.2927e+05 Iteration 33 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.014638 voxels in 0.47186 seconds minLogLikelihoodTimesPrior = 2.2927e+05 Iteration 34 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00027241 voxels in 0.25249 seconds minLogLikelihoodTimesPrior = 2.2927e+05 Iteration 35 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00023914 voxels in 0.23265 seconds minLogLikelihoodTimesPrior = 2.2927e+05 Iteration 36 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0011043 voxels in 0.24491 seconds minLogLikelihoodTimesPrior = 2.2927e+05 Iteration 37 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00096294 voxels in 0.25986 seconds minLogLikelihoodTimesPrior = 2.2927e+05 Iteration 38 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0044541 voxels in 0.247 seconds minLogLikelihoodTimesPrior = 2.2927e+05 Iteration 39 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0038257 voxels in 0.24405 seconds minLogLikelihoodTimesPrior = 2.2927e+05 Iteration 40 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.02 voxels in 0.24858 seconds minLogLikelihoodTimesPrior = 2.2927e+05 Iteration 41 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.013077 voxels in 0.26112 seconds minLogLikelihoodTimesPrior = 2.2926e+05 Iteration 42 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.07992 voxels in 0.24339 seconds minLogLikelihoodTimesPrior = 2.2925e+05 Iteration 43 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.028261 voxels in 0.23678 seconds minLogLikelihoodTimesPrior = 2.2924e+05 Iteration 44 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.036434 voxels in 0.26872 seconds minLogLikelihoodTimesPrior = 2.2921e+05 Iteration 45 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.085568 voxels in 0.2463 seconds minLogLikelihoodTimesPrior = 2.2916e+05 Iteration 46 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13069 voxels in 0.24768 seconds minLogLikelihoodTimesPrior = 2.2907e+05 Iteration 47 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.28681 voxels in 0.23374 seconds minLogLikelihoodTimesPrior = 2.2894e+05 Iteration 48 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.084862 voxels in 0.55475 seconds minLogLikelihoodTimesPrior = 2.2890e+05 Iteration 49 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.064977 voxels in 0.25923 seconds minLogLikelihoodTimesPrior = 2.2883e+05 Iteration 50 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.33353 voxels in 0.26626 seconds minLogLikelihoodTimesPrior = 2.2881e+05 Iteration 51 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.1564 voxels in 0.26466 seconds minLogLikelihoodTimesPrior = 2.2879e+05 Iteration 52 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.14633 voxels in 0.24778 seconds minLogLikelihoodTimesPrior = 2.2875e+05 Iteration 53 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21471 voxels in 0.23906 seconds minLogLikelihoodTimesPrior = 2.2868e+05 Iteration 54 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.22579 voxels in 0.28656 seconds minLogLikelihoodTimesPrior = 2.2859e+05 Iteration 55 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.25501 voxels in 0.26239 seconds minLogLikelihoodTimesPrior = 2.2846e+05 Iteration 56 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.34555 voxels in 0.2378 seconds minLogLikelihoodTimesPrior = 2.2829e+05 Iteration 57 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.49972 voxels in 0.50098 seconds minLogLikelihoodTimesPrior = 2.2826e+05 Iteration 58 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.25168 voxels in 0.24427 seconds minLogLikelihoodTimesPrior = 2.2823e+05 Iteration 59 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.34714 voxels in 0.23304 seconds minLogLikelihoodTimesPrior = 2.2819e+05 Iteration 60 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.29331 voxels in 0.24554 seconds minLogLikelihoodTimesPrior = 2.2817e+05 Iteration 61 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.27814 voxels in 0.25361 seconds minLogLikelihoodTimesPrior = 2.2816e+05 Iteration 62 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.044378 voxels in 0.25185 seconds minLogLikelihoodTimesPrior = 2.2814e+05 Iteration 63 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11162 voxels in 0.7313 seconds minLogLikelihoodTimesPrior = 2.2813e+05 Iteration 64 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.026542 voxels in 0.22604 seconds minLogLikelihoodTimesPrior = 2.2813e+05 Iteration 65 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.057845 voxels in 0.92244 seconds minLogLikelihoodTimesPrior = 2.2813e+05 Iteration 66 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0067385 voxels in 0.24542 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 67 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.050888 voxels in 0.73226 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 68 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.1124e-05 voxels in 0.25173 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 69 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.8094e-05 voxels in 0.27524 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 70 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 4.1558e-05 voxels in 0.26781 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 71 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 8.5809e-05 voxels in 0.25626 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 72 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00016932 voxels in 0.26323 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 73 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00034284 voxels in 0.29961 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 74 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00066968 voxels in 0.25721 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 75 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.001232 voxels in 0.251 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 76 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0025724 voxels in 0.26664 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 77 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0053716 voxels in 0.24366 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 78 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.011106 voxels in 0.24493 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 79 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.021435 voxels in 0.23902 seconds minLogLikelihoodTimesPrior = 2.2812e+05 Iteration 80 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.035488 voxels in 0.24968 seconds minLogLikelihoodTimesPrior = 2.2811e+05 Iteration 81 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.057524 voxels in 0.27177 seconds minLogLikelihoodTimesPrior = 2.2810e+05 Iteration 82 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.08708 voxels in 0.24251 seconds minLogLikelihoodTimesPrior = 2.2808e+05 Iteration 83 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.095352 voxels in 0.24924 seconds minLogLikelihoodTimesPrior = 2.2805e+05 Iteration 84 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11519 voxels in 0.25905 seconds minLogLikelihoodTimesPrior = 2.2799e+05 Iteration 85 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.30091 voxels in 0.24092 seconds minLogLikelihoodTimesPrior = 2.2790e+05 Iteration 86 