External Email - Use Caution
Sorry, it was the qdec.fsgd file that I was looking for. Based on that,
I would say that you are having a scaling problem. The "AREA" column has
a scale that is much larger than the other columns. I would recommend
that you normalize the values (ie, subtract the mean and divide by the
sqrt of the sum of the squares)
On 06/15/2018 06:50 PM, Seung-Gul Kang (강승걸) wrote:
>
>
> Dear Dr. Douglas Greve,
>
> I am sorry for the the wrong file and also sorry if you have any
> inconvenience.
>
> Strange to say, I could not find y.fsgd file.
> Perhaps the file was not be created due to an error.
>
> Instead, I send the file folder which was generated after qdec.
> It contains the qdec.fsgd file.
> (I could not send y.mgh file due to capacity limit.)
>
> Thank you.
>
> Best regards,
> Seung-Gul
>
> *S**eung-Gul Kang, M.D., Ph.D. *
> Psychiatrist, Professor; Department of Psychiatry, Gil Medical Center
> 연구부학장. Dean, Department of Research Affairs; Gachon University
> College of Medicine
> 인천광역시자살예방센터장. Director, Incheon Suicide Prevention Center
> 21, Namdong-daero 774 beon-gil, Namdong-gu, Incheon, 21565, South Korea
>
>
>
> 2018년 6월 15일 (금) 오후 10:47, Douglas Greve <dgreve@mgh.harvard.edu
> <mailto:dgreve@mgh.harvard.edu>>님이 작성:
>
> Those are the qdec tables, not the fsgd file. Look in the qdec
> output folder for a file called y.fsgd. Also please remember to
> post to the list and not to us personally
>
>
> On 6/15/18 12:40 AM, Seung-Gul Kang (강승걸) wrote:
>>
>> External Email - Use Caution
>>
>> Hi Doug,
>>
>> Thank you for your reply.
>>
>> I send my FSGD files.
>> sui3_qdec.table
>> sui5_qdec.table - This file contains the normalization of SSI
>> score (nrSSI).
>>
>> I want to see the correlation (or regression) between the brain
>> surface areas with significant difference between two groups and
>> SSI score.
>> When I enter 'SSI' or 'nrSSI' into covariate in QDEC, then error
>> occurs.
>>
>> Best regards,
>> Seung-Gul
>>
>> *S**eung-Gul Kang, M.D., Ph.D. *
>> Psychiatrist, Professor; Department of Psychiatry, Gil Medical Center
>> 연구부학장. Dean, Department of Research Affairs; Gachon University
>> College of Medicine
>> 인천광역시자살예방센터장. Director, Incheon Suicide Prevention Center
>> 21, Namdong-daero 774 beon-gil, Namdong-gu, Incheon, 21565, South
>> Korea
>>
>> ᐧ
>>
>> 2018년 6월 15일 (금) 오전 12:26, Douglas N. Greve
>> <dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>>님이 작성:
>>
>> Please send the y.fsgd file
>>
>>
>> On 06/13/2018 09:30 PM, Seung-Gul Kang (강승걸) wrote:
>> >
>> > External Email - Use Caution
>> >
>> > Dear Freesurfer experts,
>> >
>> > I send you this e-mail again in anticipation of your help.
>> >
>> > I see the error message when I perform QDEC.
>> > The error message is as below.
