Currently there is no way to do this. But it might not be hard to add.
If I don't get back in a couple of weeks, send me a reminder.


On 02/14/2018 12:13 PM, Adam Martersteck wrote:
> Just a quick follow-up question,
> For FD/DVARS or other "censoring" criteria -- using -tpexclusion
> worked great for surface based analysis with mkanalsysis and selxavg3.
> Is there a way to do this for seed-to-seed analysis (fcseedcor)?
>
> Thanks!
>
> On Thu, Jan 25, 2018 at 4:00 PM, Douglas N Greve

> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
>
>     Yes,you need a time point exclusion file (-tpexclude filename
>     option to
>     mkanalysis-sess). Run mkanalysis with -help to get more info on how to
>     create it.
>
>     On 01/25/2018 04:43 PM, Adam Martersteck wrote:
>     > Hi Freesurer experts,
>     >
>     > I’m looking to censor (drop volumes) from my resting state fMRI time
>     > series that violate a predetermined motion and signal threshold (FD
>     > and DVARS). I've already determined which volumes violate X and Y
>     > criteria.
>     >
>     > Is there a way to to tell FS to "ignore" these time points in the
>     > analysis such as in preproc-sess or mkanalysis-sess?
>     >
>     > If there is not and if I were to drop the volumes directly from
>     the 4D
>     > file before starting any pre-processing and analysis  – would
>     that be
>     > a problem for finding and regressing the auto-correlation in the
>     time
>     > series?
>     >
>     > Thanks!
>     > Adam
>     >
>     >
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>     --
>     Douglas N. Greve, Ph.D.
>     MGH-NMR Center
>     greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
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