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.42864 voxels in 0.23263 seconds minLogLikelihoodTimesPrior = 2.2777e+05 Iteration 87 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.38531 voxels in 0.2492 seconds minLogLikelihoodTimesPrior = 2.2771e+05 Iteration 88 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.19392 voxels in 0.25334 seconds minLogLikelihoodTimesPrior = 2.2766e+05 Iteration 89 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.15135 voxels in 0.24464 seconds minLogLikelihoodTimesPrior = 2.2762e+05 Iteration 90 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.2489 voxels in 0.24076 seconds minLogLikelihoodTimesPrior = 2.2758e+05 Iteration 91 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.14706 voxels in 0.23571 seconds minLogLikelihoodTimesPrior = 2.2753e+05 Iteration 92 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.34343 voxels in 0.25927 seconds minLogLikelihoodTimesPrior = 2.2748e+05 Iteration 93 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.26418 voxels in 0.47652 seconds minLogLikelihoodTimesPrior = 2.2748e+05 Iteration 94 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.016262 voxels in 0.23559 seconds minLogLikelihoodTimesPrior = 2.2748e+05 Iteration 95 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.028706 voxels in 0.24835 seconds minLogLikelihoodTimesPrior = 2.2748e+05 Iteration 96 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.049015 voxels in 0.2619 seconds minLogLikelihoodTimesPrior = 2.2747e+05 Iteration 97 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.089299 voxels in 0.26225 seconds minLogLikelihoodTimesPrior = 2.2746e+05 Iteration 98 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.096454 voxels in 0.23727 seconds minLogLikelihoodTimesPrior = 2.2745e+05 Iteration 99 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.1153 voxels in 0.23871 seconds minLogLikelihoodTimesPrior = 2.2744e+05 Iteration 100 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.18434 voxels in 0.23699 seconds minLogLikelihoodTimesPrior = 2.2742e+05 Iteration 101 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17634 voxels in 0.22763 seconds minLogLikelihoodTimesPrior = 2.2740e+05 Iteration 102 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20906 voxels in 0.25039 seconds minLogLikelihoodTimesPrior = 2.2737e+05 Iteration 103 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20224 voxels in 0.25085 seconds minLogLikelihoodTimesPrior = 2.2734e+05 Iteration 104 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.15743 voxels in 0.23911 seconds minLogLikelihoodTimesPrior = 2.2731e+05 Iteration 105 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.15443 voxels in 0.22292 seconds minLogLikelihoodTimesPrior = 2.2728e+05 Iteration 106 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21988 voxels in 0.23311 seconds minLogLikelihoodTimesPrior = 2.2724e+05 Iteration 107 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.24201 voxels in 0.23037 seconds minLogLikelihoodTimesPrior = 2.2719e+05 Iteration 108 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.30417 voxels in 0.22855 seconds minLogLikelihoodTimesPrior = 2.2714e+05 Iteration 109 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.23255 voxels in 0.39712 seconds minLogLikelihoodTimesPrior = 2.2710e+05 Iteration 110 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21865 voxels in 0.22889 seconds minLogLikelihoodTimesPrior = 2.2708e+05 Iteration 111 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17541 voxels in 0.25147 seconds minLogLikelihoodTimesPrior = 2.2703e+05 Iteration 112 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.16693 voxels in 0.63643 seconds minLogLikelihoodTimesPrior = 2.2702e+05 Iteration 113 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.15279 voxels in 0.25367 seconds minLogLikelihoodTimesPrior = 2.2702e+05 Iteration 114 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.049358 voxels in 0.25044 seconds minLogLikelihoodTimesPrior = 2.2701e+05 Iteration 115 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.078886 voxels in 0.24295 seconds minLogLikelihoodTimesPrior = 2.2701e+05 Iteration 116 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13322 voxels in 0.23367 seconds minLogLikelihoodTimesPrior = 2.2700e+05 Iteration 117 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.060845 voxels in 0.23723 seconds minLogLikelihoodTimesPrior = 2.2700e+05 Iteration 118 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13786 voxels in 0.23821 seconds minLogLikelihoodTimesPrior = 2.2699e+05 Iteration 119 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.10171 voxels in 0.23678 seconds minLogLikelihoodTimesPrior = 2.2699e+05 Iteration 120 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.042371 voxels in 0.2353 seconds minLogLikelihoodTimesPrior = 2.2698e+05 Iteration 121 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13004 voxels in 0.22601 seconds minLogLikelihoodTimesPrior = 2.2698e+05 Iteration 122 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.060644 voxels in 0.24127 seconds minLogLikelihoodTimesPrior = 2.2698e+05 Iteration 123 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.044818 voxels in 0.24417 seconds minLogLikelihoodTimesPrior = 2.2698e+05 Iteration 124 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.077731 voxels in 0.24538 seconds minLogLikelihoodTimesPrior = 2.2697e+05 Iteration 125 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.064522 voxels in 0.24664 seconds minLogLikelihoodTimesPrior = 2.2697e+05 Iteration 126 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.040511 voxels in 0.25811 seconds minLogLikelihoodTimesPrior = 2.2696e+05 Iteration 127 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11473 voxels in 0.26054 seconds minLogLikelihoodTimesPrior = 2.2696e+05 Iteration 128 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.059174 voxels in 0.26183 seconds minLogLikelihoodTimesPrior = 2.2695e+05 Iteration 129 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.078521 voxels in 0.24642 seconds minLogLikelihoodTimesPrior = 2.2695e+05 Iteration 130 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11419 voxels in 0.25678 seconds minLogLikelihoodTimesPrior = 2.2695e+05 Iteration 131 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0093947 voxels in 0.25764 seconds minLogLikelihoodTimesPrior = 2.2695e+05 Iteration 132 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.01887 voxels in 0.22958 seconds minLogLikelihoodTimesPrior = 2.2695e+05 Iteration 133 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.028236 voxels in 0.23272 seconds minLogLikelihoodTimesPrior = 2.2695e+05 Iteration 134 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.031034 voxels in 0.27243 seconds minLogLikelihoodTimesPrior = 2.2694e+05 Iteration 135 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.093619 voxels in 0.25256 seconds minLogLikelihoodTimesPrior = 2.2694e+05 Iteration 136 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.018206 voxels in 0.23176 seconds minLogLikelihoodTimesPrior = 2.2694e+05 Iteration 137 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.044597 voxels in 0.22881 seconds minLogLikelihoodTimesPrior = 2.2694e+05 Iteration 138 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.033059 voxels in 0.28006 seconds minLogLikelihoodTimesPrior = 2.2694e+05 Iteration 139 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.024011 voxels in 0.236 seconds minLogLikelihoodTimesPrior = 2.2694e+05 Iteration 140 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.02413 voxels in 0.22985 seconds minLogLikelihoodTimesPrior = 2.2693e+05 Iteration 141 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.034895 voxels in 0.23033 seconds minLogLikelihoodTimesPrior = 2.2692e+05 Iteration 142 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.064861 voxels in 0.24347 seconds minLogLikelihoodTimesPrior = 2.2691e+05 Iteration 143 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.12073 voxels in 0.27049 seconds minLogLikelihoodTimesPrior = 2.2688e+05 Iteration 144 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.22309 voxels in 0.22828 seconds minLogLikelihoodTimesPrior = 2.2684e+05 Iteration 145 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.38776 voxels in 0.23055 seconds minLogLikelihoodTimesPrior = 2.2679e+05 Iteration 146 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.58178 voxels in 0.23409 seconds minLogLikelihoodTimesPrior = 2.2674e+05 Iteration 147 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.60004 voxels in 0.24222 seconds minLogLikelihoodTimesPrior = 2.2673e+05 Iteration 148 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.2925 voxels in 0.25277 seconds minLogLikelihoodTimesPrior = 2.2673e+05 Iteration 149 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.02163 voxels in 0.23604 seconds minLogLikelihoodTimesPrior = 2.2672e+05 Iteration 150 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.045912 voxels in 0.24701 seconds minLogLikelihoodTimesPrior = 2.2672e+05 Iteration 151 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.075042 voxels in 0.2551 seconds minLogLikelihoodTimesPrior = 2.2671e+05 Iteration 152 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.081736 voxels in 0.25999 seconds minLogLikelihoodTimesPrior = 2.2670e+05 Iteration 153 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.11268 voxels in 0.23826 seconds minLogLikelihoodTimesPrior = 2.2669e+05 Iteration 154 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.095426 voxels in 0.23346 seconds minLogLikelihoodTimesPrior = 2.2667e+05 Iteration 155 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13354 voxels in 0.51081 seconds minLogLikelihoodTimesPrior = 2.2667e+05 Iteration 156 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.023135 voxels in 0.24255 seconds minLogLikelihoodTimesPrior = 2.2667e+05 Iteration 157 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.041015 voxels in 0.262 seconds minLogLikelihoodTimesPrior = 2.2667e+05 Iteration 158 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.060223 voxels in 0.28929 seconds minLogLikelihoodTimesPrior = 2.2666e+05 Iteration 159 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.045758 voxels in 0.26268 seconds minLogLikelihoodTimesPrior = 2.2666e+05 Iteration 160 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.096286 voxels in 0.23271 seconds minLogLikelihoodTimesPrior = 2.2666e+05 Iteration 161 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.052745 voxels in 0.24655 seconds minLogLikelihoodTimesPrior = 2.2665e+05 Iteration 162 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.071678 voxels in 0.26587 seconds minLogLikelihoodTimesPrior = 2.2665e+05 Iteration 163 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.1018 voxels in 0.25139 seconds minLogLikelihoodTimesPrior = 2.2665e+05 Iteration 164 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.011057 voxels in 0.24654 seconds minLogLikelihoodTimesPrior = 2.2665e+05 Iteration 165 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.017331 voxels in 0.23893 seconds minLogLikelihoodTimesPrior = 2.2665e+05 Iteration 166 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.037225 voxels in 0.26215 seconds minLogLikelihoodTimesPrior = 2.2664e+05 Iteration 167 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.036077 voxels in 0.25468 seconds minLogLikelihoodTimesPrior = 2.2664e+05 Iteration 168 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.072176 voxels in 0.24033 seconds minLogLikelihoodTimesPrior = 2.2664e+05 Iteration 169 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.01691 voxels in 0.24174 seconds minLogLikelihoodTimesPrior = 2.2664e+05 Iteration 170 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.037439 voxels in 0.25111 seconds minLogLikelihoodTimesPrior = 2.2664e+05 Iteration 171 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.031379 voxels in 0.23181 seconds minLogLikelihoodTimesPrior = 2.2664e+05 Iteration 172 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.027627 voxels in 0.23858 seconds minLogLikelihoodTimesPrior = 2.2664e+05 Iteration 173 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.075644 voxels in 0.26163 seconds minLogLikelihoodTimesPrior = 2.2664e+05 Iteration 174 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0077174 voxels in 0.25346 seconds minLogLikelihoodTimesPrior = 2.2664e+05 Iteration 175 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.019859 voxels in 0.24164 seconds minLogLikelihoodTimesPrior = 2.2664e+05 Iteration 176 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.020085 voxels in 0.24899 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 177 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.033631 voxels in 0.25162 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 178 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.06314 voxels in 0.23019 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 179 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.019355 voxels in 0.22922 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 180 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.06394 voxels in 0.2398 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 181 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.044183 voxels in 0.23335 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 182 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00070704 voxels in 0.23844 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 183 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0033086 voxels in 0.24657 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 184 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0027654 voxels in 0.23457 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 185 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.012461 voxels in 0.23744 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 186 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.019837 voxels in 0.23914 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 187 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.027485 voxels in 0.24277 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 188 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.019424 voxels in 0.22518 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 189 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.027936 voxels in 0.23638 seconds minLogLikelihoodTimesPrior = 2.2663e+05 Iteration 190 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.058468 voxels in 0.23737 seconds minLogLikelihoodTimesPrior = 2.2662e+05 Iteration 191 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.085182 voxels in 0.24804 seconds minLogLikelihoodTimesPrior = 2.2662e+05 