Hi Bruce,

Thanks for the quick response. The label is a manually traced area of the cortex. It is in subject scanner space and has a single value, so it probably would not work with bbregister. I can load it in tkmedit as a segmentation and the alignment is correct. I attached a screenshot. Is there a way to select the values greater than zero in tkmedit and save as a label that could be used in vol2surf? I have other labels that are larger so I would prefer not to retrace them if possible.

Best,

Jonathan

On Sun, May 12, 2013 at 10:11 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

Hi Jonathan

what is the label? What space is it in? If it has gray/white contrast you could try bbregister.

cheers
Bruce

On Sat, 11 May 2013, Jonathan DuBois wrote:

Hi Freesurfer Experts,
I have a binary volume label in subject space that I converted from MINC to MGZ. I would like to register it to
the surface of that subject as a flat label. I thought I would be able to do so with mri_vol2surf but I am not
sure how to generate the required registration file. Is that the correct command, and if so, which registration
file should I use?

Thanks
Jonathan

The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.