tis 28 feb 2017 10:36:43 CET /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4 /usr/local/freesurfer-6.0.0/bin/recon-all -i 0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm -subjid 4450a7a0-27e9-42bc-99ab-1c15519ad9a4 -all -mprage -qcache -hippocampal-subfields-T1 -brainstem-structures -cw256 subjid 4450a7a0-27e9-42bc-99ab-1c15519ad9a4 setenv SUBJECTS_DIR /home/gustav/Desktop FREESURFER_HOME /usr/local/freesurfer-6.0.0 Actual FREESURFER_HOME /usr/local/freesurfer-6.0.0 build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Linux siv 4.4.0-62-generic #83-Ubuntu SMP Wed Jan 18 14:10:15 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 257137 maxlocks unlimited maxsignal 257137 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 65931128 5720664 26644568 362940 33565896 59172852 Swap: 15625212 1384776 14240436 ######################################## program versions used $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $ $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $ mri_convert.bin -all-info ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:43-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $ mri_convert.bin --version stable6 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:43-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:43-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/02/28-09:36:43-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:43-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:43-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/02/28-09:36:43-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/02/28-09:36:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: gustav Machine: siv Platform: Linux PlatformVersion: 4.4.0-62-generic CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /usr/local/freesurfer-6.0.0/average GCA RB_all_2016-05-10.vc700.gca GCASkull RB_all_withskull_2016-05-10.vc700.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/freesurfer-6.0.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### -cw256 option is now persistent (remove with -clean-cw256) /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4 mri_convert /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/orig/001.mgz mri_convert.bin /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/orig/001.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm... Starting DICOMRead2() dcmfile = /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm dcmdir = /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm break DICOMRead.c:5228 Ref Series No = 301 Found 186 files, checking for dicoms ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164321618_10_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164322599_100_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164323551_101_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164325253_102_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164326225_103_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164327176_104_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164328137_105_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164329109_106_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164330791_107_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164331733_108_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164332704_109_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164333665_11_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164334617_110_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164335588_111_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164336580_112_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164338272_113_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164339243_114_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164340225_115_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164341116_116_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164342088_117_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164343059_118_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164344771_119_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164345753_12_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164346704_120_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164347605_121_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164348597_122_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164349558_123_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164351271_124_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164352252_125_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164353234_126_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164354175_127_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164355106_128_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164356088_129_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164357850_13_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164358792_130_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164359753_131_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164400664_132_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164401616_133_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164402557_134_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164424949_135_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164425941_136_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164426882_137_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164427783_138_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164428735_139_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164429676_14_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164430617_140_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164432300_141_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164433201_142_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164434102_143_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164435024_144_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164435935_145_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164436896_146_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164438569_147_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164439500_148_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164440411_149_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164441363_15_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164442314_150_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164443245_151_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164445038_152_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164445969_153_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164446861_154_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164447782_155_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164448723_156_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164449635_157_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164451307_158_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164452278_159_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164453180_16_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164454131_160_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164455072_161_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164456034_162_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164456985_163_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164458638_164_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164459549_165_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164500470_166_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164501402_167_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164502303_168_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164503965_169_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164504897_17_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164505788_170_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164506779_171_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164507671_172_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164508622_173_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164509563_174_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164511236_175_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164512197_176_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164513148_177_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164514050_178_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164514971_179_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164515922_18_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164517575_180_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164518516_181_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164519468_182_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164520359_183_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164521320_184_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164522292_19_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164523233_2_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164524895_20_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164525807_21_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164526668_22_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164527599_23_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164528551_24_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164529492_25_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164531154_26_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164532106_27_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164532997_28_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164533938_29_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164534880_3_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164538745_30_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164540378_31_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164541329_32_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164542240_33_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164543182_34_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164544153_35_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164545094_36_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164546777_37_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164547728_38_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164548619_39_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164549571_4_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164550542_40_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164551454_41_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164552395_42_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164554067_43_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164554949_44_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164555910_45_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164556861_46_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164557793_47_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164558744_48_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164600426_49_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164601328_5_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164602279_50_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164603230_51_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164607126_52_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164608087_53_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164609950_54_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164610841_55_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164611803_56_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164612794_57_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164613826_58_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164614847_59_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164616530_6_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164617481_60_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164618472_61_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164619464_62_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164620365_63_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164621296_64_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164622268_65_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164623930_66_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164624922_67_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164625893_68_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164626824_69_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164627776_7_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164628757_70_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164630420_71_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164631441_72_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164632402_73_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164633324_74_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164634305_75_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164635277_76_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164637069_77_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164638031_78_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164639002_79_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164639923_8_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164640895_80_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164641866_81_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164643538_82_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164644500_83_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164645481_84_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164646362_85_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164647344_86_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164648305_87_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164649287_88_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164650999_89_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164651941_9_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164652822_90_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164653793_91_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164654775_92_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164655736_93_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164657458_94_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164658400_95_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164659381_96_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164700353_97_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164701314_98_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164702275_99_S11617_I11073.dcm break DICOMRead.c:5228 Found 184 dicom files in series. ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164321618_10_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164322599_100_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164323551_101_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164325253_102_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164326225_103_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164327176_104_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164328137_105_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164329109_106_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164330791_107_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164331733_108_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164332704_109_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164333665_11_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164334617_110_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164335588_111_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164336580_112_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164338272_113_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164339243_114_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164340225_115_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164341116_116_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164342088_117_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164343059_118_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164344771_119_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164345753_12_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164346704_120_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164347605_121_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164348597_122_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164349558_123_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164351271_124_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164352252_125_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164353234_126_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164354175_127_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164355106_128_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164356088_129_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164357850_13_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164358792_130_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164359753_131_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164400664_132_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164401616_133_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164402557_134_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164424949_135_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164425941_136_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164426882_137_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164427783_138_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164428735_139_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164429676_14_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164430617_140_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164432300_141_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164433201_142_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164434102_143_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164435024_144_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164435935_145_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164436896_146_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164438569_147_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164439500_148_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164440411_149_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164441363_15_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164442314_150_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164443245_151_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164445038_152_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164445969_153_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164446861_154_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164447782_155_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164448723_156_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164449635_157_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164451307_158_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164452278_159_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164453180_16_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164454131_160_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164455072_161_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164456034_162_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164456985_163_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164458638_164_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164459549_165_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164500470_166_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164501402_167_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164502303_168_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164503965_169_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164504897_17_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164505788_170_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164506779_171_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164507671_172_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164508622_173_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164509563_174_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164511236_175_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164512197_176_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164513148_177_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164514050_178_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164514971_179_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164515922_18_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164517575_180_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164518516_181_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164519468_182_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164520359_183_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164521320_184_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164522292_19_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164523233_2_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164524895_20_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164525807_21_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164526668_22_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