Hello,

That worked! Thank you very much. Also, I am trying to understand the information given by mri_segstats and I can find info on the different arguments for the command but not on how to interpret the output. Any recommendations?

Thank you!

Eva

From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve
Sent: 22 August 2017 17:33
To: freesurfer@nmr.mgh.harvard.edu
Subject: EXT: Re: [Freesurfer] Freesurfer tutorial

try it without doing any reshaping. If that works, then I'll edit the wiki

On 8/22/17 12:00 PM, Esteban, Eva(GE Healthcare) wrote:

Good afternoon,

I am new to Freesurfer and following the instructions to find out the Cortical Thickness of a Volume-defined ROI(http://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness), everything goes well until step 4. Even if I try to use –reshape-factor 7 as suggested, it reshapes it to 6 and so the next step gives an error because the segmentation is shaped to 7. Would anyone mind giving me some guidance on how to do it?

Many thanks,

Eva

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