External Email - Use Caution
Thanks for your answer!
The full command line is:
mri_convert /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031/MR.MOCO_TRACOLINE_TEST.0031.0001.2021.01.13.12.54.51.790046.85818469.IMA /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031.nii
And the terminal output:
mri_convert /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031/MR.MOCO_TRACOLINE_TEST.0031.0001.2021.01.13.12.54.51.790046.85818469.IMA /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031.nii
reading from /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031/MR.MOCO_TRACOLINE_TEST.0031.0001.2021.01.13.12.54.51.790046.85818469.IMA...
INFO: this looks like a dicom, not an old Siemens .ima file, so I'm going to unpack it as a dicom.
If this fails, run mri_convert with -it dicom
Getting Series No
Scanning Directory
INFO: Found 29 files in /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031
INFO: Scanning for Series Number 31
INFO: found 27 files in series
INFO: loading series header info.
ERROR: GetSDCMFileInfo(): dcmGetDWIParams() 7
DICOM File: /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031/MR.MOCO_TRACOLINE_TEST.0031.0001.2021.01.13.12.54.51.790046.85818469.IMA
break /autofs/space/topaz_001/topaz_nightly_build/trunk/ah221-7.1.1/utils/DICOMRead.cpp:2639
ERROR: reading /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031/MR.MOCO_TRACOLINE_TEST.0031.0001.2021.01.13.12.54.51.790046.85818469.IMA
INFO: sorting.
Segmentation fault (core dumped)
Best regards,
Hannah
Can you send the full command line and terminal output?
On 1/22/2021 4:29 AM, Hannah Eichhorn wrote:
External Email - Use Caution
Dear all,
I am trying to convert Dicom volumes from a DWI Siemens sequence into nifty format, but I get the following error when I run the mri_convert Test.IMA Test.nii command:
ERROR: GetSDCMFileInfo(): dcmGetDWIParams() 7DICOM File: Test.IMAbreak /autofs/space/topaz_001/topaz_nightly_build/trunk/ah221-7.1.1/utils/DICOMRead.cpp:2639ERROR: reading Test.IMAINFO: sorting.Segmentation fault (core dumped)
I have searched the mail archive and didn't find similar errors. Does anyone have any thoughts on how to solve this error?
I am using FreeSurfer version: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551
Thank you,Hannah Eichhorn
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer