Dear FS experts <br /><br />I'm trying to run the &quot;recon-all -s subjid -localGI&quot; in both terminal and matlab, and neither of them is working.<br />I'm using currently version of FS and matlab R2009b.<br /><br />the following error alwais apair:<br /><br />INFO: FreeSurfer build stamps do not match<br />Subject Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v4.2.0<br />Current Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0<br />INFO: SUBJECTS_DIR is /root/trabajo/freesurfer/subjects<br />Actual FREESURFER_HOME /root/trabajo/freesurfer<br />-rwxr-xr-x  1 root root 6867734 Oct 16 15:23 /root/trabajo/freesurfer/subjects/c_Macarena/scripts/recon-all.log<br />Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT 2006 x86_64 x86_64 x86_64 GNU/Linux<br />/root/trabajo/freesurfer/subjects/c_Macarena/surf<br />#--------------------------------------------<br />#@# Local Gyrification Index lh Tue Oct 16 15:24:31 CEST 2012<br /><br /> mris_compute_lgi --i lh.pial<br /><br />ERROR: Matlab is required to run mris_compute_lgi!<br />Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT 2006 x86_64 x86_64 x86_64 GNU/Linux<br /><br />recon-all -s c_Macarena exited with ERRORS at Tue Oct 16 15:24:31 CEST 2012<br /><br /><br /><br /><br />Matlab exist on the  startup.m file as:<br /><br />%------------ FreeSurfer -----------------------------%<br />fshome = getenv('FREESURFER_HOME');<br />fsmatlab = sprintf('%s/root/trabajo/freesurfer/matlab',fshome);<br />path(path,fsmatlab);<br />clear fshome fsmatlab;<br />%-----------------------------------------------------%<br /><br /><br />Can anyone help me on this?<br /><br />Best Regards,<br />Gabriel<br /><br />