Iteration 192 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.07048 voxels in 0.23862 seconds minLogLikelihoodTimesPrior = 2.2662e+05 Iteration 193 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.033816 voxels in 0.23153 seconds minLogLikelihoodTimesPrior = 2.2662e+05 Iteration 194 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.044973 voxels in 0.24139 seconds minLogLikelihoodTimesPrior = 2.2662e+05 Iteration 195 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.040131 voxels in 0.47991 seconds minLogLikelihoodTimesPrior = 2.2662e+05 Iteration 196 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.01999 voxels in 0.2232 seconds minLogLikelihoodTimesPrior = 2.2662e+05 Iteration 197 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.018436 voxels in 0.2324 seconds minLogLikelihoodTimesPrior = 2.2662e+05 Iteration 198 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.02977 voxels in 0.22018 seconds minLogLikelihoodTimesPrior = 2.2662e+05 Iteration 199 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.013081 voxels in 0.23244 seconds minLogLikelihoodTimesPrior = 2.2662e+05 Iteration 200 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.017027 voxels in 0.22354 seconds minLogLikelihoodTimesPrior = 2.2662e+05 Fitting mesh to synthetic image from ASEG took 56.583 seconds Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Constructing image-to-world transform from header information (T1resampled.mgz) Returning the following transform: AffineTransform (0x7f30200136e0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 28162484 Debug: Off Observers: none Matrix: -0.5 0 0 0 0 0.5 0 -0.5 0 Offset: [41.159, -16.183, 30.7437] Center: [0, 0, 0] Translation: [41.159, -16.183, 30.7437] Inverse: -2 0 0 0 0 -2 0 2 0 Singular: 0 Constructing image-to-world transform from header information (/usr/local/freesurfer/output/28486/tmp/BS_T1based/imageDump.mgz) Returning the following transform: AffineTransform (0x7f30200136e0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 28165088 Debug: Off Observers: none Matrix: 1.05934 -0.0489542 -0.0302744 0.0483596 1.08326 0.175685 0.0268469 -0.220943 0.887786 Offset: [-31.6619, -25.7822, -53.3867] Center: [0, 0, 0] Translation: [-31.6619, -25.7822, -53.3867] Inverse: 0.941257 0.0471793 0.0227614 -0.0359527 0.885522 -0.176463 -0.0374114 0.218953 1.08179 Singular: 0 Transform before cropping: AffineTransform (0x7f30200136e0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 28165090 Debug: Off Observers: none Matrix: -2.11867 0.0979084 0.0605487 -0.0536938 0.441887 -1.77557 0.0967192 2.16652 0.35137 Offset: [145.642, 168.261, -19.1984] Center: [0, 0, 0] Translation: [145.642, 168.261, -19.1984] Inverse: -0.470628 -0.0113807 0.0235896 0.0179764 0.0882316 0.442761 0.0187057 -0.540897 0.109477 Singular: 0 WorldToImageTransform before cropping: AffineTransform (0x7f3020c4ec50) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 28165092 Debug: Off Observers: none Matrix: -2 0 0 0 0 -2 0 2 0 Offset: [82.318, 61.4874, 32.366] Center: [0, 0, 0] Translation: [82.318, 61.4874, 32.366] Inverse: -0.5 0 0 0 0 0.5 0 -0.5 0 Singular: 0 m_BoundingBoxSize: [65, 55,93] minimalMappedCoordinate: [10.0468, 1.4719,-19.1984] maximalMappedCoordinate: [156.499, 192.123,136.31] Cropping with min [-4 -18 -34] and max [171 212 152] m_OriginalImageRegion before checking margins: ImageRegion (0x7f30bbfe2530) Dimension: 3 Index: [-4, -18, -34] Size: [176, 231, 187] m_CroppedImageRegion before checking margins: ImageRegion (0x7f30bbfe24f8) Dimension: 3 Index: [0, 0, 0] Size: [176, 231, 187] m_OriginalImageRegion after checking margins: ImageRegion (0x7f30bbfe2530) Dimension: 3 Index: [0, 0, 0] Size: [172, 180, 142] m_CroppedImageRegion after checking margins: ImageRegion (0x7f30bbfe24f8) Dimension: 3 Index: [4, 18, 34] Size: [172, 180, 142] Transform after cropping: AffineTransform (0x7f30200136e0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 28167697 Debug: Off Observers: none Matrix: -2.11867 0.0979084 0.0605487 -0.0536938 0.441887 -1.77557 0.0967192 2.16652 0.35137 Offset: [149.642, 186.261, 14.8016] Center: [0, 0, 0] Translation: [149.642, 186.261, 14.8016] Inverse: -0.470628 -0.0113807 0.0235896 0.0179764 0.0882316 0.442761 0.0187057 -0.540897 0.109477 Singular: 0 WorldToImageTransform after cropping: AffineTransform (0x7f3020c4ec50) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 28167698 Debug: Off Observers: none Matrix: -2 0 0 0 0 -2 0 2 0 Offset: [86.318, 79.4874, 66.366] Center: [0, 0, 0] Translation: [86.318, 79.4874, 66.366] Inverse: -0.5 0 0 0 0 0.5 0 -0.5 0 Singular: 0 Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Warning: This concatenation operation includes an empty array with an incorrect number of rows. Concatenation including empty arrays will require all arrays to have the same number of rows in a future release. [> In segmentSubject at 527] Reading contexts of file /usr/local/freesurfer/average/BrainstemSS/atlas/compressionLookupTable.txt -------------- Making Left-VentralDC map to reduced label 1 Making Medulla map to reduced label 1 Making Pons map to reduced label 1 Making SCP map to reduced label 1 Making Midbrain map to reduced label 1 -------------- Making 3rd-Ventricle map to reduced label 2 Making Left-Lateral-Ventricle map to reduced label 2 Making 4th-Ventricle map to reduced label 2 -------------- Making Left-Amygdala map to reduced label 3 Making Left-Cerebral-Cortex map to reduced label 3 Making Left-Hippocampus map to reduced label 3 -------------- Making Left-Caudate map to reduced label 4 -------------- Making Left-Accumbens-area map to reduced label 5 -------------- Making Left-Pallidum map to reduced label 6 -------------- Making Left-Putamen map to reduced label 7 -------------- Making Left-Thalamus-Proper map to reduced label 8 -------------- Making Left-choroid-plexus map to reduced label 9 -------------- Making Left-Cerebral-White-Matter map to reduced label 10 -------------- Making Background map to reduced label 11 -------------- Making Left-Cerebellum-White-Matter map to reduced label 12 -------------- Making Left-Cerebellum-Cortex map to reduced label 13 Computing hyperparameters for estimation of Gaussian parameters Smoothing mesh collection with kernel size 2.000000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 done numberOfImages = 1 Image: 0 Iteration 1 of 7 minLogLikelihood = 8.2308e+06 minLogLikelihood = 8.0044e+06 minLogLikelihood = 7.9328e+06 minLogLikelihood = 7.9014e+06 minLogLikelihood = 7.8850e+06 minLogLikelihood = 7.8758e+06 minLogLikelihood = 7.8706e+06 minLogLikelihood = 7.8680e+06 minLogLikelihood = 7.8668e+06 minLogLikelihood = 7.8662e+06 minLogLikelihood = 7.8659e+06 minLogLikelihood = 7.8657e+06 minLogLikelihood = 7.8657e+06 EM converged! ans = 78.9079 12.2844 58.2439 65.4365 44.3017 82.4221 70.2103 77.0298 50.7665 90.9354 21.7190 80.5713 57.0323 ans = 1.0e+05 * 0.0913 0.0419 0.1678 0.0319 3.3529 0.1256 0.2551 0.1255 0.5151 0.2074 0.4856 0.0161 0.0813 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.010465 precisions[0][0][1] = 0.015457 precisions[0][0][2] = 0.007720 precisions[0][0][3] = 0.017713 precisions[0][0][4] = 0.001727 precisions[0][0][5] = 0.008923 precisions[0][0][6] = 0.006261 precisions[0][0][7] = 0.008925 precisions[0][0][8] = 0.004406 precisions[0][0][9] = 0.006943 precisions[0][0][10] = 0.004538 precisions[0][0][11] = 