External Email - Use Caution        

Dear Dr. Greve,

I have 45 subjects as input. SLURM is also a parallel processing pipeline similar to PBS, Grid Engine, or Condor: https://en.wikipedia.org/wiki/Slurm_Workload_Manager
I am not sure how can I speed up the mri_glmfit-sim processing.

Thanks !

On Thu, Dec 6, 2018 at 11:07 AM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu> wrote:
I don't know what Slurm is, so I guess the answer is no. If you have
multiple processors on your machine, you can use the --bg option. In
general, I have not seen it take that long to run. How many input
subjects do you have?

On 12/06/2018 12:55 PM, Sahil Bajaj wrote:
>
>         External Email - Use Caution
>
> Hello experts,
>
> I was trying to run mri_glmfit-sim --glmdir XY.glmdir --perm 1000 1.3
> abs --cwp 0.05 --2spaces command, but its taking forever even if I
> reduce # of permutations from 1000 to 10.
>
> I was just wondering if there’s a version of FreeSurfer for Slurm
> parallel processing clusters.
>
> Thanks !
> Sahil
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer