Tue Aug 27 11:08:47 EDT 2013
/autofs/cluster/ichresearch/Petechial/MEG/CAA_022_struc
/usr/local/freesurfer/stable5_3_0/bin/recon-all
-all -subjid /cluster/ichresearch/Petechial/MEG/CAA_022_struc
subjid CAA_022_struc
setenv SUBJECTS_DIR /autofs/cluster/ichresearch/Petechial/MEG
FREESURFER_HOME /usr/local/freesurfer/stable5_3_0
Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/stable5_3_0
build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-v5.3.0-20130514
Linux eesmith 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
cputime      unlimited
filesize     unlimited
datasize     unlimited
stacksize    10240 kbytes
coredumpsize 0 kbytes
memoryuse    unlimited
vmemoryuse   unlimited
descriptors  4096 
memorylocked 64 kbytes
maxproc      4096 

             total       used       free     shared    buffers     cached
Mem:       8059944    7591652     468292          0    1453972     236756
-/+ buffers/cache:    5900924    2159020
Swap:            0          0          0

########################################
program versions used
$Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $
$Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $
mri_convert -all-info 
ProgramName: mri_convert  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:48-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
FLIRT version 5.5
$Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $
mri_convert --version 
stable5
ProgramName: tkregister2_cmdl  ProgramArguments: --all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:49-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
Program nu_correct, built from:
Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37
ProgramName: mri_make_uchar  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:51-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_normalize  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:51-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_watershed  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:52-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_gcut  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:53-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_segment  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:54-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_label2label  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:55-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 


 ======= NUMBER OF OPENMP THREADS = 1 ======= 
ProgramName: mri_em_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:55-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_ca_normalize  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:56-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_ca_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:57-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_ca_label  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:58-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_pretess  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:58-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_fill  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:08:59-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_tessellate  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:00-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_concatenate_lta  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:01-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_normalize_tp2  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:01-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_smooth  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:02-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_inflate  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:03-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_curvature  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:04-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_sphere  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:05-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_fix_topology  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:05-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_topo_fixer  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:06-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_ca_label  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:07-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_euler_number  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:08-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_make_surfaces  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:08-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:09-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_volmask  ProgramArguments: --all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:10-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_anatomical_stats  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:11-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mrisp_paint  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:12-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_curvature_stats  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:13-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_calc  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:13-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
$Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $

ProgramName: mri_robust_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:14-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
$Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $

ProgramName: mri_robust_template  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:15-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_and  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:16-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_or  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:17-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_fuse_segmentations  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:18-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_segstats  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/08/27-15:09:18-GMT  BuildTimeStamp: May 14 2013 15:52:47  CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $  User: pfotiad  Machine: eesmith  Platform: Linux  PlatformVersion: 2.6.32-279.22.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 
#######################################
GCADIR /usr/local/freesurfer/stable5_3_0/average
GCA RB_all_2008-03-26.gca
GCASkull RB_all_withskull_2008-03-26.gca
AvgCurvTif average.curvature.filled.buckner40.tif
GCSDIR /usr/local/freesurfer/stable5_3_0/average
GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs
#######################################
#--------------------------------------------
#@# MotionCor Tue Aug 27 11:09:19 EDT 2013
Found 2 runs
/autofs/cluster/ichresearch/Petechial/MEG/CAA_022_struc/mri/orig/001.mgz
/autofs/cluster/ichresearch/Petechial/MEG/CAA_022_struc/mri/orig/002.mgz
Checking for (invalid) multi-frame inputs...