Hi Adil,
My understanding is that, you can always change the location of
SUBJECTS_DIR. Just use this command:
setenv SUBJECTS_DIR <Your location of interest>
You do not need to mention this new address in your recon-all command.
Good luck
> HI,1-I'm working with FreeSurfer that is on a server. I don't have
> permission to create files under the $SUBJECTS_DIR. Is there any way I
> can specify -subject to be in a directory for which I do have permission?
> for example: recon-all -subject /location of the file or my own
> subject_dir location -all
> 2-Also, Is there a way to segment the cortices as a whole, like left and
> right frontal cx, parietal cx, temporal cx, occipital cx?
>
>
> Thanks,
> AJ_______________________________________________
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