Hi Paul, 

Does this happen in the base or in the long step?

-bigventricle has never been tested within the long stream and this is bug that needs to be fixed at some point (assuming the big ventricle is supported in the next release )

We should put this on our known issues list. 

Best, Martin


On 5. Jul 2018, at 18:23, miracle ozzoude <miracooloz@gmail.com> wrote:

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Hello All, 

When running the longitudinal pipeline for version 6, i encountered this error " TransformSample: gcam has not been inverted!; Numerical result out of range". I found a thread with similar error but the problem wasn't solved. https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2017-April/051240.html. 
Just like the previous thread, it happens whenever I include the "-bigventricle" flag. Below is a sample of my recon-all scripts from cross-sectional to longitudinal. The error.log and recon.log files are too large to send. Thank you. 

Best, 
Paul

Cross-sectional
recon-all -s ${SUBJECTS_DIR}/$session -autorecon-all -i ${filename} -hippocampal-subfields-T1 -parallel -openmp 20 -bigventricles -3T -time

Longitudinal 
recon-all -base ${session} -tp "${tp1}" -tp "${tp2}" -all -parallel -openmp 20 -bigventricles -3T -time 

recon-all -long ${tp1} ${session} -all -parallel -openmp 20 -bigventricles -3T -time
recon-all -long ${tp2} ${session} -all -parallel -openmp 20 -bigventricles -3T -time
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