>> >
>> > Id: mri_glmfit.c,v 1.196.2.8 2012/11/01 18:51:41 greve Exp $
>> >
>> > cwd /home/sgk
>> >
>> > cmdline mri_glmfit --y
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
>> > --fsgd /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd dods
>> > --glmdir /mnt/hgfs/share/suicide/qdec/LH_area_SSI --surf
>> fsaverage lh
>> > --label
>> /mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-area-SSI-Cor.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Cor-area-SSI.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Cor-area-SSI.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Cor-area-SSI.mat
>> >
>> > sysnameLinux
>> >
>> > hostname localhost.localdomain
>> >
>> > machinex86_64
>> >
>> > usersgk
>> >
>> > FixVertexAreaFlag = 1
>> >
>> > UseMaskWithSmoothing1
>> >
>> > OneSampleGroupMean 0
>> >
>> > y/mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
>> >
>> > logyflag 0
>> >
>> > usedti0
>> >
>> > FSGD /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd
>> >
>> > labelmask/mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label
>> >
>> > maskinv 0
>> >
>> > glmdir /mnt/hgfs/share/suicide/qdec/LH_area_SSI
>> >
>> > IllCondOK 0
>> >
>> > ReScaleX 1
>> >
>> > DoFFx 0
>> >
>> > Creating output directory
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI
>> >
>> > Loading y from /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
>> >
>> > INFO: gd2mtx_method is dods
>> >
>> > Saving design matrix to
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/Xg.dat
>> >
>> > Normalized matrix condition is 24522.5
>> >
>> > Design matrix ------------------
>> >
>> >
>> 1.0000.0000.0000.00015.0000.0000.0000.00024.0000.0000.0000.00021.0000.0000.0000.000149457.5940.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00019.0000.0000.0000.00050.0000.0000.0000.00020.0000.0000.0000.000161540.2030.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.0007.0000.0000.0000.00055.0000.0000.0000.00026.0000.0000.0000.000167295.9060.0000.0000.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00010.0000.0000.0000.00031.0000.0000.0000.00027.0000.0000.0000.000175241.7030.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00015.0000.0000.0000.00059.0000.0000.0000.00023.0000.0000.0000.000165616.7970.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00011.0000.0000.0000.00057.0000.0000.0000.00022.0000.0000.0000.000183255.5940.000;
>> >
>> >
>> 1.0000.0000.0000.00026.0000.0000.0000.00037.0000.0000.0000.00023.0000.0000.0000.000159212.2030.0000.0000.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00014.0000.0000.0000.00050.0000.0000.0000.00022.0000.0000.0000.000170017.0940.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00016.0000.0000.0000.00026.0000.0000.0000.00019.0000.0000.0000.000190217.9060.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.0001.0000.0000.0000.00039.0000.0000.0000.00019.0000.0000.0000.000156341.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00018.0000.0000.0000.00049.0000.0000.0000.00032.0000.0000.0000.000168844.2970.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00021.0000.0000.0000.00039.0000.0000.0000.00026.0000.0000.0000.000149945.4060.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00011.0000.0000.0000.00039.0000.0000.0000.00022.0000.0000.0000.000166132.9060.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00017.0000.0000.0000.00041.0000.0000.0000.00025.0000.0000.0000.000139924.4060.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00027.0000.0000.0000.00045.0000.0000.0000.00034.0000.0000.0000.000133331.7970.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00011.0000.0000.0000.00047.0000.0000.0000.00024.0000.0000.0000.000164844.7030.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00023.0000.0000.0000.00046.0000.0000.0000.00026.0000.0000.0000.000163024.2030.0000.0000.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00031.0000.0000.0000.00042.0000.0000.0000.00033.0000.0000.0000.000140203.7970.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00018.0000.0000.0000.00021.0000.0000.0000.00029.0000.0000.0000.000186282.2970.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.00018.0000.0000.0000.00021.0000.0000.0000.00017.0000.0000.0000.000171746.094;
>> >
>> >
>> 0.0001.0000.0000.0000.00017.0000.0000.0000.00034.0000.0000.0000.00015.0000.0000.0000.000145005.2030.0000.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.00015.0000.0000.0000.00054.0000.0000.0000.00027.0000.0000.0000.000168633.203;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.00017.0000.0000.0000.00027.0000.0000.0000.00020.0000.0000.0000.000186731.297;
>> >
>> >