164527599_23_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164528551_24_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164529492_25_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164531154_26_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164532106_27_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164532997_28_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164533938_29_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164534880_3_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164538745_30_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164540378_31_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164541329_32_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164542240_33_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164543182_34_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164544153_35_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164545094_36_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164546777_37_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164547728_38_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164548619_39_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164549571_4_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164550542_40_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164551454_41_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164552395_42_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164554067_43_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164554949_44_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164555910_45_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164556861_46_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164557793_47_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164558744_48_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164600426_49_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164601328_5_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164602279_50_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164603230_51_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164607126_52_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164608087_53_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164609950_54_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164610841_55_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164611803_56_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164612794_57_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164613826_58_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164614847_59_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164616530_6_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164617481_60_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164618472_61_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164619464_62_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164620365_63_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164621296_64_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164622268_65_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164623930_66_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164624922_67_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164625893_68_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164626824_69_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164627776_7_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164628757_70_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164630420_71_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164631441_72_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164632402_73_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164633324_74_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164634305_75_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164635277_76_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164637069_77_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164638031_78_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164639002_79_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164639923_8_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164640895_80_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164641866_81_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164643538_82_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164644500_83_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164645481_84_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164646362_85_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164647344_86_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164648305_87_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164649287_88_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164650999_89_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164651941_9_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164652822_90_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164653793_91_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164654775_92_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164655736_93_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164657458_94_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164658400_95_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164659381_96_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164700353_97_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164701314_98_S11617_I11073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 DICOM File: /home/gustav/Desktop/0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164702275_99_S11617_I11073.dcm break DICOMRead.c:5228 First Sorting Computing Slice Direction Vs: -1.2 0 0 Vs: -1 0 0 Second Sorting IsDWI = 0, IsPhilipsDWI = 0 Counting frames nframes = 1 nslices = 184 ndcmfiles = 184 PE Dir = ROW (dicom read) Loading pixel data TR=8.62, TE=4.00, TI=0.00, flip angle=8.00 i_ras = (-0, -1, 0) j_ras = (-0, -0, -1) k_ras = (1, -0, 0) writing to /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor tis 28 feb 2017 10:36:48 CET Found 1 runs /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue. cp /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/orig/001.mgz /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/rawavg.mgz /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4 mri_convert /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/rawavg.mgz /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/orig.mgz --conform --cw256 mri_convert.bin /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/rawavg.mgz /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/orig.mgz --conform --cw256 $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/rawavg.mgz... TR=8.62, TE=4.00, TI=0.00, flip angle=8.00 i_ras = (-0, -1, 0) j_ras = (-0, -0, -1) k_ras = (1, -0, 0) changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/orig.mgz... mri_add_xform_to_header -c /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/transforms/talairach.xfm /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/orig.mgz /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/orig.mgz INFO: extension is mgz #-------------------------------------------- #@# Talairach tis 28 feb 2017 10:37:00 CET /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri /usr/local/freesurfer-6.0.0/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 nIters 1 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux siv 4.4.0-62-generic #83-Ubuntu SMP Wed Jan 18 14:10:15 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux tis 28 feb 2017 10:37:00 CET Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is ./tmp.mri_nu_correct.mni.7560 /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.7560/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.7560/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig.mgz... TR=8.62, TE=4.00, TI=0.00, flip angle=8.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.7560/nu0.mnc... -------------------------------------------------------- Iteration 1 tis 28 feb 2017 10:37:02 CET nu_correct -clobber ./tmp.mri_nu_correct.mni.7560/nu0.mnc ./tmp.mri_nu_correct.mni.7560/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.7560/0/ -iterations 1000 -distance 50 [gustav@siv:/home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/] [2017-02-28 10:37:02] running: /usr/local/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.7560/0/ ./tmp.mri_nu_correct.mni.7560/nu0.mnc ./tmp.mri_nu_correct.mni.7560/nu1.imp Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done 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Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Number of iterations: 58 CV of field change: 0.000982966 mri_convert ./tmp.mri_nu_correct.mni.7560/nu1.mnc orig_nu.mgz --like orig.mgz --conform mri_convert.bin ./tmp.mri_nu_correct.mni.7560/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.7560/nu1.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to orig_nu.mgz... tis 28 feb 2017 10:38:24 CET mri_nu_correct.mni done talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... Started at tis 28 feb 2017 10:38:24 CET Ended at tis 28 feb 2017 10:39:00 CET talairach_avi done cp transforms/talairach.auto.xfm transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection tis 28 feb 2017 10:39:02 CET /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.4938, pval=0.1531 >= threshold=0.0050) awk -f /usr/local/freesurfer-6.0.0/bin/extract_talairach_avi_QA.awk /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/transforms/talairach_avi.log tal_QC_AZS /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/transforms/talairach_avi.log TalAviQA: 0.97648 z-score: 0 #-------------------------------------------- #@# Nu Intensity Correction tis 28 feb 2017 10:39:02 CET mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri /usr/local/freesurfer-6.0.0/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux siv 4.4.0-62-generic #83-Ubuntu SMP Wed Jan 18 14:10:15 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux tis 28 feb 2017 10:39:02 CET Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is ./tmp.mri_nu_correct.mni.8586 /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.8586/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.8586/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig.mgz... TR=8.62, TE=4.00, TI=0.00, flip angle=8.