Hi Taka - Does it work when you remove the "--1d" from the command line? I think that must be an error in the documentation.
Anastasia.
From:
freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Tarumi Takashi <takatr@gmail.com>
Sent:
Wednesday, January 12, 2022 7:04 PM
To:
freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject:
[Freesurfer] mri_glmfit-sim error: Flag --1d unrecognized
External Email - Use Caution
Dear FreeSurfer Developers:
I am attempting to perform cluster-wise correction for the along-tract measures, as described on the Tract statistics tutorial (
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics
). But, when I run the command below, the flag --1d is not recognized.
Command: mri_glmfit-sim --glmdir cc.bodyp.FA_Avg.glmdir --1d --cwp .05 --perm 1000 1.3 pos
Error: Flag --1d unrecognized.
I could not find similar errors reported. Does anyone have any thoughts on how to trouble-shoot this? The FreeSurfer version I'm using is 7.2.0 on an M1 Mac machine with macOS 12.1. Thank you so much for your help.
Sincerely,
Taka