I&#39;m also interested in these segmentations for analysis in Matlab.<br><br>In particular, which volumes should be loaded to get the coordinates of the segmentations? <br><br>I assume the segmentation volumes are just indices (all voxel belonging to the same segment are assigned the same unique index), correct ?<br>
<br clear="all">---<br>Sincerly,<br>

Dr. Ørjan Bergmann<br>

<br>
<br><br><div class="gmail_quote">On Wed, Oct 27, 2010 at 14:25, Bruce Fischl <span dir="ltr">&lt;<a href="mailto:fischl@nmr.mgh.harvard.edu">fischl@nmr.mgh.harvard.edu</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Hi Aya,<br>
<br>
you should be able to convert our segmentations to Nifti, which I assume<br>
Brainvoyager can read. You can load any of our volumes into matlab with<br>
either MRIread.m or load_mgh.m and go from there.<br>
<br>
cheers<br>
Bruce<br>
<div><div></div><div class="h5"><br>
<br>
On Wed, 27 Oct 2010, Aya Ben Yakov wrote:<br>
<br>
&gt; Hi<br>
&gt;<br>
&gt; I used FreeSurfer to automatically segment subcortical structures, and I would now like to transfer the data to Matlab. I am looking for a way to load the coordinates of all structures (or, if it isn&#39;t possible, for each structure, by its number) to Matlab, in Talairach coordinates. Is this possible? If so - how can it be done?<br>

&gt;<br>
&gt; I use BrainVoyager, not FSL, for analysis, and I would like to somehow use the segmentation from FreeSurfer for analysis in Matlab, in combination with data I have from BrainVoyager (the functional data). I don&#39;t necessarily need talairach coordinates, but otherwise I&#39;m not sure how it would be possible to convert between FreeSurfer and BrainVoyager.<br>

&gt;<br>
&gt; Any suggestions?<br>
&gt; Thanks!<br>
&gt; Aya<br>
&gt;<br>
&gt;<br>
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