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Hello team,

We have first fixed non-cortex voxels in the pial surface using the brainmask.mgz volume, and we next corrected pial surfaces that mistakenly included cerebellum by creating a copy of 'brain.finalsurfs.mgz' named 'brain.finalsurfs.manedit.mgz' and erase problematic voxels in it . All these changes appeared correctly in brain.finalsurfs.mgz after running autorecon–pial in the two steps.

How could I get a .nii file containing all these changes in the native space (0.65x0.65x0.65)?

Thank you!