Is gunzip in your path? When you open a shell and type
which gunzip

what is printed out?


On 07/30/2014 10:45 AM, Sarina Iwabuchi wrote:

Hi Bruce,

It still shows the same error:

set: Variable name must begin with a letter.

gunzip: Command not found.

ERROR: problem reading fname

set: Variable name must begin with a letter.

rm: Command not found.

SWITCH expression must be a scalar or string constant.

Error in load_mgh (line 158)

switch type

Error in MRIread (line 87)

  [mri.vol, M, mr_parms, volsz] = load_mgh(fspec,[],[],headeronly);

Sarina

On 30 Jul 2014, at 14:23, Bruce Fischl wrote:

Hi Sarina,

you need to have $FREESURFER_HOME/matlab in your matlab path. Try:

addpath(sprintf('%s/matlab', getenv('FREESURFER_HOME')))

cheers

Bruce

On Wed,

30 Jul 2014, Sarina Iwabuchi wrote:

Hi Doug,

I get the following error:

Undefined function 'MRIread' for input arguments of type 'char'.

Sarina

On 29 Jul 2014, at 18:34, Douglas N Greve wrote:

     a =

MRIread('/Volumes/HD-PNTU3/MISSEDDATA/extn003/surf/tmp-mris_compute_lgi-lh.

     pial/lh.pial.filled.mgz');

Sarina IwabuchiDivision of Psychiatry and Applied Psychology

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This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please send it back to me, and immediately delete it.   Please do not use, copy or disclose the information contained in this message or in any attachment.  Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham.

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