Hi Corinna,

try to open
/home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz

in freeview to see if maybe the file is corrupted.

Best, Martin


On 04/25/2014 03:46 PM, Corinna Bauer wrote:
Hello,
I am on the recon-all -long step of the longitudinal processing stream and the final time point exits with errors at the mri_convert stage.

mri_convert -at /home/Documents/longitudinal_morph/meta/test_subject_template/mri/transforms/test_subject_2ndpostop_to_test_subject_template.lta -odt uchar -rt cubic /home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz /home/Documents/longitudinal_morph/meta/test_subject_2ndpostop.long.test_subject_template/mri/orig.mgz

mghRead(/home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz): could not read 262144 bytes at slice 4

I still have plenty of space left on the drive


             total       used       free     shared    buffers     cached
Mem:      16348132   14856524    1491608          0     534916    6193928
-/+ buffers/cache:    8127680    8220452
Swap:     16690172     573232   16116940



Any suggestions? The two previous timepoints finished without error.


Corinna


_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- 
Martin Reuter, Ph.D.

Instructor in Neurology
  Harvard Medical School
Assistant in Neuroscience
  Dept. of Radiology, Massachusetts General Hospital
  Dept. of Neurology, Massachusetts General Hospital
Research Affiliate
  Computer Science and Artificial Intelligence Lab,
  Dept. of Electrical Engineering and Computer Science,
  Massachusetts Institute of Technology

A.A.Martinos Center for Biomedical Imaging
149 Thirteenth Street, Suite 2301
Charlestown, MA 02129

Phone: +1-617-724-5652
Email: 
   mreuter@nmr.mgh.harvard.edu
   reuter@mit.edu
Web  : http://reuter.mit.edu