Right. I wondered why it went so fast - thanks again for the help. It is processing everything now.

Jesse

On Wed, Jul 29, 2009 at 11:18 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
you should probably use -force and -all

On Wed, 29 Jul 2009, Jesse Bledsoe wrote:

That worked, thank you. I used -force at the end instead of -all and it
looks good.

Jesse

On Wed, Jul 29, 2009 at 10:20 AM, Bruce Fischl
<fischl@nmr.mgh.harvard.edu>wrote:

Hi Jesse,

does that directory exist? Are you going to run recon-all afterwards? If
so, you might just do:

recon-all -i EF0114.mnc -s EF0114 -all

cheers,
Bruce



On Wed, 29 Jul 2009, Jesse Bledsoe wrote:

 Hello Everyone,

I am attempting to add .mnc data but get the following error when trying
to
convert using:

mri_convert subject.mnc subject/mri/orig/001.mgz

I am following the tutorial reconstruction slides online.

Here is the error:

mri_convert EF0114.mnc EF0114/orig/001.mgz
$Id: mri_convert.c,v 1.146.2.3 2008/08/11 22:18:58 nicks Exp $
reading from EF0114.mnc...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (1, 0, 0)
j_ras = (-0, -1, -0)
k_ras = (-0, -0, -1)
writing to EF0114/orig/001.mgz...
sh: EF0114/orig/001.mgz: No such file or directory
Broken pipe

Thank you in advance for any suggestions,

Jesse


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--
Jesse Bledsoe, M.A.
Clinical Psychology
Center for Neurodevelopmental Study
Michigan State University
110E Psychology Building
East Lansing, MI 48824
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Note: Information contained in this electronic message and any attachments to this message are intended for the exclusive use of the addressee(s) and may contain proprietary, confidential or privileged information. If you are not the intended recipient, you should not disseminate, distribute or copy this e-mail. Please notify the sender immediately and destroy all copies of this message and any attachments.