Wed Apr 24 20:41:25 EDT 2013 /autofs/homes/010/ayendiki /usr/local/freesurfer/dev/bin/trac-all -prep -c tract/dmrirc.tutorial Subject elmo.2008 SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/dev Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/dev build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20130423 ayendiki launchpad Linux launchpad 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 8192 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877832 14632376 18245456 0 619880 9100740 -/+ buffers/cache: 4911756 27966076 Swap: 67108848 22796 67086052 ######################################## Program versions: $Id: trac-all,v 1.47 2013/02/23 01:59:42 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:25-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ $Id: mri_cvs_register,v 1.45 2013/02/07 22:48:48 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:25-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:25-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:25-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:25-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 New invocation of trac-preproc ayendiki compute-0-3 Linux compute-0-3 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877836 5796004 27081832 0 183812 1209540 -/+ buffers/cache: 4402652 28475184 Swap: 67108856 91260 67017596 #------------------------------------- /usr/local/freesurfer/dev/bin/trac-preproc #------------------------------------- #@# Image corrections Wed Apr 24 20:42:04 EDT 2013 mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/orig/97000-000017-000001.dcm /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig.nii.gz mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/orig/97000-000017-000001.dcm /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/orig/97000-000017-000001.dcm... Getting Series No INFO: Found 5491 files in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/orig INFO: Scanning for Series Number 17 Scanning Directory INFO: found 70 files in series INFO: loading series header info. RunNo = 16 WARNING: Run 1 appears to be truncated Files Found: 70, Files Expected (lRep+1): 120 FileName /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/orig/97000-000017-000001.dcm Identification NumarisVer syngo MR B15 ScannerModel TrioTim PatientName CON04_07172008 Date and time StudyDate 20080717 StudyTime 082602.097000 SeriesTime 091538.382000 AcqTime 091309.512500 Acquisition parameters PulseSeq ep_b0#1 Protocol DTI PhEncDir COL EchoNo 1 FlipAngle 90 EchoTime 84 InversionTime -1 RepetitionTime 9850 PhEncFOV 237 ReadoutFOV 237 Image information RunNo 16 SeriesNo 17 ImageNo 1 NImageRows 1152 NImageCols 1152 NFrames 70 SliceArraylSize 79 IsMosaic 1 ImgPos 1042.7820 1078.5270 242.5410 VolRes 1.8516 1.8516 1.8500 VolDim 128 128 79 Vc -0.9997 -0.0232 -0.0095 Vr 0.0249 -0.9576 -0.2870 Vs -0.0024 -0.2872 0.9579 VolCenter 0.0000 0.0000 0.0000 TransferSyntaxUID 1.2.840.10008.1.2.1 INFO: sorting. INFO: (128 128 79), nframes = 70, ismosaic=1 Could not parse NUMARIS version string syngo MR B15 found in dicom tag 18,1020 (len = 3 != 6) Repetition Time = 9850, TR = 9850 ms PE Dir COL COL AutoAlign matrix detected AutoAlign Matrix --------------------- 1.000 -0.024 0.008 -0.140; 0.023 0.997 0.073 -9.350; -0.009 -0.073 0.997 -12.796; 0.000 0.000 0.000 1.000; This looks like an MGH DTI volume MGH DTI SeqPack Info 0 ep_b0#1 0.000000 1 1 ep_b0#2 0.000000 2 2 ep_b0#3 0.000000 3 3 ep_b0#4 0.000000 4 4 ep_b0#5 0.000000 5 5 ep_b0#6 0.000000 6 6 ep_b0#7 0.000000 7 7 ep_b0#8 0.000000 8 8 ep_b0#9 0.000000 9 9 ep_b0#10 0.000000 10 10 ep_b700#1 700.000000 1 11 ep_b700#2 700.000000 2 12 ep_b700#3 700.000000 3 13 ep_b700#4 700.000000 4 14 ep_b700#5 700.000000 5 15 ep_b700#6 700.000000 6 16 ep_b700#7 700.000000 7 17 ep_b700#8 700.000000 8 18 ep_b700#9 700.000000 9 19 ep_b700#10 700.000000 10 20 ep_b700#11 700.000000 11 21 ep_b700#12 700.000000 12 22 ep_b700#13 700.000000 13 23 ep_b700#14 700.000000 14 24 ep_b700#15 700.000000 15 25 ep_b700#16 700.000000 16 26 ep_b700#17 700.000000 17 27 ep_b700#18 700.000000 18 28 ep_b700#19 700.000000 19 29 ep_b700#20 700.000000 20 30 ep_b700#21 700.000000 21 31 ep_b700#22 700.000000 22 32 ep_b700#23 700.000000 23 33 ep_b700#24 700.000000 24 34 ep_b700#25 700.000000 25 35 ep_b700#26 700.000000 26 36 ep_b700#27 700.000000 27 37 ep_b700#28 700.000000 28 38 ep_b700#29 700.000000 29 39 ep_b700#30 700.000000 30 40 ep_b700#31 700.000000 31 41 ep_b700#32 700.000000 32 42 ep_b700#33 700.000000 33 43 ep_b700#34 700.000000 34 44 ep_b700#35 700.000000 35 45 ep_b700#36 700.000000 36 46 ep_b700#37 700.000000 37 47 ep_b700#38 700.000000 38 48 ep_b700#39 700.000000 39 49 ep_b700#40 700.000000 40 50 ep_b700#41 700.000000 41 51 ep_b700#42 700.000000 42 52 ep_b700#43 700.000000 43 53 ep_b700#44 700.000000 44 54 ep_b700#45 700.000000 45 55 ep_b700#46 700.000000 46 56 ep_b700#47 700.000000 47 57 ep_b700#48 700.000000 48 58 ep_b700#49 700.000000 49 59 ep_b700#50 700.000000 50 60 ep_b700#51 700.000000 51 61 ep_b700#52 700.000000 52 62 ep_b700#53 700.000000 53 63 ep_b700#54 700.000000 54 64 ep_b700#55 700.000000 55 65 ep_b700#56 700.000000 56 66 ep_b700#57 700.000000 57 67 ep_b700#58 700.000000 58 68 ep_b700#59 700.000000 59 69 ep_b700#60 700.000000 60 bValue = 700 nB0 = 10 nDir = 60 GradFile /usr/local/freesurfer/dev/diffusion/mgh-dti-seqpack/gradient_mgh_dti60.gdt FileName /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/orig/97000-000017-000070.dcm Identification NumarisVer syngo MR B15 ScannerModel TrioTim PatientName CON04_07172008 Date and time StudyDate 20080717 StudyTime 082602.097000 SeriesTime 091538.382000 AcqTime 092431.892500 Acquisition parameters PulseSeq ep_b700#60 Protocol DTI PhEncDir COL EchoNo 1 FlipAngle 90 EchoTime 84 InversionTime -1 RepetitionTime 9850 PhEncFOV 237 ReadoutFOV 237 Image information RunNo 16 SeriesNo 17 ImageNo 70 NImageRows 1152 NImageCols 1152 NFrames 70 SliceArraylSize 79 IsMosaic 1 ImgPos 1042.7820 1078.5270 242.5410 VolRes 1.8516 1.8516 1.8500 VolDim 128 128 79 Vc -0.9997 -0.0232 -0.0095 Vr 0.0249 -0.9576 -0.2870 Vs -0.0024 -0.2872 0.9579 VolCenter 0.0000 0.0000 0.0000 TransferSyntaxUID 1.2.840.10008.1.2.1 UseSliceScaleFactor 0 (slice 0: 1) sagrev = 0, correv =0, trarev = 0 Vs = -0.00244356 -0.287158 0.95788 INFO: no Siemens slice order reversal detected (good!). TR=9850.00, TE=84.00, TI=-1.00, flip angle=90.