0.024954 precisions[0][0][12] = 0.011091 means[0][0] = 78.907906 means[0][1] = 12.284354 means[0][2] = 58.243923 means[0][3] = 65.436485 means[0][4] = 44.301704 means[0][5] = 82.422089 means[0][6] = 70.210327 means[0][7] = 77.029793 means[0][8] = 50.766479 means[0][9] = 90.935417 means[0][10] = 21.719046 means[0][11] = 80.571342 means[0][12] = 57.032261 Resolution level 1 iteration 1 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 3.655 seconds minLogLikelihoodTimesPrior = 7.8638e+06 Resolution level 1 iteration 1 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.3015 voxels in 2.3301 seconds minLogLikelihoodTimesPrior = 7.8497e+06 Resolution level 1 iteration 1 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.0766 voxels in 3.0716 seconds minLogLikelihoodTimesPrior = 7.8370e+06 Resolution level 1 iteration 1 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.8278 voxels in 1.8285 seconds minLogLikelihoodTimesPrior = 7.8344e+06 Resolution level 1 iteration 1 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.36053 voxels in 1.9487 seconds minLogLikelihoodTimesPrior = 7.8294e+06 Resolution level 1 iteration 1 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.0165 voxels in 1.704 seconds minLogLikelihoodTimesPrior = 7.8203e+06 Resolution level 1 iteration 1 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.76293 voxels in 2.121 seconds minLogLikelihoodTimesPrior = 7.8123e+06 Resolution level 1 iteration 1 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 2.5862 voxels in 1.7361 seconds minLogLikelihoodTimesPrior = 7.8025e+06 Resolution level 1 iteration 1 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.6735 voxels in 1.6606 seconds minLogLikelihoodTimesPrior = 7.7891e+06 Resolution level 1 iteration 1 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.2123 voxels in 2.7716 seconds minLogLikelihoodTimesPrior = 7.7779e+06 Resolution level 1 iteration 1 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.5266 voxels in 2.7183 seconds minLogLikelihoodTimesPrior = 7.7683e+06 Resolution level 1 iteration 1 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.707 voxels in 2.7621 seconds minLogLikelihoodTimesPrior = 7.7594e+06 Resolution level 1 iteration 1 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.73244 voxels in 3.1186 seconds minLogLikelihoodTimesPrior = 7.7512e+06 Resolution level 1 iteration 1 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.6753 voxels in 1.7283 seconds minLogLikelihoodTimesPrior = 7.7367e+06 Resolution level 1 iteration 1 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.1366 voxels in 2.0464 seconds minLogLikelihoodTimesPrior = 7.7248e+06 Resolution level 1 iteration 1 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.24802 voxels in 5.0763 seconds minLogLikelihoodTimesPrior = 7.7222e+06 Resolution level 1 iteration 1 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.84053 voxels in 1.648 seconds minLogLikelihoodTimesPrior = 7.7189e+06 Resolution level 1 iteration 1 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.7435 voxels in 1.6797 seconds minLogLikelihoodTimesPrior = 7.7135e+06 Resolution level 1 iteration 1 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.65732 voxels in 1.7132 seconds minLogLikelihoodTimesPrior = 7.7085e+06 Resolution level 1 iteration 1 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.6331 voxels in 1.6633 seconds minLogLikelihoodTimesPrior = 7.7013e+06 Iteration 2 of 7 minLogLikelihood = 7.6458e+06 minLogLikelihood = 7.6381e+06 minLogLikelihood = 7.6364e+06 minLogLikelihood = 7.6360e+06 minLogLikelihood = 7.6359e+06 minLogLikelihood = 7.6359e+06 EM converged! ans = 78.8518 12.1990 58.0383 64.5268 51.7407 83.9677 70.8233 75.5471 45.3081 91.7808 20.8857 80.9988 56.9999 ans = 1.0e+05 * 0.0883 0.0410 0.1128 0.0295 2.4415 0.0770 0.0903 0.0822 0.3299 0.1478 0.3635 0.0116 0.0722 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.010642 precisions[0][0][1] = 0.015616 precisions[0][0][2] = 0.009415 precisions[0][0][3] = 0.018398 precisions[0][0][4] = 0.002024 precisions[0][0][5] = 0.011396 precisions[0][0][6] = 0.010524 precisions[0][0][7] = 0.011027 precisions[0][0][8] = 0.005505 precisions[0][0][9] = 0.008227 precisions[0][0][10] = 0.005245 precisions[0][0][11] = 0.029335 precisions[0][0][12] = 0.011771 means[0][0] = 78.851784 means[0][1] = 12.199025 means[0][2] = 58.038280 means[0][3] = 64.526833 means[0][4] = 51.740685 means[0][5] = 83.967735 means[0][6] = 70.823303 means[0][7] = 75.547142 means[0][8] = 45.308071 means[0][9] = 91.780815 means[0][10] = 20.885750 means[0][11] = 80.998779 means[0][12] = 56.999908 Resolution level 1 iteration 2 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 3.5649 seconds minLogLikelihoodTimesPrior = 7.6903e+06 Resolution level 1 iteration 2 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.56822 voxels in 1.7791 seconds minLogLikelihoodTimesPrior = 7.6892e+06 Resolution level 1 iteration 2 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.33038 voxels in 1.7786 seconds minLogLikelihoodTimesPrior = 7.6871e+06 Resolution level 1 iteration 2 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.5991 voxels in 1.7461 seconds minLogLikelihoodTimesPrior = 7.6834e+06 Resolution level 1 iteration 2 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.12972 voxels in 2.9213 seconds minLogLikelihoodTimesPrior = 7.6826e+06 Resolution level 1 iteration 2 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.20018 voxels in 1.7599 seconds minLogLikelihoodTimesPrior = 7.6812e+06 Resolution level 1 iteration 2 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.55179 voxels in 1.8203 seconds minLogLikelihoodTimesPrior = 7.6789e+06 Resolution level 1 iteration 2 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.59703 voxels in 1.8022 seconds minLogLikelihoodTimesPrior = 7.6752e+06 Resolution level 1 iteration 2 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.0269 voxels in 1.796 seconds minLogLikelihoodTimesPrior = 7.6693e+06 Resolution level 1 iteration 2 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.14176 voxels in 8.7033 seconds minLogLikelihoodTimesPrior = 7.6692e+06 Resolution level 1 iteration 2 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.056896 voxels in 1.7904 seconds minLogLikelihoodTimesPrior = 7.6691e+06 Resolution level 1 iteration 2 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.031677 voxels in 1.7883 seconds minLogLikelihoodTimesPrior = 7.6690e+06 Resolution level 1 iteration 2 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.069879 voxels in 1.7703 seconds minLogLikelihoodTimesPrior = 7.6688e+06 Resolution level 1 iteration 2 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13658 voxels in 1.9474 seconds minLogLikelihoodTimesPrior = 7.6684e+06 Resolution level 1 iteration 2 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.30809 voxels in 1.8762 seconds minLogLikelihoodTimesPrior = 7.6678e+06 Resolution level 1 iteration 2 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.31366 voxels in 1.8071 seconds minLogLikelihoodTimesPrior = 7.6667e+06 Resolution level 1 iteration 2 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.080284 voxels in 10.5177 seconds minLogLikelihoodTimesPrior = 7.6666e+06 Resolution level 1 iteration 2 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0056159 voxels in 1.8923 seconds