Dear Freesurfer Community,
I ran the Freesurfer longitudinal pipeline for my subjects (7T, T1_data, 2 timepoints each).
Now I want to continue with the longitudinal segmentation of hippocampal subfields:
https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalHippocampalSubfields
However, when I want to run the command:
longHippoSubfieldsT1.sh <baseID>
I get the error message "bash: longHippoSubfieldsT1.sh: command not found"
First thing I did, was checking the Freesurfer folder for the longHippo..sh file.
I am using FS 6.0 but the file is not available.
So my questions: where can I get the file longHippoSubfieldsT1.sh or what else can I do to proceed with the HC subfield segmentation?
Thanks a lot for your support
Best
Sebastian
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