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.8586/nu0.mnc... -------------------------------------------------------- Iteration 1 tis 28 feb 2017 10:39:04 CET nu_correct -clobber ./tmp.mri_nu_correct.mni.8586/nu0.mnc ./tmp.mri_nu_correct.mni.8586/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.8586/0/ [gustav@siv:/home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/] [2017-02-28 10:39:04] running: /usr/local/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.8586/0/ ./tmp.mri_nu_correct.mni.8586/nu0.mnc ./tmp.mri_nu_correct.mni.8586/nu1.imp Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Number of iterations: 50 CV of field change: 0.00116599 -------------------------------------------------------- Iteration 2 tis 28 feb 2017 10:40:01 CET nu_correct -clobber ./tmp.mri_nu_correct.mni.8586/nu1.mnc ./tmp.mri_nu_correct.mni.8586/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.8586/1/ [gustav@siv:/home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/] [2017-02-28 10:40:01] running: /usr/local/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.8586/1/ ./tmp.mri_nu_correct.mni.8586/nu1.mnc ./tmp.mri_nu_correct.mni.8586/nu2.imp Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Number of iterations: 45 CV of field change: 0.000975592 mri_binarize --i ./tmp.mri_nu_correct.mni.8586/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.8586/ones.mgz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri cmdline mri_binarize.bin --i ./tmp.mri_nu_correct.mni.8586/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.8586/ones.mgz sysname Linux hostname siv machine x86_64 user gustav input ./tmp.mri_nu_correct.mni.8586/nu2.mnc frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.8586/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777216 voxels in final mask Count: 16777216 16777216.000000 16777216 100.000000 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.8586/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.8586/sum.junk --avgwf ./tmp.mri_nu_correct.mni.8586/input.mean.dat $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.8586/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.8586/sum.junk --avgwf ./tmp.mri_nu_correct.mni.8586/input.mean.dat sysname Linux hostname siv machine x86_64 user gustav UseRobust 0 Loading ./tmp.mri_nu_correct.mni.8586/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.8586/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.8586/ones.mgz --i ./tmp.mri_nu_correct.mni.8586/nu2.mnc --sum ./tmp.mri_nu_correct.mni.8586/sum.junk --avgwf ./tmp.mri_nu_correct.mni.8586/output.mean.dat $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.8586/ones.mgz --i ./tmp.mri_nu_correct.mni.8586/nu2.mnc --sum ./tmp.mri_nu_correct.mni.8586/sum.junk --avgwf ./tmp.mri_nu_correct.mni.8586/output.mean.dat sysname Linux hostname siv machine x86_64 user gustav UseRobust 0 Loading ./tmp.mri_nu_correct.mni.8586/ones.mgz Loading ./tmp.mri_nu_correct.mni.8586/nu2.mnc Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.8586/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.8586/nu2.mnc ./tmp.mri_nu_correct.mni.8586/nu2.mnc mul 1.04708895988011464406 Saving result to './tmp.mri_nu_correct.mni.8586/nu2.mnc' (type = MINC ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.8586/nu2.mnc nu.mgz --like orig.mgz mri_convert.bin ./tmp.mri_nu_correct.mni.8586/nu2.mnc nu.mgz --like orig.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.8586/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 10 seconds. mapping ( 7, 132) to ( 3, 110) tis 28 feb 2017 10:41:36 CET mri_nu_correct.mni done mri_add_xform_to_header -c /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization tis 28 feb 2017 10:41:37 CET /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri mri_normalize -g 1 -mprage nu.mgz T1.mgz using max gradient = 1.000 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading from nu.mgz... normalizing image... talairach transform 1.03580 -0.02501 -0.00338 1.96692; 0.02909 0.96167 0.43716 -5.46670; -0.04709 -0.47814 0.99895 -1.93613; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 19 Starting OpenSpline(): npoints = 19 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 90 gm peak at 72 (72), valley at 63 (63) csf peak at 38, setting threshold to 60 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 89 gm peak at 71 (71), valley at 35 (35) csf peak at 36, setting threshold to 59 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 2 minutes and 36 seconds. #-------------------------------------------- #@# Skull Stripping tis 28 feb 2017 10:44:15 CET /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri mri_em_register -rusage /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/touch/rusage.mri_em_register.skull.dat -skull nu.mgz /usr/local/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 5 == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach_with_skull.log reading '/usr/local/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca'... average std = 22.9 using min determinant for regularization = 52.6 0 singular and 9002 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 8.7 or > 569.1 total sample mean = 77.6 (1399 zeros) ************************************************ spacing=8, using 3243 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3243, passno 0, spacing 8 resetting wm mean[0]: 100 --> 108 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=7.0 skull bounding box = (53, 23, 11) --> (215, 255, 241) using (107, 100, 126) as brain centroid... mean wm in atlas = 108, using box (87,71,98) --> (126, 128,154) to find MRI wm before smoothing, mri peak at 107 robust fit to distribution - 107 +- 7.3 after smoothing, mri peak at 107, scaling input intensities by 1.009 scaling channel 0 by 1.00935 initial log_p = -4.502 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.454213 @ (-9.091, 9.091, 9.091) max log p = -4.396178 @ (4.545, 4.545, -13.636) max log p = -4.340852 @ (-2.273, -6.818, 6.818) max log p = -4.315196 @ (1.136, 5.682, -1.136) max log p = -4.297982 @ (0.568, -0.568, 1.705) max log p = -4.297982 @ (0.000, 0.000, 0.000) Found translation: (-5.1, 11.9, 2.8): log p = -4.298 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.125, old_max_log_p =-4.298 (thresh=-4.3) 1.07500 0.00000 0.00000 -14.86281; 0.00000 1.00369 0.39316 -31.04263; 0.00000 -0.42276 0.97372 60.74287; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.043, old_max_log_p =-4.125 (thresh=-4.1) 1.07500 0.00000 0.00000 -14.86281; 0.00000 1.07897 0.42264 -36.53391; 0.00000 -0.42276 0.97372 60.74287; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 2 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.043, old_max_log_p =-4.043 (thresh=-4.0) 1.07500 0.00000 0.00000 -14.86281; 0.00000 1.07897 0.42264 -36.53391; 0.00000 -0.42276 0.97372 60.74287; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.950, old_max_log_p =-4.043 (thresh=-4.0) 1.03430 0.03092 0.01329 -16.69714; -0.03982 1.15258 0.41495 -39.57077; -0.00243 -0.37708 0.96885 52.07623; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.950, old_max_log_p =-3.950 (thresh=-3.9) 1.03430 0.03092 0.01329 -16.69714; -0.03982 1.15258 0.41495 -39.57077; -0.00243 -0.37708 0.96885 52.07623; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.929, old_max_log_p =-3.950 (thresh=-3.9) 1.03309 0.03088 0.01327 -15.59224; -0.03986 1.15393 0.41543 -39.78325; -0.00242 -0.37576 0.96545 52.28296; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.923, old_max_log_p =-3.929 (thresh=-3.9) 1.03309 0.03088 0.01327 -15.59224; -0.03977 1.15123 0.41446 -39.35679; -0.00242 -0.37532 0.96432 52.35184; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.923, old_max_log_p =-3.923 (thresh=-3.9) 1.03309 0.03088 0.01327 -15.59224; -0.03977 1.15123 0.41446 -39.35679; -0.00242 -0.37532 0.96432 52.35184; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3243 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.03309 0.03088 0.01327 -15.59224; -0.03977 1.15123 0.41446 -39.35679; -0.00242 -0.37532 0.96432 52.35184; 0.00000 0.00000 0.00000 1.00000; nsamples 3243 Quasinewton: input matrix 1.03309 0.03088 0.01327 -15.59224; -0.03977 1.15123 0.41446 -39.35679; -0.00242 -0.37532 0.96432 52.35184; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.03309 0.03088 0.01327 -15.59224; -0.03977 1.15123 0.41446 -39.35679; -0.00242 -0.37532 0.96432 52.35184; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.923 (old=-4.502) transform before final EM align: 1.03309 0.03088 0.01327 -15.59224; -0.03977 1.15123 0.41446 -39.35679; -0.00242 -0.37532 0.96432 52.35184; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 364799 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.03309 0.03088 0.01327 -15.59224; -0.03977 1.15123 0.41446 -39.35679; -0.00242 -0.37532 0.96432 52.35184; 0.00000 0.00000 0.00000 1.00000; nsamples 364799 Quasinewton: input matrix 1.03309 0.03088 0.01327 -15.59224; -0.03977 1.15123 0.41446 -39.35679; -0.00242 -0.37532 0.96432 52.35184; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 012: -log(p) = 4.3 tol 0.000000 final transform: 1.03309 0.03088 0.01327 -15.59224; -0.03977 1.15123 0.41446 -39.35679; -0.00242 -0.37532 0.96432 52.35184; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach_with_skull.lta... mri_em_register utimesec 1949.056000 mri_em_register stimesec 2.648000 mri_em_register ru_maxrss 616128 mri_em_register ru_ixrss 0 mri_em_register ru_idrss 0 mri_em_register ru_isrss 0 mri_em_register ru_minflt 1281090 mri_em_register ru_majflt 0 mri_em_register ru_nswap 0 mri_em_register ru_inblock 0 mri_em_register ru_oublock 24 mri_em_register ru_msgsnd 0 mri_em_register ru_msgrcv 0 mri_em_register ru_nsignals 0 mri_em_register ru_nvcsw 0 mri_em_register ru_nivcsw 713 registration took 32 minutes and 32 seconds. mri_watershed -rusage /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/touch/rusage.mri_watershed.dat -T1 -brain_atlas /usr/local/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=134 y=110 z=102 r=92 first estimation of the main basin volume: 3359568 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=156, y=91, z=73, Imax=255 CSF=15, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=460575638 voxels, voxel volume =1.000 = 460575638 mmm3 = 460575.648 cm3 done. PostAnalyze...Basin Prior 12 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=132,y=110, z=95, r=9660 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=16, CSF_MAX=48 , nb = 43915 RIGHT_CER CSF_MIN=0, CSF_intensity=5, CSF_MAX=25 , nb = -1029402954 LEFT_CER CSF_MIN=0, CSF_intensity=4, CSF_MAX=18 , nb = -1050836919 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=16, CSF_MAX=47 , nb = -1073419940 LEFT_BRAIN CSF_MIN=0, CSF_intensity=15, CSF_MAX=49 , nb = 1075412302 OTHER CSF_MIN=0, CSF_intensity=14, CSF_MAX=38 , nb = 1082948440 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 48, 42, 33, 81 after analyzing : 35, 42, 42, 51 RIGHT_CER before analyzing : 25, 27, 32, 80 after analyzing : 25, 30, 32, 42 LEFT_CER before analyzing : 18, 21, 32, 82 after analyzing : 18, 28, 32, 41 RIGHT_BRAIN