On 19 Sep 2022, at 01:02, Raikkonen Kimi <akdaus2016@gmail.com> wrote:

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Dear FreeSurfer,

Hi, I was trying to run longitudinal analysis of the hippocampus and amygdala segmentation pipeline after running the main FreeSurfer longitudinal pipeline.

 

I ran 

segmentHA_T1_long.sh 101_MRI1.long.101_template

segmentHA_T1_long.sh 101_MRI2.long.101_template

segmentHA_T1_long.sh 101_MRI3.long.101_template   etc.

 

but I got the following error message:

List of time points:    /study/101_MRI1.long.101_template/base-tps does not exist

 

 

 

 

I think I’ve headed the wrong direction, I was wondering how to do the list of time points for a subject.

Thanks so much for your help in advance.

Best regards,

Alex

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