Yes, a part of the brain appears missing. See attached screenshot.

I did not use a configuration file, I simply accepted all defaults and kicked off the process with -s and -i flags.

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Re: [Freesurfer] Freesurfer 6.0 - Tracula - Segmentation fault

Yendiki, Anastasia Wed, 19 Sep 2018 09:02:47 -0700

Hi Matt – It looks like some sort of registration issue. When you display the

FA map (dmri/dtifit_FA) and structural segmentation in diffusion space

(label/diff/aparc+aseg), do they look fine? Is there any part of the brain that

is cut off from any of the images? Also, can you attach your config file?

Thanks!

a.y