Hi Trisanna

are you  sure you aren't running out of disk space? If not, what happens
when you run the mri_convert command directly on the command line?

cheers
Bruce
On Thu, 23 Feb 2017,
Trisanna Sprung-Much wrote:

> Hi All
>
> I am trying to run a subject in 6.0 (it ran perfectly well in 5.3) and it stops when
> trying to transform to the "conformed" space. I get the following error after about a
> minute. I have not seen this error before.
>
> mri_convert ./tmp.mri_nu_correct.mni.2860/nu1.mnc orig_nu.mgz --like orig.mgz
> --conform
> mri_convert.bin ./tmp.mri_nu_correct.mni.2860/nu1.mnc orig_nu.mgz --like orig.mgz
> --conform
> ncopen: filename "./tmp.mri_nu_correct.mni.2860/nu1.mnc": Not a netCDF file
> miopen: MINC package entry point
> Error opening ./tmp.mri_nu_correct.mni.2860/nu1.mnc
> mincRead(): error reading volume from file ./tmp.mri_nu_correct.mni.2860/nu1.mnc
> $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
> reading from ./tmp.mri_nu_correct.mni.2860/nu1.mnc...
> Linux kaplan 3.13.0-105-generic #152-Ubuntu SMP Fri Dec 2 15:37:11 UTC 2016 x86_64
> x86_64 x86_64 GNU/Linux
>
> recon-all -s icbm-131 exited with ERRORS at Thu Feb 23 11:40:53 EST 2017
>
> To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>
>
> Any ideas?
>
> Best
>
> Trisanna
> --
> Ph.D. CandidateMcGill University
> Integrated Program in Neuroscience
> Psychology
>
>
>
>
>
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