Thanks Lilla!

Just to be sure, when using the --mni flag, should I remove the --template flag?

Also, is there any way I can calculate the registration directly to MNI305 and not MNI152?

Thanks again,

Noam

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Lilla Zollei <lzollei@nmr.mgh.harvard.edu>
Sent: Wednesday, August 1, 2018 8:35:49 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] mri_cvs_register using fsaverage

Hi Noam,

Can you can use the --mni flag?

"Use the CVS atlas in MNI152 space as a target for registration (as
opposed to the default CVS template)"

Lilla

On Wed, 1 Aug 2018, Peled, Noam wrote:

>
> I need to transfer one of our patient's electrodes locations (depth electrodes, they aren't located on the cortical surface) to MNI305 space.
> For that, I'm trying to use mri_cvs_register to register the patient to fsaverage. I'm using to the following command:
>
>
> mri_cvs_register --mov subjid --template fsaverage --outdir output_name --nocleanup
>
> And I'm getting the following error:
> fsaverage : at least one mean and/or Gaussian curvature file is missing (.H, .K)
>
> Indeed, fsaverage doesn't have the rh/lh.inflated.K/H files.
> Any ideas?
>
> Thanks,
> Noam
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