Hello Bruce,

I am referring to link

http://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness

to calculate the cortical thickness of particular area such as Left hippocampus for our own data set.

But i am looking for forward to generate lh.thickness file in freesurfer for own data set which can be used as overlay. (Used for surface to surface overlay)

Can u suggest how to generate lh.thickness file for my own data using freesurfer...?

Thanks in advanced.

cheers
Saurabh Thakur,






On Tue, Mar 11, 2014 at 10:28 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
try configure->functional overlay or something like that after loading the thickness into a functional overlay

On Tue, 11 Mar 2014, Saurabh Thakur wrote:

I am referring one paper.
It mentioned about the freesurfer and cortical thickness they hv got in
tksurfer.

I m just want to know how to get that done in tksurfer.

I hv attached that paper for the reference.

cheers
Saurabh Thakur,






On Tue, Mar 11, 2014 at 7:14 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu>
wrote:
      what is it that you want to histogram? If the thickness,
      tksurfer will do
      this for you if you load it as an overlay. Or you can read it
      into matlab
      and show it there

      On Tue, 11 Mar 2014, Saurabh Thakur
      wrote:

      > Hello Freesurfer Expert,
      >
      > Can anyone help me with histogram plotting of different
      surfaces in
      > tksurfer.
      >
      > I looking to calculate the thickness of cortex.
      >
      > Thanks in advance,
      >
      >
      > Saurabh Thakur,
      >
      >
      >
      >
      >
      >
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