It looks like the data are fairly low quality. This will require some manual intervention (control points, fixing topologogical errors, etc). See our wiki on manual interventions

On 6/15/2021 10:52 AM, Rosalia Dacosta Aguayo wrote:

External Email - Use Caution

Here is what I am referring to:

On Mon, Jun 14, 2021 at 7:47 PM Rosalia Dacosta Aguayo <rdacostaa@gmail.com> wrote:

Dear Freesurfer's experts,

I have run recon-all all to one subject with fmriprep.

The work finished without errors. However, after inspecting the results, I have seen that there are some grey regions (mainly frontal and temporal ones) that have not been fully covered.

I wonder how I could proceed in order to improve the segmentation.

Kind regards,

Rosie
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