before analyzing : 47, 41, 33, 81 after analyzing : 34, 41, 41, 51 LEFT_BRAIN before analyzing : 49, 42, 33, 85 after analyzing : 35, 42, 42, 52 OTHER before analyzing : 38, 39, 41, 83 after analyzing : 38, 40, 41, 50 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...71 iterations *********************VALIDATION********************* curvature mean = -0.013, std = 0.013 curvature mean = 67.741, std = 7.805 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 6.34, sigma = 12.34 after rotation: sse = 6.34, sigma = 12.34 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 8.94, its var is 15.84 before Erosion-Dilatation 7.78% of inacurate vertices after Erosion-Dilatation 14.10% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...36 iterations mri_strip_skull: done peeling brain Brain Size = 1564852 voxels, voxel volume = 1.000 mm3 = 1564852 mmm3 = 1564.852 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 25.520000 mri_watershed stimesec 0.520000 mri_watershed ru_maxrss 878512 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 549095 mri_watershed ru_majflt 2 mri_watershed ru_nswap 0 mri_watershed ru_inblock 240 mri_watershed ru_oublock 2680 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 2 mri_watershed ru_nivcsw 22 mri_watershed done cp brainmask.auto.mgz brainmask.mgz #------------------------------------- #@# EM Registration tis 28 feb 2017 11:17:13 CET /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri mri_em_register -rusage /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/touch/rusage.mri_em_register.dat -uns 3 -mask brainmask.mgz nu.mgz /usr/local/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/usr/local/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'... average std = 7.3 using min determinant for regularization = 5.3 0 singular and 841 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 6.3 or > 503.7 total sample mean = 78.8 (1011 zeros) ************************************************ spacing=8, using 2830 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2830, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=16.0 skull bounding box = (62, 41, 30) --> (199, 184, 175) using (108, 89, 103) as brain centroid... mean wm in atlas = 107, using box (91,71,85) --> (124, 106,120) to find MRI wm before smoothing, mri peak at 105 robust fit to distribution - 104 +- 6.7 after smoothing, mri peak at 104, scaling input intensities by 1.029 scaling channel 0 by 1.02885 initial log_p = -4.309 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.097973 @ (-9.091, 9.091, 9.091) max log p = -3.981594 @ (4.545, 4.545, -4.545) max log p = -3.978723 @ (-2.273, 2.273, 2.273) max log p = -3.957159 @ (1.136, -1.136, -3.409) max log p = -3.936845 @ (-0.568, -0.568, -0.568) max log p = -3.936845 @ (0.000, 0.000, 0.000) Found translation: (-6.3, 14.2, 2.8): log p = -3.937 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.654, old_max_log_p =-3.937 (thresh=-3.9) 1.00000 0.00000 0.00000 -6.25000; 0.00000 0.93098 0.53750 -33.69152; 0.00000 -0.53750 0.93098 75.03130; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.654, old_max_log_p =-3.654 (thresh=-3.7) 1.00000 0.00000 0.00000 -6.25000; 0.00000 0.93098 0.53750 -33.69152; 0.00000 -0.53750 0.93098 75.03130; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.621, old_max_log_p =-3.654 (thresh=-3.7) 1.01805 0.00000 0.00000 -8.65000; 0.00000 0.99570 0.45399 -30.88979; 0.00000 -0.42466 0.94363 61.51051; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.621, old_max_log_p =-3.621 (thresh=-3.6) 1.01805 0.00000 0.00000 -8.65000; 0.00000 0.99570 0.45399 -30.88979; 0.00000 -0.42466 0.94363 61.51051; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.578, old_max_log_p =-3.621 (thresh=-3.6) 1.02149 0.01646 0.00720 -11.09311; -0.01660 0.99549 0.44466 -27.77358; 0.00014 -0.41743 0.94955 60.15351; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.578, old_max_log_p =-3.578 (thresh=-3.6) 1.02149 0.01646 0.00720 -11.09311; -0.01660 0.99549 0.44466 -27.77358; 0.00014 -0.41743 0.94955 60.15351; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2830 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.02149 0.01646 0.00720 -11.09311; -0.01660 0.99549 0.44466 -27.77358; 0.00014 -0.41743 0.94955 60.15351; 0.00000 0.00000 0.00000 1.00000; nsamples 2830 Quasinewton: input matrix 1.02149 0.01646 0.00720 -11.09311; -0.01660 0.99549 0.44466 -27.77358; 0.00014 -0.41743 0.94955 60.15351; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 008: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.02149 0.01646 0.00720 -11.09311; -0.01660 0.99549 0.44466 -27.77358; 0.00014 -0.41743 0.94955 60.15351; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.578 (old=-4.309) transform before final EM align: 1.02149 0.01646 0.00720 -11.09311; -0.01660 0.99549 0.44466 -27.77358; 0.00014 -0.41743 0.94955 60.15351; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315557 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.02149 0.01646 0.00720 -11.09311; -0.01660 0.99549 0.44466 -27.77358; 0.00014 -0.41743 0.94955 60.15351; 0.00000 0.00000 0.00000 1.00000; nsamples 315557 Quasinewton: input matrix 1.02149 0.01646 0.00720 -11.09311; -0.01660 0.99549 0.44466 -27.77358; 0.00014 -0.41743 0.94955 60.15351; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 010: -log(p) = 4.0 tol 0.000000 final transform: 1.02149 0.01646 0.00720 -11.09311; -0.01660 0.99549 0.44466 -27.77358; 0.00014 -0.41743 0.94955 60.15351; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... mri_em_register utimesec 1243.252000 mri_em_register stimesec 2.152000 mri_em_register ru_maxrss 603460 mri_em_register ru_ixrss 0 mri_em_register ru_idrss 0 mri_em_register ru_isrss 0 mri_em_register ru_minflt 1028959 mri_em_register ru_majflt 0 mri_em_register ru_nswap 0 mri_em_register ru_inblock 0 mri_em_register ru_oublock 16 mri_em_register ru_msgsnd 0 mri_em_register ru_msgrcv 0 mri_em_register ru_nsignals 0 mri_em_register ru_nvcsw 0 mri_em_register ru_nivcsw 640 registration took 20 minutes and 45 seconds. #-------------------------------------- #@# CA Normalize tis 28 feb 2017 11:37:59 CET /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /usr/local/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/usr/local/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=16.0 skull bounding box = (62, 41, 30) --> (199, 184, 175) using (108, 89, 103) as brain centroid... mean wm in atlas = 107, using box (91,71,85) --> (124, 106,120) to find MRI wm before smoothing, mri peak at 105 robust fit to distribution - 104 +- 6.7 after smoothing, mri peak at 104, scaling input intensities by 1.029 scaling channel 0 by 1.02885 using 246344 sample points... INFO: compute sample coordinates transform 1.02149 0.01646 0.00720 -11.09311; -0.01660 0.99549 0.44466 -27.77358; 0.00014 -0.41743 0.94955 60.15351; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (131, 45, 25) --> (197, 163, 180) Left_Cerebral_White_Matter: limiting intensities to 101.0 --> 132.0 0 of 447 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (69, 45, 25) --> (134, 155, 179) Right_Cerebral_White_Matter: limiting intensities to 98.0 --> 132.0 0 of 385 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (133, 136, 60) --> (180, 176, 110) Left_Cerebellum_White_Matter: limiting intensities to 104.0 --> 132.0 0 of 42 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (88, 136, 56) --> (132, 174, 110) Right_Cerebellum_White_Matter: limiting intensities to 104.0 --> 132.0 3 of 29 (10.3%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (115, 118, 88) --> (149, 181, 119) Brain_Stem: limiting intensities to 93.0 --> 132.0 0 of 152 (0.0%) samples deleted using 1055 total control points for intensity normalization... bias field = 0.892 +- 0.082 0 of 1052 control points discarded finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (131, 45, 25) --> (197, 163, 180) Left_Cerebral_White_Matter: limiting intensities to 90.0 --> 132.0 1 of 779 (0.1%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (69, 45, 25) --> (134, 155, 179) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 1 of 695 (0.1%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (133, 136, 60) --> (180, 176, 110) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 4 of 132 (3.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (88, 136, 56) --> (132, 174, 110) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 5 of 124 (4.0%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (115, 118, 88) --> (149, 181, 119) Brain_Stem: limiting intensities to 88.0 --> 132.0 92 of 296 (31.1%) samples deleted using 2026 total control points for intensity normalization... bias field = 1.002 +- 0.065 5 of 1903 control points discarded finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (131, 45, 25) --> (197, 163, 180) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 848 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (69, 45, 25) --> (134, 155, 179) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 3 of 771 (0.4%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (133, 136, 60) --> (180, 176, 110) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 104 of 191 (54.5%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (88, 136, 56) --> (132, 174, 110) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 47 of 118 (39.8%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (115, 118, 88) --> (149, 181, 119) Brain_Stem: limiting intensities to 88.0 --> 132.0 169 of 295 (57.3%) samples deleted using 2223 total control points for intensity normalization... bias field = 1.013 +- 0.053 6 of 1859 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 1 minutes and 46 seconds. #-------------------------------------- #@# CA Reg tis 28 feb 2017 11:39:45 CET /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/mri mri_ca_register -rusage /home/gustav/Desktop/4450a7a0-27e9-42bc-99ab-1c15519ad9a4/touch/rusage.mri_ca_register.dat -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /usr/local/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_ca_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/usr/local/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'... label assignment complete, 0 changed (0.00%) det(m_affine) = 1.16 (predicted orig area = 6.9) label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.039 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.895, neg=0, invalid=762 0001: dt=221.952000, rms=0.811 (9.368%), neg=0, invalid=762 0002: dt=240.299177, rms=0.790 (2.595%), neg=0, invalid=762 0003: dt=232.602151, rms=0.780 (1.264%), neg=0, invalid=762 0004: dt=153.263158, rms=0.774 (0.718%), neg=0, invalid=762 0005: dt=517.888000, rms=0.764 (1.329%), neg=0, invalid=762 