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Hi,


That’s is great thank you I will check it out sorry I think I gave you the wrong scripts here is a different one from this year fi this would make anymore sense thankyou! 😊

 

Best wishes

 

Samantha

 

From: fsbuild <fsbuild@contbay.com>
Sent: 10 July 2025 22:16
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Re: Freesurfer output. Segmentation fault (core dumped) during parcellation step

 

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This posting indicates that changing the path to ./stats from ../stats got rid of a segmentation fault.  I would at least check that all paths in the arguments ro mris_anatomical_stats are correct though.

 

https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg10245.html

 

But I don’t see the error in the recon -all log you sent which is apparently from May 2020 showing Freesurfer 6.0.0 is being run on RedHat Enterprise Linux 7.5.

 

- R.



On Jul 10, 2025, at 16:24, Samantha Hendry <shendry2@ed.ac.uk> wrote:

 

mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab FMS_0094 lh white

 

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