I attemting to run brainstem/ hippocampus/ thalamus segmentation with FS 7.1 and there seems to be a problem with environment variables. Based on comments on other forums, I cannot install GlibC (if this is the case) since it's a cluster. Are there any methods that can be used to avoid this limitation?

FreeSurfer version: freesurfer-linux-centos7_x86_64-7.1.0

Platform: CentOS Linux 7 (Core)

uname -a: Linux cedar5.cedar.computecanada.ca 3.10.0-1062.12.1.el7.x86_64 #1 SMP Tue Feb 4 23:02:59 UTC 2020 x86_64 GNU/Linux

error:

Setting up environment variables
---
grep: relocation error: /lib64/libc.so.6: symbol _dl_starting_up, version GLIBC_PRIVATE not defined in file ld-linux-x86-64.so.2 with link time reference
LD_LIBRARY_PATH is .:/lib64:/home/user/freesurfer/MCRv84//runtime/glnxa64:/home/user/freesurfer/MCRv84//bin/glnxa64:/home/user/freesurfer/MCRv84//sys/os/glnxa64:/home/user/freesurfer/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/home/user/freesurfer/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/home/userfreesurfer/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/home/userfreesurfer/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64:/opt/software/slurm/lib
od: relocation error: /lib64/libc.so.6: symbol _dl_starting_up, version GLIBC_PRIVATE not defined in file ld-linux-x86-64.so.2 with link time reference
tr: relocation error: /lib64/libc.so.6: symbol _dl_starting_up, version GLIBC_PRIVATE not defined in file ld-linux-x86-64.so.2 with link time reference
Registering imageDump.mgz to mask from ASEG
cp: relocation error: /lib64/libc.so.6: symbol _dl_starting_up, version GLIBC_PRIVATE not defined in file ld-linux-x86-64.so.2 with link time reference
gzip: relocation error: /lib64/libc.so.6: symbol _dl_starting_up, version GLIBC_PRIVATE not defined in file ld-linux-x86-64.so.2 with link time reference
ERROR: problem reading fname
SWITCH expression must be a scalar or string constant.

Error in myMRIread>load_mgh (line 550)



Error in myMRIread>myMRIread_aux (line 92)



Error in myMRIread (line 63)



Error in SegmentThalamicNuclei (line 278)



MATLAB:badSwitchExpression
rm: relocation error: /lib64/libc.so.6: symbol _dl_starting_up, version GLIBC_PRIVATE not defined in file ld-linux-x86-64.so.2 with link time reference
255

Best regards,

Alex