Hi Douglas, 

Yes it does seem like large parts of the cerebellum have been removed. Is there anything I could do to get around this problem?

Thanks. 

Regards, 
Heidi 

On Tuesday, 23 August 2016, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
It looks like there is a very large defect. Check the wm.mgz file to see
if the cerebellum has been removed.


On 08/21/2016 08:46 AM, Heidi Foo wrote:
> Dear FreeSurfer team,
>
> I apologize for sending this email again. I am currently running
> recon-all for my subjects but for 2 of them, it stops at XL correcting
> defect. Do you have any ideas how I can deal with this problem?
> Attached the log file for your reference.
>
> Thanks.
>
> Regards,
> Heidi
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.