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (0.0249093, -0.957603, -0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig.nii.gz... Saving bvals and bvecs mri_probedicom --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/orig/97000-000017-000001.dcm > /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dcminfo.dat flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LPS INFO: input image determinant is 6.34232 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig.nii.gz x -y z /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig_flip.nii.gz INFO: left-right orientation was flipped by fslswapdim fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig_flip.nii.gz INFO: found /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig_flip.mghdti.bvecs /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvecs mv -f /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig_flip.mghdti.bvals /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvals eddy_correct /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_orig_flip.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz 0 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0000 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0001 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0002 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0003 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0004 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0005 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0006 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0007 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0008 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0009 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0010 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0011 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0012 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0013 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0014 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0015 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0016 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0017 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0018 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0019 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0020 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0021 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0022 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0023 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0024 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0025 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0026 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0027 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0028 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0029 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0030 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0031 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0032 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0033 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0034 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0035 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0036 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0037 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0038 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0039 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0040 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0041 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0042 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0043 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0044 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0045 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0046 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0047 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0048 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0049 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0050 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0051 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0052 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0053 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0054 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0055 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0056 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0057 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0058 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0059 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0060 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0061 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0062 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0063 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0064 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0065 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0066 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0067 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0068 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_tmp0069 mv -f /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvecs /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvecs.norot xfmrot /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.ecclog /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvecs.norot /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvecs ln -sf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/data.nii.gz mri_convert --frame 0 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame0.nii.gz mri_convert --frame 0 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame0.