minLogLikelihoodTimesPrior = 7.6666e+06 Resolution level 1 iteration 2 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.043735 voxels in 1.842 seconds minLogLikelihoodTimesPrior = 7.6666e+06 Resolution level 1 iteration 2 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.018426 voxels in 1.8422 seconds minLogLikelihoodTimesPrior = 7.6665e+06 Iteration 3 of 7 minLogLikelihood = 7.6020e+06 minLogLikelihood = 7.6015e+06 minLogLikelihood = 7.6013e+06 minLogLikelihood = 7.6013e+06 EM converged! ans = 78.8079 12.1289 57.9950 64.3063 54.7655 84.7914 70.7458 75.0550 43.9055 91.9140 20.6759 81.0664 56.9675 ans = 1.0e+05 * 0.0890 0.0396 0.1076 0.0295 1.8359 0.0565 0.0708 0.0726 0.2878 0.1380 0.3420 0.0111 0.0727 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.010602 precisions[0][0][1] = 0.015898 precisions[0][0][2] = 0.009638 precisions[0][0][3] = 0.018418 precisions[0][0][4] = 0.002334 precisions[0][0][5] = 0.013301 precisions[0][0][6] = 0.011883 precisions[0][0][7] = 0.011734 precisions[0][0][8] = 0.005894 precisions[0][0][9] = 0.008512 precisions[0][0][10] = 0.005407 precisions[0][0][11] = 0.030012 precisions[0][0][12] = 0.011731 means[0][0] = 78.807899 means[0][1] = 12.128929 means[0][2] = 57.994984 means[0][3] = 64.306305 means[0][4] = 54.765518 means[0][5] = 84.791428 means[0][6] = 70.745773 means[0][7] = 75.054962 means[0][8] = 43.905544 means[0][9] = 91.913963 means[0][10] = 20.675892 means[0][11] = 81.066391 means[0][12] = 56.967472 Resolution level 1 iteration 3 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 3.6583 seconds minLogLikelihoodTimesPrior = 7.6639e+06 Resolution level 1 iteration 3 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.64321 voxels in 1.7322 seconds minLogLikelihoodTimesPrior = 7.6608e+06 Resolution level 1 iteration 3 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.86646 voxels in 1.7646 seconds minLogLikelihoodTimesPrior = 7.6569e+06 Resolution level 1 iteration 3 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.2845 voxels in 1.733 seconds minLogLikelihoodTimesPrior = 7.6523e+06 Resolution level 1 iteration 3 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.4485 voxels in 1.7509 seconds minLogLikelihoodTimesPrior = 7.6501e+06 Resolution level 1 iteration 3 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.55207 voxels in 1.7777 seconds minLogLikelihoodTimesPrior = 7.6486e+06 Resolution level 1 iteration 3 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.38309 voxels in 1.8484 seconds minLogLikelihoodTimesPrior = 7.6480e+06 Resolution level 1 iteration 3 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.2597 voxels in 1.8059 seconds minLogLikelihoodTimesPrior = 7.6471e+06 Resolution level 1 iteration 3 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.36617 voxels in 1.7736 seconds minLogLikelihoodTimesPrior = 7.6458e+06 Resolution level 1 iteration 3 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.54781 voxels in 3.5077 seconds minLogLikelihoodTimesPrior = 7.6448e+06 Resolution level 1 iteration 3 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.76742 voxels in 1.7522 seconds minLogLikelihoodTimesPrior = 7.6436e+06 Resolution level 1 iteration 3 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.3865 voxels in 1.7533 seconds minLogLikelihoodTimesPrior = 7.6420e+06 Resolution level 1 iteration 3 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.66413 voxels in 2.14 seconds minLogLikelihoodTimesPrior = 7.6410e+06 Resolution level 1 iteration 3 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.0062 voxels in 1.7466 seconds minLogLikelihoodTimesPrior = 7.6400e+06 Resolution level 1 iteration 3 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.55514 voxels in 1.6948 seconds minLogLikelihoodTimesPrior = 7.6390e+06 Resolution level 1 iteration 3 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.61912 voxels in 1.7015 seconds minLogLikelihoodTimesPrior = 7.6381e+06 Resolution level 1 iteration 3 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.56671 voxels in 1.7257 seconds minLogLikelihoodTimesPrior = 7.6376e+06 Resolution level 1 iteration 3 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.57888 voxels in 1.7375 seconds minLogLikelihoodTimesPrior = 7.6371e+06 Resolution level 1 iteration 3 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.43437 voxels in 1.7406 seconds minLogLikelihoodTimesPrior = 7.6362e+06 Resolution level 1 iteration 3 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.66299 voxels in 1.7053 seconds minLogLikelihoodTimesPrior = 7.6349e+06 Iteration 4 of 7 minLogLikelihood = 7.5585e+06 minLogLikelihood = 7.5571e+06 minLogLikelihood = 7.5568e+06 minLogLikelihood = 7.5567e+06 minLogLikelihood = 7.5567e+06 EM converged! ans = 78.7267 12.0123 57.9431 63.7519 60.0051 86.1883 70.5461 74.3288 42.2568 92.0187 20.4456 81.1359 56.9434 ans = 1.0e+04 * 0.8947 0.3704 1.0264 0.3003 6.3335 0.3059 0.4473 0.6020 2.4093 1.2786 3.1891 0.1058 0.7310 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.010572 precisions[0][0][1] = 0.016431 precisions[0][0][2] = 0.009871 precisions[0][0][3] = 0.018249 precisions[0][0][4] = 0.003974 precisions[0][0][5] = 0.018080 precisions[0][0][6] = 0.014951 precisions[0][0][7] = 0.012889 precisions[0][0][8] = 0.006443 precisions[0][0][9] = 0.008844 precisions[0][0][10] = 0.005600 precisions[0][0][11] = 0.030748 precisions[0][0][12] = 0.011696 means[0][0] = 78.726746 means[0][1] = 12.012293 means[0][2] = 57.943146 means[0][3] = 63.751888 means[0][4] = 60.005081 means[0][5] = 86.188324 means[0][6] = 70.546059 means[0][7] = 74.328796 means[0][8] = 42.256763 means[0][9] = 92.018654 means[0][10] = 20.445551 means[0][11] = 81.135880 means[0][12] = 56.943375 Resolution level 1 iteration 4 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 3.4823 seconds minLogLikelihoodTimesPrior = 7.6326e+06 Resolution level 1 iteration 4 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.13886 voxels in 4.6686 seconds minLogLikelihoodTimesPrior = 7.6325e+06 Resolution level 1 iteration 4 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.053412 voxels in 1.7344 seconds minLogLikelihoodTimesPrior = 7.6324e+06 Resolution level 1 iteration 4 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.1148 voxels in 1.6833 seconds minLogLikelihoodTimesPrior = 7.6322e+06 Resolution level 1 iteration 4 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17918 voxels in 1.7237 seconds minLogLikelihoodTimesPrior = 7.6319e+06 Resolution level 1 iteration 4 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.3822 voxels in 1.7265 seconds minLogLikelihoodTimesPrior = 7.6316e+06 Resolution level 1 iteration 4 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.44157 voxels in 1.7092 seconds minLogLikelihoodTimesPrior = 7.6310e+06 Resolution level 1 iteration 4 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.63739 voxels in 1.7565 seconds minLogLikelihoodTimesPrior = 7.6304e+06 Resolution level 1 iteration 4 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.59954 voxels in 1.7892 seconds minLogLikelihoodTimesPrior = 7.6294e+06 Resolution level 1 iteration 4 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.69093 voxels in 3.6088 seconds minLogLikelihoodTimesPrior = 7.6290e+06 Resolution level 1 iteration 4 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.575 voxels in 1.8531 seconds minLogLikelihoodTimesPrior = 7.6284e+06 Resolution level 1 iteration 4 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.47806 voxels in 1.7213 seconds minLogLikelihoodTimesPrior = 7.6274e+06 Resolution level 1 iteration 4 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.51661 voxels in 2.8667 seconds minLogLikelihoodTimesPrior = 7.6266e+06 Resolution level 1 iteration 4 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.56699 voxels in 1.6863 seconds minLogLikelihoodTimesPrior = 7.6256e+06 Resolution level 1 iteration 4 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.19683 voxels in 3.9926 seconds minLogLikelihoodTimesPrior = 7.6252e+06 Resolution level 1 iteration 4 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.4521 voxels in 1.8815 seconds minLogLikelihoodTimesPrior = 7.6248e+06 Resolution level 1 iteration 4 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.62361 voxels in 1.7286 seconds minLogLikelihoodTimesPrior = 7.6243e+06 Resolution level 1 iteration 4 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.62395 voxels in 1.7206 seconds minLogLikelihoodTimesPrior = 7.6238e+06 Resolution level 1 iteration 4 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.44228 voxels in 1.7078 seconds minLogLikelihoodTimesPrior = 7.6229e+06 Resolution level 1 iteration 4 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.34247 voxels in 3.5154 seconds minLogLikelihoodTimesPrior = 7.6222e+06 Iteration 5 of 7 minLogLikelihood = 7.5419e+06 minLogLikelihood = 7.5414e+06 minLogLikelihood = 7.5412e+06 minLogLikelihood = 7.5411e+06 minLogLikelihood = 7.5410e+06 EM converged! ans = 78.6854 11.9257 57.9347 63.4145 63.7259 86.8337 70.5491 73.9739 41.5712 92.0486 20.3798 81.1597 56.9308 ans = 1.0e+04 * 0.8962 0.3510 1.0212 0.3279 1.0268 0.2276 0.3426 0.5517 2.2425 1.2395 3.1204 0.1041 0.7350 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.010563 precisions[0][0][1] = 0.016879 precisions[0][0][2] = 0.009895 precisions[0][0][3] = 0.017463 precisions[0][0][4] = 0.009868 precisions[0][0][5] = 0.020959 precisions[0][0][6] = 0.017086 precisions[0][0][7] = 0.013463 precisions[0][0][8] = 0.006678 precisions[0][0][9] = 0.008982 precisions[0][0][10] = 0.005661 precisions[0][0][11] = 0.030992 precisions[0][0][12] = 0.011664 means[0][0] = 78.685387 means[0][1] = 11.925660 means[0][2] = 57.934689 means[0][3] = 63.414524 means[0][4] = 63.725887 means[0][5] = 86.833725 means[0][6] = 70.549110 means[0][7] = 73.973930 means[0][8] = 41.571213 means[0][9] = 92.048592 means[0][10] = 20.379847 means[0][11] = 81.159737 means[0][12] = 56.930782 Resolution level 1 iteration 5 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.5 voxels in 5.1534 seconds minLogLikelihoodTimesPrior = 7.6210e+06 Resolution level 1 iteration 5 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.31282 voxels in 1.6822 seconds minLogLikelihoodTimesPrior = 7.6206e+06 Resolution level 1 iteration 5 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.45325 voxels in 2.8349 seconds minLogLikelihoodTimesPrior = 7.6203e+06 Resolution level 1 iteration 5 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.18374 voxels in 3.3583 seconds minLogLikelihoodTimesPrior = 7.6201e+06 Resolution level 1 iteration 5 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.34099 voxels in 1.7093 seconds minLogLikelihoodTimesPrior = 7.6197e+06 Resolution level 1 iteration 5 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.34422 voxels in 1.72 seconds minLogLikelihoodTimesPrior = 7.6190e+06 Resolution level 1 iteration 5 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.31746 voxels in 2.9076 seconds minLogLikelihoodTimesPrior = 7.6184e+06 Resolution level 1 iteration 5 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.29283 voxels in 4.009 seconds minLogLikelihoodTimesPrior = 7.6183e+06 Resolution level 1 iteration 5 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.28331 voxels in 1.7767 seconds minLogLikelihoodTimesPrior = 7.6182e+06 Resolution level 1 iteration 5 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17857 voxels in 1.8846 seconds minLogLikelihoodTimesPrior = 7.6180e+06 Resolution level 1 iteration 5 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.37156 voxels in 1.8946 seconds minLogLikelihoodTimesPrior = 7.6179e+06 Resolution level 1 iteration 5 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.01918 voxels in 5.642 seconds minLogLikelihoodTimesPrior = 7.6179e+06 Resolution level 1 iteration 5 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00092115 voxels in 1.9368 seconds minLogLikelihoodTimesPrior = 7.6179e+06 Resolution level 1 iteration 5 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.011338 voxels in 5.1766 seconds minLogLikelihoodTimesPrior = 7.6179e+06 Resolution level 1 iteration 5 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00026125 voxels in 1.6572 seconds minLogLikelihoodTimesPrior = 7.6179e+06 Resolution level 1 iteration 5 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00045314 voxels in 1.6687 seconds minLogLikelihoodTimesPrior = 7.6179e+06 Resolution level 1 iteration 5 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0060539 voxels in 1.6829 seconds minLogLikelihoodTimesPrior = 7.6179e+06 Resolution level 1 iteration 5 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00040795 voxels in 1.6938 seconds minLogLikelihoodTimesPrior = 7.6179e+06 Resolution level 1 iteration 5 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.00066418 voxels in 1.6861 seconds minLogLikelihoodTimesPrior = 7.6179e+06 Resolution level 1 iteration 5 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.0095982 voxels in 1.6838 seconds minLogLikelihoodTimesPrior = 7.6179e+06 Iteration 6 of 7 minLogLikelihood = 7.5359e+06 minLogLikelihood = 7.5357e+06 minLogLikelihood = 7.5356e+06 EM converged! ans = 78.6707 11.8918 57.9360 63.2553 64.5792 87.0470 70.5762 73.8359 41.3316 92.0591 20.3609 81.1665 56.9238 ans = 1.0e+04 * 0.8953 0.3439 1.0228 0.3539 0.4642 0.2144 0.3204 0.5352 2.1918 1.2260 3.1018 0.1036 0.7368 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.010569 precisions[0][0][1] = 0.017053 precisions[0][0][2] = 0.009888 precisions[0][0][3] = 0.016810 precisions[0][0][4] = 0.014678 precisions[0][0][5] = 0.021598 precisions[0][0][6] = 0.017666 precisions[0][0][7] = 0.013670 precisions[0][0][8] = 0.006755 precisions[0][0][9] = 0.009031 precisions[0][0][10] = 0.005678 precisions[0][0][11] = 0.031065 precisions[0][0][12] = 0.011650 means[0][0] = 78.670670 means[0][1] = 11.891813 means[0][2] = 57.936020 means[0][3] = 63.255322 means[0][4] = 64.579231 means[0][5] = 87.047050 means[0][6] = 70.576248 means[0][7] = 73.835899 means[0][8] = 41.331638 means[0][9] = 92.059105 means[0][10] = 20.360884 means[0][11] = 81.166512 means[0][12] = 56.923752 Resolution level 1 iteration 6 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.5 voxels in 5.1115 seconds minLogLikelihoodTimesPrior = 7.6175e+06 Resolution level 1 iteration 6 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.31774 voxels in 1.7081 seconds minLogLikelihoodTimesPrior = 7.6174e+06 Resolution level 1 iteration 6 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.18454 voxels in 1.6774 seconds minLogLikelihoodTimesPrior = 7.6172e+06 Resolution level 1 iteration 6 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.34282 voxels in 1.7166 seconds minLogLikelihoodTimesPrior = 