hi bruce,

i visualized these two subjects using freeview and nothing looked out of the ordinary.

$ cat /mindhive/xnat/surfaces/adhd200/3684229/stats/aseg.stats | grep -i amy
 13  18      1764     1764.0  Left-Amygdala                     64.7514     7.5831    36.0000    90.0000    54.0000 
 28  54      1706     1706.0  Right-Amygdala                    64.3900     7.7036    11.0000    89.0000    78.0000 
$ cat /mindhive/xnat/surfaces/adhd200/0010079/stats/aseg.stats | grep -i amy
 13  18      1543     1543.0  Left-Amygdala                     58.6062     7.8497    31.0000    90.0000    59.0000 
 28  54      1706     1706.0  Right-Amygdala                    60.1369     7.7914    31.0000    84.0000    53.0000 

does this generation take partial volume into account? this is the default output from running recon-all (from 5.1.0).

cheers,

satra


On Mon, Jul 8, 2013 at 5:14 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
Hi Satra

this seems vanishingly unlikely to me, particularly with partial volume correction. Have you visualize some of the subjects that have the same structure volume?

Bruce

On Mon, 8 Jul 2013, Satrajit Ghosh wrote:

a quick update. the following fiddle will show the number of subjects that
have an identical the same Right Amygdala volume. It simply plots a
histogram of the counts per volume (scroll to the bottom of the result
window).
http://fiddle.jshell.net/satra/MXKY6/6/

cheers,

satra


On Mon, Jul 8, 2013 at 1:07 PM, Satrajit Ghosh <satra@mit.edu> wrote:
      hi,

trying to figure out the likelihood of identical subcortical volumes
across individuals. i'm noticing this in some data processed with
FreeSurfer 5.1.0.

just to give some probabilities - these are out of about 963
participants.

and there are several such small clusters of identical numbers - never
exceeding 6 participants i believe.

cheers,

satra
0021003
aseg.stats
http://freesurfer.net/fswiki/terms/Right-Hippocampus
"4142.0"^^<http://www.w3.org/2001/XMLSchema-datatypes#float>
0015035
aseg.stats
http://freesurfer.net/fswiki/terms/Right-Hippocampus
"4142.0"^^<http://www.w3.org/2001/XMLSchema-datatypes#float>
3976121
aseg.stats
http://freesurfer.net/fswiki/terms/Right-Hippocampus
"4142.0"^^<http://www.w3.org/2001/XMLSchema-datatypes#float>
1623716
aseg.stats
http://freesurfer.net/fswiki/terms/Right-Amygdala
"1603.0"^^<http://www.w3.org/2001/XMLSchema-datatypes#float>
0023005
aseg.stats
http://freesurfer.net/fswiki/terms/Right-Amygdala
"1603.0"^^<http://www.w3.org/2001/XMLSchema-datatypes#float>
0023008
aseg.stats
http://freesurfer.net/fswiki/terms/Right-Amygdala
"1603.0"^^<http://www.w3.org/2001/XMLSchema-datatypes#float>
0027025
aseg.stats
http://freesurfer.net/fswiki/terms/Right-Amygdala
"1603.0"^^<http://www.w3.org/2001/XMLSchema-datatypes#float>
1341865
aseg.stats
http://freesurfer.net/fswiki/terms/Right-Amygdala
"1603.0"^^<http://www.w3.org/2001/XMLSchema-datatypes#float>
2947936
aseg.stats
http://freesurfer.net/fswiki/terms/Right-Amygdala
"1603.0"^^<http://www.w3.org/2001/XMLSchema-datatypes#float>






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