Hi

I used FreeSurfer to automatically segment subcortical structures, and I would now like to transfer the data to Matlab. I am looking for a way to load the coordinates of all structures (or, if it isn't possible, for each structure, by its number) to Matlab, in Talairach coordinates. Is this possible? If so - how can it be done?

I use BrainVoyager, not FSL, for analysis, and I would like to somehow use the segmentation from FreeSurfer for analysis in Matlab, in combination with data I have from BrainVoyager (the functional data). I don't necessarily need talairach coordinates, but otherwise I'm not sure how it would be possible to convert between FreeSurfer and BrainVoyager.

Any suggestions?
Thanks!
Aya