>> 0.0001.0000.0000.0000.0001.0000.0000.0000.00061.0000.0000.0000.00028.0000.0000.0000.000154627.5000.0000.000;
>> >
>> >
>> 0.0001.0000.0000.0000.00010.0000.0000.0000.00044.0000.0000.0000.00022.0000.0000.0000.000154626.2970.0000.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.0004.0000.0000.0000.00059.0000.0000.0000.00020.0000.0000.0000.000177918.500;
>> >
>> >
>> 0.0001.0000.0000.0000.0004.0000.0000.0000.00056.0000.0000.0000.00027.0000.0000.0000.000157687.7970.0000.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.0008.0000.0000.0000.00058.0000.0000.0000.00032.0000.0000.0000.000173899.094;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.00021.0000.0000.0000.00020.0000.0000.0000.00018.0000.0000.0000.000175980.500;
>> >
>> >
>> 0.0001.0000.0000.0000.0000.0000.0000.0000.00059.0000.0000.0000.00028.0000.0000.0000.000162526.7030.0000.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.0002.0000.0000.0000.00037.0000.0000.0000.00020.0000.0000.0000.000198622.797;
>> >
>> >
>> 0.0001.0000.0000.0000.0003.0000.0000.0000.00032.0000.0000.0000.00024.0000.0000.0000.000157633.9060.0000.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.00017.0000.0000.0000.00021.0000.0000.0000.00021.0000.0000.0000.000164236.297;
>> >
>> >
>> 0.0001.0000.0000.0000.00022.0000.0000.0000.00046.0000.0000.0000.00023.0000.0000.0000.000144559.7030.0000.000;
>> >
>> >
>> 0.0001.0000.0000.0000.0007.0000.0000.0000.00032.0000.0000.0000.00024.0000.0000.0000.000156151.5000.0000.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.00016.0000.0000.0000.00046.0000.0000.0000.00027.0000.0000.0000.000154306.406;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.0000.0000.0000.0000.00019.0000.0000.0000.00020.0000.0000.0000.000188334.203;
>> >
>> >
>> 0.0001.0000.0000.0000.00020.0000.0000.0000.00055.0000.0000.0000.00026.0000.0000.0000.000134977.4060.0000.000;
>> >
>> > --------------------------------
>> >
>> > ERROR: matrix is ill-conditioned or badly scaled, condno =
>> 24522.5
>> >
>> > --------------------------------
>> >
>> > Possible problem with experimental design:
>> >
>> > Check for duplicate entries and/or lack of range of
>> >
>> > continuous variables within a class.
>> >
>> > If you seek help with this problem, make sure to send:
>> >
>> > 1. Your command line:
>> >
>> > mri_glmfit --y
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh --fsgd
>> > /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd dods
>> --glmdir
>> > /mnt/hgfs/share/suicide/qdec/LH_area_SSI --surf fsaverage
>> lh --label
>> > /mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-area-SSI-Cor.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Cor-area-SSI.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Cor-area-SSI.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Cor-area-SSI.mat
>> >
>> > 2. The FSGD file (if using one)
>> >
>> > 3. And the design matrix above
>> >
>> > Error in Analyze: command failed: mri_glmfit --y
>> > /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh --fsgd
>> > /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd dods
>> --glmdir
>> > /mnt/hgfs/share/suicide/qdec/LH_area_SSI --surf fsaverage
>> lh --label
>> > /mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-area-SSI-Cor.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Cor-area-SSI.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Cor-area-SSI.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Cor-area-SSI.mat
>> >
>> > I also attach the error message.
>> >
>> > Could you tell me how I can fix this problem?
>> >
>> > I am sincerely looking forward to receiving your reply.
>> >
>> > Best regards,
>> > Seung-Gul
>> >
>> > *S**eung-Gul Kang, M.D., Ph.D. *
>> > Psychiatrist, Professor; Department of Psychiatry, Gil
>> Medical Center
>> > 연구부학장. Dean, Department of Research Affairs; Gachon
>> University
>> > College of Medicine
>> > 인천광역시자살예방센터장. Director, Incheon Suicide Prevention
>> Center
>> > 21, Namdong-daero 774 beon-gil, Namdong-gu, Incheon, 21565,
>> South Korea
>> >
>> > ---------- Forwarded message ---------
>> > From: Seung-Gul Kang (강승걸) <sg.kang422@gmail.com
>> <mailto:sg.kang422@gmail.com>
>> > <mailto:sg.kang422@gmail.com <mailto:sg.kang422@gmail.com>>>
>> > Date: 2018년 6월 12일 (화) 오후 3:32
>> > Subject: Error during QDEC
>> > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu
>> <mailto:freesurfer@nmr.mgh.harvard.edu>
>> > <mailto:freesurfer@nmr.mgh.harvard.edu
>> <mailto:freesurfer@nmr.mgh.harvard.edu>>>
>> >
>> >
>> > Dear Freesurfer experts,
>> >
>> > I see the error message when I perform QDEC.
>> > The error message is as below.
