Hi all,

I have a 7T dataset that I would like to have assistance in running FS6.0 for, and I have used this page as a reference: https://surfer.nmr.mgh.harvard.edu/fswiki/SubmillimeterRecon

I have some questions about the recon-all command, namely what the $IMAGE variable actually means. Also I have the $EXPERT_FILE as a txt file that just says:

mris_inflate -n 100. That is fine as well, right?

Also I would like to know if the hippocampal/amyg nuc subfield parcellations is designed for 7T usage (In our neuroimaging lab, we've been using it for both 1.5T and 3T).

Thanks for your help.

Victor Zeng

Beth Israel Deaconess Medical Center

Keshavan Lab

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