what was your mkanalysis-sess command?

On 06/08/2016 02:10 PM, Martin Juneja wrote:
> Dear FreeSurfer and SPM experts,
>
> I am trying to calculate functional connectivity maps using FreeSurfer
> pipeline:
> http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastFunctionalConnectivityWalkthrough.
>
> After defining a seed region on raw anatomical image, I co-registered
> functional data with anatomical data (as reference) and made sure that
> the seed is at correct place on both anatomical (top left in attached
> image) and functional (top right) data. Using SPM, I confirmed
> co-registration was fine.
>
> But after running all the steps of FC, looks like the FC maps are not
> correct: sig.nii.gz at -fthresh 2 3 (shown at bottom left) because I
> am not getting significant FC at seed location. Here, bottom right
> shows the seed location on surface after I convert the seed to
> fsaverage space (for visualization purpose).
>
> Any thoughts, ideas or tips on what went wrong here, would be really
> appreciated.
>
> Thanks.
>
>

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