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That worked, thank you so much!

 

Best,

Nathan

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Wang, Ruopeng <RWANG4@mgh.harvard.edu>
Date: Monday, 27 February 2023 at 15:38
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Freeview displaying images in the wrong orientation

Freeview by default will display the image in its original pixel space, without re-sampling. You can try the -r flag to enable the resampling like this:

 

freeview foo.mgz -r -cubic

 

Ruopeng



On Feb 27, 2023, at 7:04 AM, Nathan Kindred (PGR) <N.Kindred1@newcastle.ac.uk> wrote:

 

        External Email - Use Caution        

 

Hi,

 

Apologies for the delay, please find attached a screenshot of an example image in orient_mri and the same image in freeview.

 

Best,

Nathan

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Wang, Ruopeng <RWANG4@MGH.HARVARD.EDU>
Date: Wednesday, 22 February 2023 at 14:24
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Freeview displaying images in the wrong orientation

⚠ External sender. Take care when opening links or attachments. Do not provide your login details.

Can you send us a screenshot or even better, a sample image file?

Ruopeng

> On Feb 22, 2023, at 7:34 AM, Nathan Kindred (PGR) <N.Kindred1@newcastle.ac.uk> wrote:
>
>        External Email - Use Caution
>
> Hi,
>
> When I am displaying certain images in freeview the orientation does not match what is displayed in both orient_mri and SPM. The coronal and horizontal views seems to be okay but the midsagittal view is often wrong with the front of the brain tilted up. How do I get freeview to display the images in the correct orientation?
>
> Thanks,
> Nathan
>
>
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