7.6169e+06 Resolution level 1 iteration 6 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.18285 voxels in 2.9167 seconds minLogLikelihoodTimesPrior = 7.6167e+06 Resolution level 1 iteration 6 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.29738 voxels in 1.7097 seconds minLogLikelihoodTimesPrior = 7.6165e+06 Resolution level 1 iteration 6 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.28055 voxels in 3.4193 seconds minLogLikelihoodTimesPrior = 7.6163e+06 Resolution level 1 iteration 6 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.27435 voxels in 1.7289 seconds minLogLikelihoodTimesPrior = 7.6162e+06 Resolution level 1 iteration 6 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.15223 voxels in 3.317 seconds minLogLikelihoodTimesPrior = 7.6160e+06 Resolution level 1 iteration 6 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.18402 voxels in 1.6545 seconds minLogLikelihoodTimesPrior = 7.6158e+06 Resolution level 1 iteration 6 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.29879 voxels in 1.6775 seconds minLogLikelihoodTimesPrior = 7.6155e+06 Resolution level 1 iteration 6 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.23205 voxels in 2.842 seconds minLogLikelihoodTimesPrior = 7.6152e+06 Resolution level 1 iteration 6 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.38376 voxels in 1.6762 seconds minLogLikelihoodTimesPrior = 7.6147e+06 Resolution level 1 iteration 6 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.5808 voxels in 1.6473 seconds minLogLikelihoodTimesPrior = 7.6141e+06 Resolution level 1 iteration 6 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.93059 voxels in 1.6484 seconds minLogLikelihoodTimesPrior = 7.6137e+06 Resolution level 1 iteration 6 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.64598 voxels in 1.667 seconds minLogLikelihoodTimesPrior = 7.6134e+06 Resolution level 1 iteration 6 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17337 voxels in 3.339 seconds minLogLikelihoodTimesPrior = 7.6133e+06 Resolution level 1 iteration 6 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.030488 voxels in 1.6474 seconds minLogLikelihoodTimesPrior = 7.6133e+06 Resolution level 1 iteration 6 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.096736 voxels in 1.657 seconds minLogLikelihoodTimesPrior = 7.6132e+06 Resolution level 1 iteration 6 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.056362 voxels in 1.6478 seconds minLogLikelihoodTimesPrior = 7.6131e+06 Iteration 7 of 7 minLogLikelihood = 7.5274e+06 minLogLikelihood = 7.5271e+06 minLogLikelihood = 7.5270e+06 EM converged! ans = 78.6450 11.8476 57.9563 62.9691 65.1109 87.4241 70.6731 73.5905 40.9622 92.0825 20.3529 81.1776 56.9256 ans = 1.0e+04 * 0.8923 0.3349 1.0216 0.3977 0.2269 0.1950 0.2859 0.5033 2.1040 1.2003 3.0903 0.1027 0.7368 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.010587 precisions[0][0][1] = 0.017280 precisions[0][0][2] = 0.009894 precisions[0][0][3] = 0.015857 precisions[0][0][4] = 0.020994 precisions[0][0][5] = 0.022648 precisions[0][0][6] = 0.018702 precisions[0][0][7] = 0.014096 precisions[0][0][8] = 0.006894 precisions[0][0][9] = 0.009128 precisions[0][0][10] = 0.005688 precisions[0][0][11] = 0.031200 precisions[0][0][12] = 0.011650 means[0][0] = 78.645042 means[0][1] = 11.847645 means[0][2] = 57.956249 means[0][3] = 62.969078 means[0][4] = 65.110916 means[0][5] = 87.424141 means[0][6] = 70.673134 means[0][7] = 73.590485 means[0][8] = 40.962193 means[0][9] = 92.082520 means[0][10] = 20.352867 means[0][11] = 81.177589 means[0][12] = 56.925644 Resolution level 1 iteration 7 deformation iterations 1 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1 voxels in 3.342 seconds minLogLikelihoodTimesPrior = 7.6123e+06 Resolution level 1 iteration 7 deformation iterations 2 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.46555 voxels in 2.5491 seconds minLogLikelihoodTimesPrior = 7.6121e+06 Resolution level 1 iteration 7 deformation iterations 3 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.19139 voxels in 3.8243 seconds minLogLikelihoodTimesPrior = 7.6120e+06 Resolution level 1 iteration 7 deformation iterations 4 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.19487 voxels in 1.6594 seconds minLogLikelihoodTimesPrior = 7.6120e+06 Resolution level 1 iteration 7 deformation iterations 5 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.25925 voxels in 1.6641 seconds minLogLikelihoodTimesPrior = 7.6119e+06 Resolution level 1 iteration 7 deformation iterations 6 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.19292 voxels in 1.6516 seconds minLogLikelihoodTimesPrior = 7.6118e+06 Resolution level 1 iteration 7 deformation iterations 7 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.21359 voxels in 1.6566 seconds minLogLikelihoodTimesPrior = 7.6117e+06 Resolution level 1 iteration 7 deformation iterations 8 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.27732 voxels in 2.573 seconds minLogLikelihoodTimesPrior = 7.6117e+06 Resolution level 1 iteration 7 deformation iterations 9 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.1171 voxels in 1.6529 seconds minLogLikelihoodTimesPrior = 7.6117e+06 Resolution level 1 iteration 7 deformation iterations 10 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.14201 voxels in 3.2956 seconds minLogLikelihoodTimesPrior = 7.6116e+06 Resolution level 1 iteration 7 deformation iterations 11 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.040325 voxels in 1.6394 seconds minLogLikelihoodTimesPrior = 7.6116e+06 Resolution level 1 iteration 7 deformation iterations 12 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.029118 voxels in 1.6525 seconds minLogLikelihoodTimesPrior = 7.6116e+06 Resolution level 1 iteration 7 deformation iterations 13 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.046644 voxels in 1.6869 seconds minLogLikelihoodTimesPrior = 7.6116e+06 Resolution level 1 iteration 7 deformation iterations 14 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.093761 voxels in 1.7359 seconds minLogLikelihoodTimesPrior = 7.6115e+06 Resolution level 1 iteration 7 deformation iterations 15 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.17857 voxels in 1.7124 seconds minLogLikelihoodTimesPrior = 7.6113e+06 Resolution level 1 iteration 7 deformation iterations 16 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.33681 voxels in 1.6973 seconds minLogLikelihoodTimesPrior = 7.6110e+06 Resolution level 1 iteration 7 deformation iterations 17 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.58037 voxels in 1.6712 seconds minLogLikelihoodTimesPrior = 7.6106e+06 Resolution level 1 iteration 7 deformation iterations 18 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.0315 voxels in 1.6566 seconds minLogLikelihoodTimesPrior = 7.6102e+06 Resolution level 1 iteration 7 deformation iterations 19 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 1.4164 voxels in 1.6581 seconds minLogLikelihoodTimesPrior = 7.6100e+06 Resolution level 1 iteration 7 deformation iterations 20 Number of Meshes: 1 Using CG optimizer Did one deformation step of max. 0.90132 voxels in 1.6439 seconds minLogLikelihoodTimesPrior = 7.6100e+06 Smoothing mesh collection with kernel size 1.000000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 done numberOfImages = 1 Image: 0 Iteration 1 of 5