Do you just want to do an ROI analysis? Or do you want to do a voxel-based analysis? If ROI-based, then follow the steps on the ROI tutorial (ie, aparcstats2table and mri_glmfit with --table input).

Hi Mohamed

Doug is away this week and can give you a more details answer next week. Certainly you could use mris_anatomical_stats -l <BA label file name> to compute the volume/thickness/area for each subject then do whatever GLM analysis you want outside of FS.

cheers
Bruce


 On Fri, 3 Nov 2017, m.bahri@uliege.be wrote:

Dear All,
Does anyone have an answer to the following VBM question?

Many thanks in advance,
Regards

-----Mail original-----
De: "Mohamed Ali Bahri" <m.bahri@uliege.be>
À: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu>
Envoyé: Jeudi, Novembre 2, 2017 06:08:33 PM
Objet: [Freesurfer] VBM question

Dear Freesurfer users,

I would like to study the between groups changes of volume/cortical
thickness of one region (Perirhinal) belonging to the Brodmann areas. I
tried to do that with Qdec tool but unfortunately Qdec does not load the
Brodmann areas stat list. I am wondering if I could use the GLM
formalism with of course regressing out the ITV. Any suggestion/advice
will be very welcome.

Many thanks in advance,

Best regards,

Mohamed

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