>> >
>> > Id: mri_glmfit.c,v 1.196.2.8 2012/11/01 18:51:41 greve Exp $
>> >
>> > cwd /home/sgk
>> >
>> > cmdline mri_glmfit --y
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
>> > --fsgd /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd dods
>> > --glmdir /mnt/hgfs/share/suicide/qdec/LH_area_SSI --surf
>> fsaverage lh
>> > --label
>> /mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-area-SSI-Cor.mat--C
>>
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Cor-area-SSI.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Cor-area-SSI.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Cor-area-SSI.mat
>>
>> >
>> >
>> > sysnameLinux
>> >
>> > hostname localhost.localdomain
>> >
>> > machinex86_64
>> >
>> > usersgk
>> >
>> > FixVertexAreaFlag = 1
>> >
>> > UseMaskWithSmoothing1
>> >
>> > OneSampleGroupMean 0
>> >
>> > y/mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
>> >
>> > logyflag 0
>> >
>> > usedti0
>> >
>> > FSGD /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd
>> >
>> > labelmask/mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label
>> >
>> > maskinv 0
>> >
>> > glmdir /mnt/hgfs/share/suicide/qdec/LH_area_SSI
>> >
>> > IllCondOK 0
>> >
>> > ReScaleX 1
>> >
>> > DoFFx 0
>> >
>> > Creating output directory
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI
>> >
>> > Loading y from /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
>> >
>> > INFO: gd2mtx_method is dods
>> >
>> > Saving design matrix to
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/Xg.dat
>> >
>> > Normalized matrix condition is 24522.5
>> >
>> > Design matrix ------------------
>> >
>> >
>> 1.0000.0000.0000.00015.0000.0000.0000.00024.0000.0000.0000.00021.0000.0000.0000.000149457.5940.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00019.0000.0000.0000.00050.0000.0000.0000.00020.0000.0000.0000.000161540.2030.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.0007.0000.0000.0000.00055.0000.0000.0000.00026.0000.0000.0000.000167295.9060.0000.0000.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00010.0000.0000.0000.00031.0000.0000.0000.00027.0000.0000.0000.000175241.7030.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00015.0000.0000.0000.00059.0000.0000.0000.00023.0000.0000.0000.000165616.7970.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00011.0000.0000.0000.00057.0000.0000.0000.00022.0000.0000.0000.000183255.5940.000;
>> >
>> >
>> 1.0000.0000.0000.00026.0000.0000.0000.00037.0000.0000.0000.00023.0000.0000.0000.000159212.2030.0000.0000.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00014.0000.0000.0000.00050.0000.0000.0000.00022.0000.0000.0000.000170017.0940.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00016.0000.0000.0000.00026.0000.0000.0000.00019.0000.0000.0000.000190217.9060.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.0001.0000.0000.0000.00039.0000.0000.0000.00019.0000.0000.0000.000156341.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00018.0000.0000.0000.00049.0000.0000.0000.00032.0000.0000.0000.000168844.2970.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00021.0000.0000.0000.00039.0000.0000.0000.00026.0000.0000.0000.000149945.4060.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00011.0000.0000.0000.00039.0000.0000.0000.00022.0000.0000.0000.000166132.9060.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00017.0000.0000.0000.00041.0000.0000.0000.00025.0000.0000.0000.000139924.4060.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00027.0000.0000.0000.00045.0000.0000.0000.00034.0000.0000.0000.000133331.7970.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00011.0000.0000.0000.00047.0000.0000.0000.00024.0000.0000.0000.000164844.7030.0000.0000.000;
>> >
>> >
>> 1.0000.0000.0000.00023.0000.0000.0000.00046.0000.0000.0000.00026.0000.0000.0000.000163024.2030.0000.0000.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00031.0000.0000.0000.00042.0000.0000.0000.00033.0000.0000.0000.000140203.7970.000;
>> >
>> >
>> 0.0000.0001.0000.0000.0000.00018.0000.0000.0000.00021.0000.0000.0000.00029.0000.0000.0000.000186282.2970.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.00018.0000.0000.0000.00021.0000.0000.0000.00017.0000.0000.0000.000171746.094;
>> >
>> >
>> 0.0001.0000.0000.0000.00017.0000.0000.0000.00034.0000.0000.0000.00015.0000.0000.0000.000145005.2030.0000.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.00015.0000.0000.0000.00054.0000.0000.0000.00027.0000.0000.0000.000168633.203;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.00017.0000.0000.0000.00027.0000.0000.0000.00020.0000.0000.0000.000186731.297;
>> >
>> >
>> 0.0001.0000.0000.0000.0001.0000.0000.0000.00061.0000.0000.0000.00028.0000.0000.0000.000154627.5000.0000.000;
>> >
>> >
>> 0.0001.0000.0000.0000.00010.0000.0000.0000.00044.0000.0000.0000.00022.0000.0000.0000.000154626.2970.0000.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.0004.0000.0000.0000.00059.0000.0000.0000.00020.0000.0000.0000.000177918.500;
>> >
>> >
>> 0.0001.0000.0000.0000.0004.0000.0000.0000.00056.0000.0000.0000.00027.0000.0000.0000.000157687.7970.0000.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.0008.0000.0000.0000.00058.0000.0000.0000.00032.0000.0000.0000.000173899.094;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.00021.0000.0000.0000.00020.0000.0000.0000.00018.0000.0000.0000.000175980.500;
>> >
>> >
>> 0.0001.0000.0000.0000.0000.0000.0000.0000.00059.0000.0000.0000.00028.0000.0000.0000.000162526.7030.0000.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.0002.0000.0000.0000.00037.0000.0000.0000.00020.0000.0000.0000.000198622.797;
>> >
>> >
>> 0.0001.0000.0000.0000.0003.0000.0000.0000.00032.0000.0000.0000.00024.0000.0000.0000.000157633.9060.0000.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.00017.0000.0000.0000.00021.0000.0000.0000.00021.0000.0000.0000.000164236.297;
>> >
>> >
>> 0.0001.0000.0000.0000.00022.0000.0000.0000.00046.0000.0000.0000.00023.0000.0000.0000.000144559.7030.0000.000;
>> >
>> >
>> 0.0001.0000.0000.0000.0007.0000.0000.0000.00032.0000.0000.0000.00024.0000.0000.0000.000156151.5000.0000.000;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.00016.0000.0000.0000.00046.0000.0000.0000.00027.0000.0000.0000.000154306.406;
>> >
>> >
>> 0.0000.0000.0001.0000.0000.0000.0000.0000.0000.0000.00019.0000.0000.0000.00020.0000.0000.0000.000188334.203;
>> >
>> >
>> 0.0001.0000.0000.0000.00020.0000.0000.0000.00055.0000.0000.0000.00026.0000.0000.0000.000134977.4060.0000.000;
>> >
>> > --------------------------------
>> >
>> > ERROR: matrix is ill-conditioned or badly scaled, condno =
>> 24522.5
>> >
>> > --------------------------------
>> >
>> > Possible problem with experimental design:
>> >
>> > Check for duplicate entries and/or lack of range of
>> >
>> > continuous variables within a class.
>> >
>> > If you seek help with this problem, make sure to send:
>> >
>> > 1. Your command line:
>> >
>> > mri_glmfit --y
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh --fsgd
>> > /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd dods
>> --glmdir
>> > /mnt/hgfs/share/suicide/qdec/LH_area_SSI --surf fsaverage
>> lh --label
>> > /mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-area-SSI-Cor.mat--C
>>
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Cor-area-SSI.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Cor-area-SSI.mat--C
>>
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Cor-area-SSI.mat
>>
>> >
>> >
>> > 2. The FSGD file (if using one)
>> >
>> > 3. And the design matrix above
>> >
>> > Error in Analyze: command failed: mri_glmfit --y
>> > /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh --fsgd
>> > /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd dods
>> --glmdir
>> > /mnt/hgfs/share/suicide/qdec/LH_area_SSI --surf fsaverage
>> lh --label
>> > /mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-area-SSI-Cor.mat--C
>>
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Cor-area-SSI.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Cor-area-SSI.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Intercept-area.mat
>>
>> > --C
>> >
>> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Cor-area-SSI.mat
>> >
>> > I also attach the error message.
>> >
>> > Could you tell me how I can fix this problem?
>> >
>> > I am looking forward to receiving your reply.
>> >
>> > Best regards,
>> > Seung-Gul
>> >
>> > *S**eung-Gul Kang, M.D., Ph.D. *
>> > Psychiatrist, Professor; Department of Psychiatry, Gil
>> Medical Center
>> > 연구부학장. Dean, Department of Research Affairs; Gachon
>> University
>> > College of Medicine
>> > 인천광역시자살예방센터장. Director, Incheon Suicide Prevention
>> Center
>> > 21, Namdong-daero 774 beon-gil, Namdong-gu, Incheon, 21565,
>> South Korea
>> >
>> > ᐧ
>> > ᐧ
>>
>>
>>
>> The information in this e-mail is intended only for the
>> person to whom it is
>> addressed. If you believe this e-mail was sent to you in
>> error and the e-mail
>> contains patient information, please contact the Partners
>> Compliance HelpLine at
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>
> ᐧ