Can you please help me with which measures are not valid in this case? Are the cortical (e.g. thickness of ctx-rh-medialorbitofrontal) and subcortical measures (e.g. right pallidum) both invalid? aseg.mgz looks nice and aseg+aparc.mgz looks also nice. Only the pial seems to be affected.

Thank you in advance for your help.

Gabor Perlaki <petzinger.gabor@gmail.com> ezt írta (időpont: 2022. márc. 26., Szo, 12:56):

Could anybody please help me with this?

Gabor Perlaki <petzinger.gabor@gmail.com> ezt írta (időpont: 2022. márc. 22., K, 0:31):
Dear all,

fswiki suggests that " There are regions where the surfaces are not intended to be accurate that you should be aware of: Areas around the hippocampus and amygdala. "

I also found inaccuracy of the WM surface near the putamen and accumbens regions. WM surface goes into the putamen (please see the attached picture). Do I need to fix this error or is it normal? Are the thickness of ctx-rh-medialorbitofrontal and the volume of right putamen valid in this case?
Thank you in advance,
Gabor

--
Gabor Perlaki
research associate
Diagnostic Center of Pécs
H-7623 Pécs, Rét str. 2.
Tel.: 0036-30-2084367
E-mail: petzinger.gabor@gmail.com