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​Hi Timothy, 


Did you specify for -sd <file path> as well?


Best,

Raquel


Van: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> namens Timothy Brackins <timothy.brackins@stonybrook.edu>
Verzonden: vrijdag 19 maart 2021 03:55
Aan: freesurfer@nmr.mgh.harvard.edu
Onderwerp: [Freesurfer] Error flag i <file path> unrecognized
 

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Hello FreeSurfer Developers,

I am brand new to using freesurfer, just learning for the first time. I have freesurfer installed and sourced on linux Ubuntu 18.04.5 LTS. My NfTI files are stored on a windows share drive which I mount to the linux machine. 

Upon entering the recon-all command I receive the Error flag i <file path> unrecognized. I searched the archives but did not see a similar issue.Thank you in advance for your time and help with this. 

--
Timothy Brackins 
Doctoral Student, Cognitive Sciences
Cognitive Aging and Memory (CAM) Lab
Stony Brook University
Email: timothy.brackins@stonybrook.edu