0006: dt=129.472000, rms=0.760 (0.593%), neg=0, invalid=762 0007: dt=1183.744000, rms=0.747 (1.600%), neg=0, invalid=762 0008: dt=129.472000, rms=0.741 (0.849%), neg=0, invalid=762 0009: dt=369.920000, rms=0.739 (0.260%), neg=0, invalid=762 0010: dt=129.472000, rms=0.737 (0.221%), neg=0, invalid=762 0011: dt=129.472000, rms=0.737 (0.099%), neg=0, invalid=762 0012: dt=129.472000, rms=0.735 (0.173%), neg=0, invalid=762 0013: dt=129.472000, rms=0.734 (0.238%), neg=0, invalid=762 0014: dt=129.472000, rms=0.732 (0.274%), neg=0, invalid=762 0015: dt=129.472000, rms=0.730 (0.286%), neg=0, invalid=762 0016: dt=129.472000, rms=0.727 (0.307%), neg=0, invalid=762 0017: dt=129.472000, rms=0.725 (0.298%), neg=0, invalid=762 0018: dt=129.472000, rms=0.723 (0.286%), neg=0, invalid=762 0019: dt=129.472000, rms=0.721 (0.283%), neg=0, invalid=762 0020: dt=129.472000, rms=0.719 (0.257%), neg=0, invalid=762 0021: dt=129.472000, rms=0.717 (0.255%), neg=0, invalid=762 0022: dt=129.472000, rms=0.716 (0.259%), neg=0, invalid=762 0023: dt=129.472000, rms=0.714 (0.234%), neg=0, invalid=762 0024: dt=129.472000, rms=0.712 (0.217%), neg=0, invalid=762 0025: dt=129.472000, rms=0.711 (0.186%), neg=0, invalid=762 0026: dt=129.472000, rms=0.710 (0.176%), neg=0, invalid=762 0027: dt=129.472000, rms=0.709 (0.157%), neg=0, invalid=762 0028: dt=129.472000, rms=0.708 (0.147%), neg=0, invalid=762 0029: dt=129.472000, rms=0.707 (0.145%), neg=0, invalid=762 0030: dt=129.472000, rms=0.706 (0.142%), neg=0, invalid=762 0031: dt=129.472000, rms=0.705 (0.146%), neg=0, invalid=762 0032: dt=129.472000, rms=0.704 (0.128%), neg=0, invalid=762 0033: dt=129.472000, rms=0.703 (0.112%), neg=0, invalid=762 0034: dt=129.472000, rms=0.702 (0.102%), neg=0, invalid=762 0035: dt=2071.552000, rms=0.701 (0.146%), neg=0, invalid=762 0036: dt=92.480000, rms=0.701 (0.047%), neg=0, invalid=762 0037: dt=92.480000, rms=0.701 (0.002%), neg=0, invalid=762 0038: dt=92.480000, rms=0.701 (-0.002%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.701, neg=0, invalid=762 0039: dt=129.472000, rms=0.700 (0.120%), neg=0, invalid=762 0040: dt=443.904000, rms=0.700 (0.068%), neg=0, invalid=762 0041: dt=443.904000, rms=0.699 (0.081%), neg=0, invalid=762 0042: dt=443.904000, rms=0.699 (-0.018%), neg=0, invalid=762 setting smoothness coefficient to 0.154 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.705, neg=0, invalid=762 0043: dt=246.009756, rms=0.693 (1.661%), neg=0, invalid=762 0044: dt=140.936170, rms=0.679 (1.966%), neg=0, invalid=762 0045: dt=68.705882, rms=0.675 (0.587%), neg=0, invalid=762 0046: dt=580.608000, rms=0.665 (1.572%), neg=0, invalid=762 0047: dt=62.208000, rms=0.657 (1.173%), neg=0, invalid=762 0048: dt=145.152000, rms=0.654 (0.460%), neg=0, invalid=762 0049: dt=62.208000, rms=0.653 (0.086%), neg=0, invalid=762 0050: dt=62.208000, rms=0.653 (0.116%), neg=0, invalid=762 0051: dt=62.208000, rms=0.651 (0.202%), neg=0, invalid=762 0052: dt=62.208000, rms=0.650 (0.271%), neg=0, invalid=762 0053: dt=62.208000, rms=0.647 (0.333%), neg=0, invalid=762 0054: dt=62.208000, rms=0.645 (0.379%), neg=0, invalid=762 0055: dt=62.208000, rms=0.642 (0.415%), neg=0, invalid=762 0056: dt=62.208000, rms=0.640 (0.400%), neg=0, invalid=762 0057: dt=62.208000, rms=0.637 (0.388%), neg=0, invalid=762 0058: dt=62.208000, rms=0.635 (0.362%), neg=0, invalid=762 0059: dt=62.208000, rms=0.633 (0.344%), neg=0, invalid=762 0060: dt=62.208000, rms=0.631 (0.332%), neg=0, invalid=762 0061: dt=62.208000, rms=0.629 (0.308%), neg=0, invalid=762 0062: dt=62.208000, rms=0.627 (0.248%), neg=0, invalid=762 0063: dt=62.208000, rms=0.626 (0.214%), neg=0, invalid=762 0064: dt=62.208000, rms=0.625 (0.189%), neg=0, invalid=762 0065: dt=62.208000, rms=0.623 (0.185%), neg=0, invalid=762 0066: dt=62.208000, rms=0.622 (0.172%), neg=0, invalid=762 0067: dt=62.208000, rms=0.622 (0.129%), neg=0, invalid=762 0068: dt=62.208000, rms=0.621 (0.111%), neg=0, invalid=762 0069: dt=62.208000, rms=0.620 (0.109%), neg=0, invalid=762 0070: dt=145.152000, rms=0.620 (0.020%), neg=0, invalid=762 0071: dt=145.152000, rms=0.620 (-0.015%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.621, neg=0, invalid=762 0072: dt=79.379845, rms=0.619 (0.260%), neg=0, invalid=762 0073: dt=124.416000, rms=0.619 (0.072%), neg=0, invalid=762 0074: dt=124.416000, rms=0.619 (-0.127%), neg=0, invalid=762 setting smoothness coefficient to 0.588 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.644, neg=0, invalid=762 0075: dt=0.000000, rms=0.644 (0.102%), neg=0, invalid=762 0076: dt=0.000000, rms=0.644 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.644, neg=0, invalid=762 0077: dt=0.000000, rms=0.644 (0.102%), neg=0, invalid=762 0078: dt=0.000000, rms=0.644 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.719, neg=0, invalid=762 0079: dt=4.997680, rms=0.698 (2.909%), neg=0, invalid=762 0080: dt=1.900000, rms=0.698 (0.065%), neg=0, invalid=762 0081: dt=1.900000, rms=0.698 (-0.068%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.698, neg=0, invalid=762 0082: dt=0.000000, rms=0.698 (0.079%), neg=0, invalid=762 0083: dt=0.000000, rms=0.698 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 5.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.774, neg=0, invalid=762 0084: dt=1.536000, rms=0.768 (0.773%), neg=0, invalid=762 0085: dt=1.792000, rms=0.764 (0.549%), neg=0, invalid=762 0086: dt=0.320000, rms=0.764 (0.017%), neg=0, invalid=762 0087: dt=0.320000, rms=0.764 (0.003%), neg=0, invalid=762 0088: dt=0.320000, rms=0.764 (-0.031%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.764, neg=0, invalid=762 0089: dt=0.448000, rms=0.764 (0.093%), neg=0, invalid=762 0090: dt=0.448000, rms=0.763 (0.012%), neg=0, invalid=762 0091: dt=0.448000, rms=0.763 (0.000%), neg=0, invalid=762 0092: dt=0.448000, rms=0.763 (-0.041%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 10.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.698, neg=0, invalid=762 0093: dt=0.957490, rms=0.674 (3.417%), neg=0, invalid=762 0094: dt=0.080000, rms=0.673 (0.165%), neg=0, invalid=762 0095: dt=0.080000, rms=0.673 (-0.066%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.673, neg=0, invalid=762 0096: dt=0.028000, rms=0.673 (0.096%), neg=0, invalid=762 0097: dt=0.005000, rms=0.673 (0.000%), neg=0, invalid=762 0098: dt=0.005000, rms=0.673 (-0.000%), neg=0, invalid=762 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.10027 (20) mri peak = 0.19531 (15) Left_Lateral_Ventricle (4): linear fit = 0.85 x + 0.0 (2665 voxels, overlap=0.512) Left_Lateral_Ventricle (4): linear fit = 0.85 x + 0.0 (2665 voxels, peak = 17), gca=16.9 gca peak = 0.15565 (16) mri peak = 0.14851 (15) Right_Lateral_Ventricle (43): linear fit = 0.96 x + 0.0 (1465 voxels, overlap=0.716) Right_Lateral_Ventricle (43): linear fit = 0.96 x + 0.0 (1465 voxels, peak = 15), gca=15.4 gca peak = 0.26829 (96) mri peak = 0.08462 (98) Right_Pallidum (52): linear fit = 1.03 x + 0.0 (880 voxels, overlap=0.743) Right_Pallidum (52): linear fit = 1.03 x + 0.0 (880 voxels, peak = 99), gca=99.4 gca peak = 0.20183 (93) mri peak = 0.10682 (96) Left_Pallidum (13): linear fit = 1.02 x + 0.0 (879 voxels, overlap=1.002) Left_Pallidum (13): linear fit = 1.02 x + 0.0 (879 voxels, peak = 95), gca=95.3 gca peak = 0.21683 (55) mri peak = 0.06288 (68) Right_Hippocampus (53): linear fit = 1.15 x + 0.0 (753 voxels, overlap=0.141) Right_Hippocampus (53): linear fit = 1.15 x + 0.0 (753 voxels, peak = 64), gca=63.5 gca peak = 0.30730 (58) mri peak = 0.07190 (70) Left_Hippocampus (17): linear fit = 1.18 x + 0.0 (839 voxels, overlap=0.098) Left_Hippocampus (17): linear fit = 1.18 x + 0.0 (839 voxels, peak = 69), gca=68.7 gca peak = 0.11430 (101) mri peak = 0.07522 (103) Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (59883 voxels, overlap=0.902) Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (59883 voxels, peak = 104), gca=103.5 gca peak = 0.12076 (102) mri peak = 0.08117 (103) Left_Cerebral_White_Matter (2): linear fit = 1.02 x + 0.0 (62864 voxels, overlap=0.878) Left_Cerebral_White_Matter (2): linear fit = 1.02 x + 0.0 (62864 voxels, peak = 105), gca=104.5 gca peak = 0.14995 (59) mri peak = 0.03380 (87) Left_Cerebral_Cortex (3): linear fit = 1.41 x + 0.0 (22195 voxels, overlap=0.000) Left_Cerebral_Cortex (3): linear fit = 1.41 x + 0.0 (22195 voxels, peak = 83), gca=83.5 gca peak = 0.15082 (58) mri peak = 0.03339 (84) Right_Cerebral_Cortex (42): linear fit = 1.40 x + 0.0 (21492 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 1.40 x + 0.0 (21492 voxels, peak = 81), gca=81.5 gca peak = 0.14161 (67) mri peak = 0.08627 (76) Right_Caudate (50): linear fit = 1.12 x + 0.0 (597 voxels, overlap=0.336) Right_Caudate (50): linear fit = 1.12 x + 0.0 (597 voxels, peak = 75), gca=74.7 gca peak = 0.15243 (71) mri peak = 0.10185 (78) Left_Caudate (11): linear fit = 1.09 x + 0.0 (769 voxels, overlap=0.462) Left_Caudate (11): linear fit = 1.09 x + 0.0 (769 voxels, peak = 77), gca=77.0 gca peak = 0.13336 (57) mri peak = 0.04374 (65) Left_Cerebellum_Cortex (8): linear fit = 1.16 x + 0.0 (25078 voxels, overlap=0.442) Left_Cerebellum_Cortex (8): linear fit = 1.16 x + 0.0 (25078 voxels, peak = 66), gca=66.4 gca peak = 0.13252 (56) mri peak = 0.03788 (62) Right_Cerebellum_Cortex (47): linear fit = 1.13 x + 0.0 (26293 voxels, overlap=0.310) Right_Cerebellum_Cortex (47): linear fit = 1.13 x + 0.0 (26293 voxels, peak = 64), gca=63.6 gca peak = 0.18181 (84) mri peak = 0.07728 (87) Left_Cerebellum_White_Matter (7): linear fit = 1.03 x + 0.0 (9576 voxels, overlap=0.843) Left_Cerebellum_White_Matter (7): linear fit = 1.03 x + 0.0 (9576 voxels, peak = 87), gca=86.9 gca peak = 0.20573 (83) mri peak = 0.09291 (88) Right_Cerebellum_White_Matter (46): linear fit = 1.05 x + 0.0 (8294 voxels, overlap=0.580) Right_Cerebellum_White_Matter (46): linear fit = 1.05 x + 0.0 (8294 voxels, peak = 88), gca=87.6 gca peak = 0.21969 (57) mri peak = 0.09677 (67) Left_Amygdala (18): linear fit = 1.15 x + 0.0 (372 voxels, overlap=0.058) Left_Amygdala (18): linear fit = 1.15 x + 0.0 (372 voxels, peak = 66), gca=65.8 gca peak = 0.39313 (56) mri peak = 0.10590 (70) Right_Amygdala (54): linear fit = 1.23 x + 0.0 (598 voxels, overlap=0.014) Right_Amygdala (54): linear fit = 1.23 x + 0.0 (598 voxels, peak = 69), gca=68.6 gca peak = 0.14181 (85) mri peak = 0.08039 (90) Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (5390 voxels, overlap=0.874) Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (5390 voxels, peak = 87), gca=87.1 gca peak = 0.11978 (83) mri peak = 0.07466 (90) Right_Thalamus_Proper (49): linear fit = 1.08 x + 0.0 (4033 voxels, overlap=0.722) Right_Thalamus_Proper (49): linear fit = 1.08 x + 0.0 (4033 voxels, peak = 89), gca=89.2 gca peak = 0.13399 (79) mri peak = 0.07922 (84) Left_Putamen (12): linear fit = 1.08 x + 0.0 (2414 voxels, overlap=0.690) Left_Putamen (12): linear fit = 1.08 x + 0.0 (2414 voxels, peak = 85), gca=84.9 gca peak = 0.14159 (79) mri peak = 0.07853 (83) Right_Putamen (51): linear fit = 1.04 x + 0.0 (2504 voxels, overlap=0.846) Right_Putamen (51): linear fit = 1.04 x + 0.0 (2504 voxels, peak = 83), gca=82.6 gca peak = 0.10025 (80) mri peak = 0.10352 (84) Brain_Stem (16): linear fit = 1.10 x + 0.0 (10913 voxels, overlap=0.402) Brain_Stem (16): linear fit = 1.10 x + 0.0 (10913 voxels, peak = 88), gca=87.6 gca peak = 0.13281 (86) mri peak = 0.10519 (95) Right_VentralDC (60): linear fit = 1.08 x + 0.0 (1093 voxels, overlap=0.630) Right_VentralDC (60): linear fit = 1.08 x + 0.0 (1093 voxels, peak = 92), gca=92.5 gca peak = 0.12801 (89) mri peak = 0.08815 (87) Left_VentralDC (28): linear fit = 1.07 x + 0.0 (1268 voxels, overlap=0.713) Left_VentralDC (28): linear fit = 1.07 x + 0.0 (1268 voxels, peak = 95), gca=94.8 gca peak = 0.20494 (23) mri peak = 0.16674 (19) Third_Ventricle (14): linear fit = 0.74 x + 0.0 (57 voxels, overlap=0.553) Third_Ventricle (14): linear fit = 0.74 x + 0.0 (57 voxels, peak = 17), gca=16.9 gca peak = 0.15061 (21) mri peak = 0.21649 (16) Fourth_Ventricle (15): linear fit = 0.81 x + 0.0 (437 voxels, overlap=0.533) Fourth_Ventricle (15): linear fit = 0.81 x + 0.0 (437 voxels, peak = 17), gca=17.1 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.18056 (32) gca peak Left_Thalamus = 0.64095 (94) gca peak CSF = 0.20999 (34) gca peak Left_Accumbens_area = 0.39030 (62) gca peak Left_undetermined = 0.95280 (25) gca peak Left_vessel = 0.67734 (53) gca peak Left_choroid_plexus = 0.09433 (44) gca peak Right_Inf_Lat_Vent = 0.23544 (26) gca peak Right_Accumbens_area = 0.30312 (64) gca peak Right_vessel = 0.46315 (51) gca peak Right_choroid_plexus = 0.14086 (44) gca peak Fifth_Ventricle = 0.51669 (36) gca peak WM_hypointensities = 0.09722 (76) gca peak non_WM_hypointensities = 0.11899 (47) gca peak Optic_Chiasm = 0.39033 (72) label assignment complete, 0 changed (0.00%) not using caudate to estimate GM means estimating mean gm scale to be 1.26 x + 0.0 estimating mean wm scale to be 1.02 x + 0.0 estimating mean csf scale to be 0.84 x + 0.0 saving intensity scales to talairach.label_intensities.txt **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.754, neg=0, invalid=762 0099: dt=85.398573, rms=0.738 (2.121%), neg=0, invalid=762 0100: dt=73.984000, rms=0.737 (0.164%), neg=0, invalid=762 0101: dt=92.480000, rms=0.736 (0.112%), neg=0, invalid=762 0102: dt=221.952000, rms=0.735 (0.225%), neg=0, invalid=762 0103: dt=517.888000, rms=0.729 (0.825%), neg=0, invalid=762 0104: dt=0.000000, rms=0.729 (0.003%), neg=0, invalid=762 0105: dt=0.850000, rms=0.729 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.729, neg=0, invalid=762 0106: dt=295.936000, rms=0.723 (0.840%), neg=0, invalid=762 0107: dt=129.472000, rms=0.721 (0.226%), neg=0, invalid=762 0108: dt=295.936000, rms=0.721 (0.079%), neg=0, invalid=762 0109: dt=295.936000, rms=0.719 (0.251%), neg=0, invalid=762 0110: dt=73.984000, rms=0.719 (0.050%), neg=0, invalid=762 0111: dt=73.984000, rms=0.718 (0.029%), neg=0, invalid=762 0112: dt=73.984000, rms=0.718 (0.038%), neg=0, invalid=762 0113: dt=73.984000, rms=0.718 (0.072%), neg=0, invalid=762 0114: dt=73.984000, rms=0.717 (0.113%), neg=0, invalid=762 0115: dt=73.984000, rms=0.716 (0.132%), neg=0, invalid=762 0116: dt=73.984000, rms=0.715 (0.135%), neg=0, invalid=762 0117: dt=73.984000, rms=0.714 (0.127%), neg=0, invalid=762 0118: dt=73.984000, rms=0.713 (0.124%), neg=0, invalid=762 0119: dt=73.984000, rms=0.712 (0.119%), neg=0, invalid=762 0120: dt=73.984000, rms=0.711 (0.124%), neg=0, invalid=762 0121: dt=73.984000, rms=0.710 (0.133%), neg=0, invalid=762 0122: dt=73.984000, rms=0.709 (0.135%), neg=0, invalid=762 0123: dt=73.984000, rms=0.708 (0.131%), neg=0, invalid=762 0124: dt=73.984000, rms=0.708 (0.122%), neg=0, invalid=762 0125: dt=73.984000, rms=0.707 (0.113%), neg=0, invalid=762 0126: dt=73.984000, rms=0.706 (0.108%), neg=0, invalid=762 0127: dt=73.984000, rms=0.705 (0.112%), neg=0, invalid=762 0128: dt=73.984000, rms=0.704 (0.115%), neg=0, invalid=762 0129: dt=73.984000, rms=0.704 (0.114%), neg=0, invalid=762 0130: dt=73.984000, rms=0.703 (0.110%), neg=0, invalid=762 0131: dt=73.984000, rms=0.702 (0.105%), neg=0, invalid=762 0132: dt=73.984000, rms=0.701 (0.099%), neg=0, invalid=762 0133: dt=73.984000, rms=0.701 (0.096%), neg=0, invalid=762 0134: dt=73.984000, rms=0.700 (0.095%), neg=0, invalid=762 0135: dt=73.984000, rms=0.699 (0.096%), neg=0, invalid=762 0136: dt=73.984000, rms=0.699 (0.094%), neg=0, invalid=762 0137: dt=73.984000, rms=0.698 (0.089%), neg=0, invalid=762 0138: dt=73.984000, rms=0.698 (0.082%), neg=0, invalid=762 0139: dt=73.984000, rms=0.697 (0.076%), neg=0, invalid=762 0140: dt=73.984000, rms=0.696 (0.075%), neg=0, invalid=762 0141: dt=73.984000, rms=0.696 (0.076%), neg=0, invalid=762 0142: dt=73.984000, rms=0.695 (0.077%), neg=0, invalid=762 0143: dt=73.984000, rms=0.695 (0.077%), neg=0, invalid=762 0144: dt=73.984000, rms=0.694 (0.072%), neg=0, invalid=762 0145: dt=73.984000, rms=0.694 (0.069%), neg=0, invalid=762 0146: dt=73.984000, rms=0.693 (0.067%), neg=0, invalid=762 0147: dt=73.984000, rms=0.693 (0.065%), neg=0, invalid=762 0148: dt=73.984000, rms=0.693 (0.064%), neg=0, invalid=762 0149: dt=73.984000, rms=0.692 (0.062%), neg=0, invalid=762 0150: dt=73.984000, rms=0.692 (0.061%), neg=0, invalid=762 0151: dt=73.984000, rms=0.691 (0.059%), neg=0, invalid=762 0152: dt=73.984000, rms=0.691 (0.058%), neg=0, invalid=762 0153: dt=73.984000, rms=0.690 (0.057%), neg=0, invalid=762 0154: dt=73.984000, rms=0.690 (0.055%), neg=0, invalid=762 0155: dt=73.984000, rms=0.690 (0.053%), neg=0, invalid=762 0156: dt=73.984000, rms=0.689 (0.050%), neg=0, invalid=762 0157: dt=73.984000, rms=0.689 (0.048%), neg=0, invalid=762 0158: dt=73.984000, rms=0.689 (0.047%), neg=0, invalid=762 0159: dt=73.984000, rms=0.688 (0.047%), neg=0, invalid=762 0160: dt=73.984000, rms=0.688 (0.048%), neg=0, invalid=762 0161: dt=73.984000, rms=0.688 (0.048%), neg=0, invalid=762 0162: dt=73.984000, rms=0.687 (0.048%), neg=0, invalid=762 0163: dt=73.984000, rms=0.687 (0.046%), neg=0, invalid=762 0164: dt=73.984000, rms=0.687 (0.043%), neg=0, invalid=762 0165: dt=73.984000, rms=0.687 (0.040%), neg=0, invalid=762 0166: dt=73.984000, rms=0.686 (0.039%), neg=0, invalid=762 0167: dt=73.984000, rms=0.686 (0.038%), neg=0, invalid=762 0168: dt=73.984000, rms=0.686 (0.037%), neg=0, invalid=762 0169: dt=73.984000, rms=0.685 (0.037%), neg=0, invalid=762 0170: dt=73.984000, rms=0.685 (0.037%), neg=0, invalid=762 0171: dt=73.984000, rms=0.685 (0.037%), neg=0, invalid=762 0172: dt=73.984000, rms=0.685 (0.036%), neg=0, invalid=762 0173: dt=73.984000, rms=0.684 (0.036%), neg=0, invalid=762 0174: dt=73.984000, rms=0.684 (0.034%), neg=0, invalid=762 0175: dt=73.984000, rms=0.684 (0.034%), neg=0, invalid=762 0176: dt=73.984000, rms=0.684 (0.034%), neg=0, invalid=762 0177: dt=73.984000, rms=0.684 (0.033%), neg=0, invalid=762 0178: dt=73.984000, rms=0.683 (0.032%), neg=0, invalid=762 0179: dt=73.984000, rms=0.683 (0.031%), neg=0, invalid=762 0180: dt=73.984000, rms=0.683 (0.030%), neg=0, invalid=762 0181: dt=73.984000, rms=0.683 (0.029%), neg=0, invalid=762 0182: dt=73.984000, rms=0.683 (0.029%), neg=0, invalid=762 0183: dt=73.984000, rms=0.682 (0.029%), neg=0, invalid=762 0184: dt=73.984000, rms=0.682 (0.029%), neg=0, invalid=762 0185: dt=73.984000, rms=0.682 (0.029%), neg=0, invalid=762 0186: dt=73.984000, rms=0.682 (0.028%), neg=0, invalid=762 0187: dt=73.984000, rms=0.682 (0.027%), neg=0, invalid=762 0188: dt=73.984000, rms=0.681 (0.026%), neg=0, invalid=762 0189: dt=73.984000, rms=0.681 (0.025%), neg=0, invalid=762 0190: dt=73.984000, rms=0.681 (0.026%), neg=0, invalid=762 0191: dt=73.984000, rms=0.681 (0.026%), neg=0, invalid=762 0192: dt=73.984000, rms=0.681 (0.026%), neg=0, invalid=762 0193: dt=73.984000, rms=0.681 (0.025%), neg=0, invalid=762 0194: dt=73.984000, rms=0.680 (0.024%), neg=0, invalid=762 0195: dt=8286.208000, rms=0.679 (0.163%), neg=0, invalid=762 0196: dt=129.472000, rms=0.679 (0.056%), neg=0, invalid=762 0197: dt=295.936000, rms=0.679 (0.044%), neg=0, invalid=762 0198: dt=295.936000, rms=0.679 (-0.049%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.680, neg=0, invalid=762 0199: dt=103.680000, rms=0.675 (0.668%), neg=0, invalid=762 0200: dt=145.152000, rms=0.665 (1.463%), neg=0, invalid=762 0201: dt=191.570470, rms=0.660 (0.766%), neg=0, invalid=762 0202: dt=103.680000, rms=0.654 (1.011%), neg=0, invalid=762 0203: dt=82.944000, rms=0.651 (0.429%), neg=0, invalid=762 0204: dt=145.152000, rms=0.647 (0.589%), neg=0, invalid=762 0205: dt=90.975207, rms=0.645 (0.365%), neg=0, invalid=762 0206: dt=145.152000, rms=0.642 (0.450%), neg=0, invalid=762 0207: dt=69.485714, rms=0.640 (0.329%), neg=0, invalid=762 0208: dt=248.832000, rms=0.636 (0.507%), neg=0, invalid=762 0209: dt=36.288000, rms=0.634 (0.325%), neg=0, invalid=762 0210: dt=145.152000, rms=0.633 (0.264%), neg=0, invalid=762 0211: dt=124.416000, rms=0.631 (0.269%), neg=0, invalid=762 0212: dt=62.693878, rms=0.630 (0.216%), neg=0, invalid=762 0213: dt=145.152000, rms=0.628 (0.276%), neg=0, invalid=762 0214: dt=145.152000, rms=0.627 (0.196%), neg=0, invalid=762 0215: dt=103.680000, rms=0.625 (0.205%), neg=0, invalid=762 0216: dt=82.944000, rms=0.624 (0.158%), neg=0, invalid=762 0217: dt=145.152000, rms=0.623 (0.182%), neg=0, invalid=762 0218: dt=36.288000, rms=0.622 (0.136%), neg=0, invalid=762 0219: dt=331.776000, rms=0.621 (0.250%), neg=0, invalid=762 0220: dt=36.288000, rms=0.620 (0.209%), neg=0, invalid=762 0221: dt=36.288000, rms=0.619 (0.094%), neg=0, invalid=762 0222: dt=9.072000, rms=0.619 (0.020%), neg=0, invalid=762 0223: dt=4.536000, rms=0.619 (0.007%), neg=0, invalid=762 0224: dt=0.283500, rms=0.619 (0.000%), neg=0, invalid=762 0225: dt=0.141750, rms=0.619 (0.000%), neg=0, invalid=762 0226: dt=0.101250, rms=0.619 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.619, neg=0, invalid=762 0227: dt=108.859813, rms=0.616 (0.485%), neg=0, invalid=762 0228: dt=124.416000, rms=0.615 (0.243%), neg=0, invalid=762 0229: dt=36.288000, rms=0.614 (0.067%), neg=0, invalid=762 0230: dt=124.416000, rms=0.614 (0.097%), neg=0, invalid=762 0231: dt=103.680000, rms=0.613 (0.164%), neg=0, invalid=762 0232: dt=36.288000, rms=0.613 (0.039%), neg=0, invalid=762 0233: dt=36.288000, rms=0.612 (0.040%), neg=0, invalid=762 0234: dt=36.288000, rms=0.612 (0.056%), neg=0, invalid=762 0235: dt=36.288000, rms=0.612 (0.092%), neg=0, invalid=762 0236: dt=36.288000, rms=0.611 (0.125%), neg=0, invalid=762 0237: dt=36.288000, rms=0.610 (0.135%), neg=0, invalid=762 