I had no idea they had added the FreeSurfer thalamic nuclei; thanks a lot for the pointer!
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of "Zeng, Victor (BIDMC - Keshavan - Psychiatry)" <vzeng@bidmc.harvard.edu>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, July 9, 2020 at 10:07
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] [External] The thalamic atlas in MNI space
You may be interested in https://www.oxcns.org/aal3.html AAL3, which has the estimations of the thalamus nucleis from fs6
Victor Zeng
Beth Israel Deaconess Medical Center
Keshavan Lab
--
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of
邹广源 <zouguangyuan@pku.edu.cn>
Sent: Wednesday, July 8, 2020 8:45 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [External] [Freesurfer] The thalamic atlas in MNI space
External Email - Use Caution
Dear experts
I am performing a fMRI analysis about the thalamus. I would like to see the overlap of my thalamic ROI with the atlas derived in
'A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology' (Iglesias, NeuroImage, 2018). Is there a version of this atlas in the MNI space? I found the 'ThalamicNuclei'
folder in FreeSurfer but it seems not an atlas in the MNI space. I am new in FreeSurfer. Could you please give me some suggestions?
Thanks for your time.
Best,
Guangyuan Zou
This message is intended for the use of the person(s) to whom it may be addressed. It may contain information that is privileged, confidential, or otherwise protected from disclosure under applicable law. If you are not the intended recipient, any dissemination,
distribution, copying, or use of this information is prohibited. If you have received this message in error, please permanently delete it and immediately notify the sender. Thank you.