From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu>
Sent: Friday, May 10, 2019 3:06 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [External] Re: [Freesurfer] 7T submillimeter resolution processing

Hi Victor, it might make more sense to use the hires patch that we just developed last fall
MailScanner has detected a possible fraud attempt from "urldefense.proofpoint.com" claiming to be https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/hcp/
there is a README file there with instructions on how to install and use

Hi all,

I have a 7T dataset that I would like to have assistance in running FS6.0 for, and I have used this page as a reference: MailScanner has detected a possible fraud attempt from "urldefense.proofpoint.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/SubmillimeterRecon

I have some questions about the recon-all command, namely what the $IMAGE variable actually means. Also I have the $EXPERT_FILE as a txt file that just says: 

mris_inflate -n 100​. That is fine as well, right? 

Also I would like to know if the hippocampal/amyg nuc subfield parcellations is designed for 7T usage (In our neuroimaging lab, we've been using it for both 1.5T and 3T). 

Thanks for your help. 

Victor Zeng

Beth Israel Deaconess Medical Center

Keshavan Lab

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