0238: dt=36.288000, rms=0.609 (0.143%), neg=0, invalid=762 0239: dt=36.288000, rms=0.608 (0.148%), neg=0, invalid=762 0240: dt=36.288000, rms=0.607 (0.151%), neg=0, invalid=762 0241: dt=36.288000, rms=0.606 (0.157%), neg=0, invalid=762 0242: dt=36.288000, rms=0.605 (0.164%), neg=0, invalid=762 0243: dt=36.288000, rms=0.604 (0.169%), neg=0, invalid=762 0244: dt=36.288000, rms=0.603 (0.169%), neg=0, invalid=762 0245: dt=36.288000, rms=0.602 (0.164%), neg=0, invalid=762 0246: dt=18.144000, rms=0.602 (0.010%), neg=0, invalid=762 0247: dt=0.567000, rms=0.602 (0.001%), neg=0, invalid=762 0248: dt=0.141750, rms=0.602 (0.000%), neg=0, invalid=762 0249: dt=0.141750, rms=0.602 (0.000%), neg=0, invalid=762 0250: dt=0.035437, rms=0.602 (0.000%), neg=0, invalid=762 0251: dt=0.008859, rms=0.602 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.609, neg=0, invalid=762 0252: dt=0.002734, rms=0.608 (0.085%), neg=0, invalid=762 0253: dt=0.000000, rms=0.608 (0.000%), neg=0, invalid=762 0254: dt=0.000244, rms=0.608 (0.000%), neg=0, invalid=762 0255: dt=0.000122, rms=0.608 (0.000%), neg=0, invalid=762 0256: dt=0.000061, rms=0.608 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.609, neg=0, invalid=762 0257: dt=11.200000, rms=0.605 (0.531%), neg=0, invalid=762 0258: dt=9.600000, rms=0.603 (0.361%), neg=0, invalid=762 0259: dt=0.175000, rms=0.603 (0.008%), neg=0, invalid=762 0260: dt=0.175000, rms=0.603 (0.007%), neg=0, invalid=762 0261: dt=0.043750, rms=0.603 (0.002%), neg=0, invalid=762 0262: dt=0.010937, rms=0.603 (0.000%), neg=0, invalid=762 0263: dt=0.002734, rms=0.603 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.622, neg=0, invalid=762 0264: dt=0.000000, rms=0.622 (0.078%), neg=0, invalid=762 0265: dt=0.000000, rms=0.622 (0.000%), neg=0, invalid=762 0266: dt=0.000073, rms=0.622 (0.000%), neg=0, invalid=762 0267: dt=0.000009, rms=0.622 (0.000%), neg=0, invalid=762 0268: dt=0.000001, rms=0.622 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.622, neg=0, invalid=762 0269: dt=0.000000, rms=0.622 (0.078%), neg=0, invalid=762 0270: dt=0.000000, rms=0.622 (0.000%), neg=0, invalid=762 0271: dt=0.000001, rms=0.622 (0.000%), neg=0, invalid=762 0272: dt=0.000000, rms=0.622 (0.000%), neg=0, invalid=762 0273: dt=0.000000, rms=0.622 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.660, neg=0, invalid=762 0274: dt=1.792000, rms=0.640 (2.963%), neg=0, invalid=762 0275: dt=5.120000, rms=0.615 (3.897%), neg=0, invalid=762 0276: dt=0.000000, rms=0.615 (0.007%), neg=0, invalid=762 0277: dt=0.100000, rms=0.615 (-0.018%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.615, neg=0, invalid=762 0278: dt=0.000000, rms=0.615 (0.060%), neg=0, invalid=762 0279: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=762 0280: dt=0.100000, rms=0.615 (-0.003%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.563, neg=0, invalid=762 0281: dt=0.448000, rms=0.544 (3.370%), neg=0, invalid=762 0282: dt=0.448000, rms=0.538 (1.109%), neg=0, invalid=762 0283: dt=0.448000, rms=0.535 (0.605%), neg=0, invalid=762 0284: dt=0.112000, rms=0.534 (0.096%), neg=0, invalid=762 0285: dt=0.448000, rms=0.532 (0.367%), neg=0, invalid=762 0286: dt=0.448000, rms=0.531 (0.262%), neg=0, invalid=762 0287: dt=0.448000, rms=0.530 (0.197%), neg=0, invalid=762 0288: dt=0.384000, rms=0.529 (0.142%), neg=0, invalid=762 0289: dt=0.448000, rms=0.528 (0.131%), neg=0, invalid=762 0290: dt=0.384000, rms=0.528 (0.103%), neg=0, invalid=762 0291: dt=0.384000, rms=0.527 (0.082%), neg=0, invalid=762 0292: dt=0.384000, rms=0.527 (0.076%), neg=0, invalid=762 0293: dt=0.384000, rms=0.527 (0.058%), neg=0, invalid=762 0294: dt=0.384000, rms=0.526 (0.062%), neg=0, invalid=762 0295: dt=0.384000, rms=0.526 (0.044%), neg=0, invalid=762 0296: dt=0.384000, rms=0.526 (0.048%), neg=0, invalid=762 0297: dt=0.384000, rms=0.526 (0.079%), neg=0, invalid=762 0298: dt=0.384000, rms=0.525 (0.034%), neg=0, invalid=762 0299: dt=0.384000, rms=0.525 (0.063%), neg=0, invalid=762 0300: dt=0.384000, rms=0.525 (0.027%), neg=0, invalid=762 0301: dt=0.384000, rms=0.525 (0.018%), neg=0, invalid=762 0302: dt=0.384000, rms=0.525 (0.038%), neg=0, invalid=762 0303: dt=0.384000, rms=0.524 (0.059%), neg=0, invalid=762 0304: dt=0.384000, rms=0.524 (0.065%), neg=0, invalid=762 0305: dt=0.192000, rms=0.524 (0.006%), neg=0, invalid=762 0306: dt=0.192000, rms=0.524 (0.013%), neg=0, invalid=762 0307: dt=0.192000, rms=0.524 (0.008%), neg=0, invalid=762 0308: dt=0.112000, rms=0.524 (0.004%), neg=0, invalid=762 0309: dt=0.112000, rms=0.524 (0.005%), neg=0, invalid=762 0310: dt=0.112000, rms=0.524 (0.007%), neg=0, invalid=762 0311: dt=0.112000, rms=0.524 (0.007%), neg=0, invalid=762 0312: dt=0.112000, rms=0.524 (0.011%), neg=0, invalid=762 0313: dt=0.112000, rms=0.524 (0.011%), neg=0, invalid=762 0314: dt=0.112000, rms=0.524 (0.011%), neg=0, invalid=762 0315: dt=0.112000, rms=0.523 (0.011%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.524, neg=0, invalid=762 0316: dt=0.320000, rms=0.520 (0.698%), neg=0, invalid=762 0317: dt=0.320000, rms=0.519 (0.197%), neg=0, invalid=762 0318: dt=0.320000, rms=0.519 (0.062%), neg=0, invalid=762 0319: dt=0.320000, rms=0.519 (0.011%), neg=0, invalid=762 0320: dt=0.320000, rms=0.519 (-0.002%), neg=0, invalid=762 label assignment complete, 0 changed (0.00%) ********************* ALLOWING NEGATIVE NODES IN DEFORMATION******************************** **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.516, neg=0, invalid=762 0321: dt=8.092000, rms=0.516 (0.083%), neg=0, invalid=762 0322: dt=4.624000, rms=0.516 (-0.001%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.516, neg=0, invalid=762 0323: dt=221.952000, rms=0.516 (0.132%), neg=0, invalid=762 0324: dt=92.480000, rms=0.516 (0.018%), neg=0, invalid=762 0325: dt=92.480000, rms=0.515 (0.012%), neg=0, invalid=762 0326: dt=92.480000, rms=0.515 (0.017%), neg=0, invalid=762 0327: dt=92.480000, rms=0.515 (0.023%), neg=0, invalid=762 0328: dt=92.480000, rms=0.515 (0.024%), neg=0, invalid=762 0329: dt=92.480000, rms=0.515 (0.025%), neg=0, invalid=762 0330: dt=92.480000, rms=0.515 (0.023%), neg=0, invalid=762 0331: dt=92.480000, rms=0.515 (0.024%), neg=0, invalid=762 0332: dt=92.480000, rms=0.515 (0.018%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.515, neg=0, invalid=762 0333: dt=36.288000, rms=0.514 (0.183%), neg=0, invalid=762 0334: dt=36.288000, rms=0.514 (0.061%), neg=0, invalid=762 0335: dt=36.288000, rms=0.514 (0.061%), neg=0, invalid=762 0336: dt=36.288000, rms=0.513 (0.077%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0337: dt=36.288000, rms=0.513 (0.075%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 0338: dt=36.288000, rms=0.512 (0.089%), neg=0, invalid=762 iter 0, gcam->neg = 6 after 3 iterations, nbhd size=0, neg = 0 0339: dt=36.288000, rms=0.512 (0.121%), neg=0, invalid=762 iter 0, gcam->neg = 5 after 2 iterations, nbhd size=0, neg = 0 0340: dt=36.288000, rms=0.511 (0.157%), neg=0, invalid=762 iter 0, gcam->neg = 7 after 11 iterations, nbhd size=1, neg = 0 0341: dt=36.288000, rms=0.510 (0.146%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0342: dt=36.288000, rms=0.509 (0.158%), neg=0, invalid=762 0343: dt=36.288000, rms=0.509 (0.139%), neg=0, invalid=762 iter 0, gcam->neg = 4 after 8 iterations, nbhd size=1, neg = 0 0344: dt=36.288000, rms=0.508 (0.104%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 1 iterations, nbhd size=0, neg = 0 0345: dt=36.288000, rms=0.508 (0.085%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 0346: dt=248.832000, rms=0.507 (0.180%), neg=0, invalid=762 0347: dt=82.944000, rms=0.506 (0.068%), neg=0, invalid=762 0348: dt=82.944000, rms=0.506 (-0.004%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.507, neg=0, invalid=762 0349: dt=83.956989, rms=0.504 (0.474%), neg=0, invalid=762 0350: dt=36.288000, rms=0.504 (0.129%), neg=0, invalid=762 0351: dt=36.288000, rms=0.503 (0.068%), neg=0, invalid=762 0352: dt=36.288000, rms=0.503 (0.103%), neg=0, invalid=762 0353: dt=36.288000, rms=0.502 (0.107%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0354: dt=36.288000, rms=0.502 (0.102%), neg=0, invalid=762 0355: dt=36.288000, rms=0.501 (0.076%), neg=0, invalid=762 0356: dt=248.832000, rms=0.501 (0.095%), neg=0, invalid=762 0357: dt=31.104000, rms=0.501 (0.023%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.502, neg=0, invalid=762 iter 0, gcam->neg = 8 after 5 iterations, nbhd size=0, neg = 0 0358: dt=67.454545, rms=0.496 (1.170%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0359: dt=55.854545, rms=0.491 (0.952%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 9 iterations, nbhd size=1, neg = 0 0360: dt=29.311653, rms=0.489 (0.505%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 1 iterations, nbhd size=0, neg = 0 0361: dt=32.000000, rms=0.488 (0.262%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0362: dt=32.000000, rms=0.486 (0.311%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0363: dt=25.600000, rms=0.485 (0.147%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 2 iterations, nbhd size=0, neg = 0 0364: dt=25.600000, rms=0.484 (0.226%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 3 iterations, nbhd size=0, neg = 0 0365: dt=25.600000, rms=0.483 (0.273%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 1 iterations, nbhd size=0, neg = 0 0366: dt=25.600000, rms=0.481 (0.325%), neg=0, invalid=762 iter 0, gcam->neg = 8 after 19 iterations, nbhd size=1, neg = 0 0367: dt=25.600000, rms=0.480 (0.387%), neg=0, invalid=762 iter 0, gcam->neg = 16 after 13 iterations, nbhd size=1, neg = 0 0368: dt=25.600000, rms=0.478 (0.375%), neg=0, invalid=762 iter 0, gcam->neg = 24 after 14 iterations, nbhd size=1, neg = 0 0369: dt=25.600000, rms=0.476 (0.313%), neg=0, invalid=762 iter 0, gcam->neg = 29 after 15 iterations, nbhd size=1, neg = 0 0370: dt=25.600000, rms=0.475 (0.259%), neg=0, invalid=762 iter 0, gcam->neg = 29 after 19 iterations, nbhd size=1, neg = 0 0371: dt=25.600000, rms=0.474 (0.282%), neg=0, invalid=762 iter 0, gcam->neg = 23 after 7 iterations, nbhd size=0, neg = 0 0372: dt=25.600000, rms=0.473 (0.188%), neg=0, invalid=762 iter 0, gcam->neg = 26 after 4 iterations, nbhd size=0, neg = 0 0373: dt=25.600000, rms=0.472 (0.149%), neg=0, invalid=762 iter 0, gcam->neg = 14 after 16 iterations, nbhd size=1, neg = 0 0374: dt=25.600000, rms=0.472 (0.082%), neg=0, invalid=762 iter 0, gcam->neg = 26 after 13 iterations, nbhd size=1, neg = 0 0375: dt=25.600000, rms=0.471 (0.183%), neg=0, invalid=762 iter 0, gcam->neg = 46 after 15 iterations, nbhd size=1, neg = 0 0376: dt=25.600000, rms=0.470 (0.105%), neg=0, invalid=762 iter 0, gcam->neg = 57 after 17 iterations, nbhd size=1, neg = 0 0377: dt=25.600000, rms=0.470 (0.056%), neg=0, invalid=762