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 0 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame0.nii.gz... mri_convert --frame 1 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame1.nii.gz mri_convert --frame 1 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame1.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 1 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame1.nii.gz... mri_convert --frame 2 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame2.nii.gz mri_convert --frame 2 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame2.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 2 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame2.nii.gz... mri_convert --frame 3 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame3.nii.gz mri_convert --frame 3 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame3.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 3 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame3.nii.gz... mri_convert --frame 4 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame4.nii.gz mri_convert --frame 4 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame4.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 4 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame4.nii.gz... mri_convert --frame 5 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame5.nii.gz mri_convert --frame 5 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame5.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 5 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame5.nii.gz... mri_convert --frame 6 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame6.nii.gz mri_convert --frame 6 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame6.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 6 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame6.nii.gz... mri_convert --frame 7 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame7.nii.gz mri_convert --frame 7 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame7.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 7 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame7.nii.gz... mri_convert --frame 8 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame8.nii.gz mri_convert --frame 8 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame8.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 8 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame8.nii.gz... mri_convert --frame 9 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame9.nii.gz mri_convert --frame 9 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame9.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 9 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame9.nii.gz... mri_concat --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame0.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame1.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame2.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame3.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame4.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame5.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame6.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame7.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame8.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_frame9.nii.gz --mean --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz ninputs = 10 Checking inputs nframestot = 10 Allocing output Done allocing nframes = 10 Computing mean across frames Writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz bet /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb_brain_mask.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff #------------------------------------- #@# Intra-subject registration Wed Apr 24 21:28:45 EDT 2013 mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/brain.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat_orig.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/brain.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/brain.mgz... TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat_orig.nii.gz... flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat_orig.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat_orig.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat.nii.gz tkregister2 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat_orig.nii.gz --targ /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2anat.mat --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl target volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat.nii.gz movable volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat_orig.nii.gz reg file /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 INFO: loading target /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; -0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 0.000; -0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; -0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2anatorig.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2anat.mat Log file is /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.log Wed Apr 24 21:28:55 EDT 2013 setenv SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons cd /homes/10/ayendiki /usr/local/freesurfer/dev/bin/bbregister --s elmo.2008 --init-fsl --dti --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --fslmat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ Linux compute-0-3 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer/dev mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii... fslregister --s elmo.2008 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat --niters 1 --maxangle 90 --tmp /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov Log file is /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat.fslregister.log Wed Apr 24 21:29:42 EDT 2013 --s elmo.2008 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat --niters 1 --maxangle 90 --tmp /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov $Id: fslregister,v 1.36 2012/11/08 16:18:43 greve Exp $ compute-0-3 Linux compute-0-3 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /homes/10/ayendiki mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/brainmask.