---------- Forwarded message ----------
From: Jordi Delgado <jordidem@pic.es>
Date: 2009/10/30
Subject: FreeSurfer Error: bits = 0 not supported.
To: freesurfer@nmr.mgh.harvard.edu


Hello,

My name is Jordi Delgado, I work with FreeSurfer on a cluster of machines. Yesterday I sent some subjects to process and for three of them I recived in the Output Log from PBS the following message:

Subject Stamp: freesurfer-Linux-centos4-stable-pub-v4.3.1
Current Stamp: freesurfer-Linux-centos4-stable-pub-v4.3.1
INFO: SUBJECTS_DIR is /nfs/arpon/PROJCT/FXTAS/proc/FREESURFER/OutPBS
Actual FREESURFER_HOME /nfs/arpon/SOFTWR/freesurfer
Linux td172.pic.es 2.6.18-128.7.1.el5 #1 SMP Mon Aug 24 08:12:52 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux
/nfs/arpon/PROJCT/FXTAS/proc/FREESURFER/OutPBS/PCC_030

 mri_convert /nfs/arpon/PROJCT/FXTAS/orig/DICOM/T13D/PCC_030/PCC_030_0001 /nfs/arpon/PROJCT/FXTAS/proc/FREESURFER/OutPBS/PCC_030/mri/orig/001.mgz

mri_convert /nfs/arpon/PROJCT/FXTAS/orig/DICOM/T13D/PCC_030/PCC_030_0001 /nfs/arpon/PROJCT/FXTAS/proc/FREESURFER/OutPBS/PCC_030/mri/orig/001.mgz
$Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $
reading from /nfs/arpon/PROJCT/FXTAS/orig/DICOM/T13D/PCC_030/PCC_030_0001...
Starting DICOMRead2()
dcmfile = /nfs/arpon/PROJCT/FXTAS/orig/DICOM/T13D/PCC_030/PCC_030_0001
dcmdir = /nfs/arpon/PROJCT/FXTAS/orig/DICOM/T13D/PCC_030
WARNING: tag ImageNumber not found
WARNING: tag image orientation not found
Ref Series No = 301
ERROR: bits = 0 not supported.
Send email to freesurfer@nmr.mgh.harvard.edu
Linux  2.6.18-128.7.1.el5 #1 SMP Mon Aug 24 08:12:52 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux

recon-all exited with ERRORS at Thu Oct 29 18:26:01 CET 2009

After revising the freesurfer implementation and verify that other subjects have been processed correctly I noted that three subjects start their slices numeration with 0001 up to 0172 and the rest started (the correctly finished subjects) by 0002 up to 0171. So I searched this error in the freeSurfer wiki and google and I didn't found anything. What is happening? Is an image problem?

Thank you in advance,


--
Jordi Delgado Mengual
PIC (Port d'Informació Científica)
Campus UAB, Edificio D
E-08193 Bellaterra, Barcelona
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http://www.pic.es
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