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/refvol.fslregister.nii mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/brainmask.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/brainmask.mgz... TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/refvol.fslregister.nii... -------------------------------------- /homes/10/ayendiki mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii --frame 0 mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 0 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii... Mov determinant is -6.34232 /homes/10/ayendiki tkregister2_cmdl --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/reg0.17532.dat --regheader --fslregout /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat.fsl.mat0 --s elmo.2008 --noedit tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii reg file /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/reg0.17532.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 INFO: loading target /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii Tmov: -------------------- -1.852 0.000 0.000 118.500; 0.000 0.000 1.850 -73.075; 0.000 -1.852 0.000 118.500; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.023 0.009 -0.450; -0.002 -0.287 0.958 -0.925; 0.025 -0.958 -0.287 1.852; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.023 0.009 -0.450; -0.002 -0.287 0.958 -0.925; 0.025 -0.958 -0.287 1.852; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2008 RegMat --------------------------- 1.000 0.023 0.009 -0.450; -0.002 -0.287 0.958 -0.925; 0.025 -0.958 -0.287 1.852; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -6.34232, ref det = -1 Wed Apr 24 21:30:04 EDT 2013 /homes/10/ayendiki flirt.fsl -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/refvol.fslregister.nii -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/fslmat0.trans.mat -schedule /usr/pubsw/packages/fsl/current/etc/flirtsch/xyztrans.sch -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat.fsl.mat0 Wed Apr 24 21:30:32 EDT 2013 /homes/10/ayendiki flirt.fsl -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/refvol.fslregister.nii -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat.fsl.mat -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/dev/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s elmo.2008 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat --fslreg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat.fsl.mat --noedit tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl ---- FSL registration matrix -------- 1.000 0.026 0.002 6.263; 0.010 -0.289 -0.957 223.164; -0.025 0.957 -0.289 38.787; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii reg file /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 INFO: loading target /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii Tmov: -------------------- -1.852 0.000 0.000 118.500; 0.000 0.000 1.850 -73.075; 0.000 -1.852 0.000 118.500; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -6.34232, ref det = -1 ---- Input registration matrix (computed) -------- 1.000 0.025 0.010 -0.074; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.025 0.010 -0.074; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2008 RegMat --------------------------- 1.000 0.025 0.010 -0.074; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Started at Wed Apr 24 21:29:42 EDT 2013 Ended at Wed Apr 24 21:31:17 EDT 2013 fslregister Done To check results, run: tkregister2 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat --surf orig mri_segreg --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii --init-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat --out-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.105 2011/10/27 18:36:43 greve Exp $ setenv SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons cd /autofs/homes/010/ayendiki mri_segreg --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii --init-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat --out-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname compute-0-3 machine x86_64 user ayendiki movvol /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii regfile /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.init.dat subject elmo.2008 dof 6 outregfile /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1367805508 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.025 0.010 -0.074; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 1.014541 1 -25.0 -25.0 25.0 1.049360 2 -25.0 25.0 -25.0 1.022171 3 -25.0 25.0 25.0 1.023642 4 25.0 -25.0 -25.0 1.000864 5 25.0 -25.0 25.0 0.979037 6 25.0 25.0 -25.0 1.042203 7 25.0 25.0 25.0 1.016997 REL: 8 0.305246 8.148815 1.018602 rel = 0.299671 Initial costs ---------------- Number of surface hits 2755 WM Intensity 198.2188 +/- 62.8957 Ctx Intensity 266.6985 +/- 90.6022 Pct Contrast 27.5624 +/- 30.4158 Cost 0.3052 RelCost 0.2997 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9583 0.9583 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9295 0.9295 0.0 5 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.8943 0.8943 0.0 32 -4.0000 -4.0000 0.0000 -4.0000 0.0000 4.0000 0.8826 0.8826 0.0 33 -4.0000 -4.0000 0.0000 -4.0000 4.0000 -4.0000 0.8456 0.8456 0.0 117 -4.0000 0.0000 0.0000 0.0000 -4.0000 -4.0000 0.8445 0.8445 0.0 118 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.0000 0.8160 0.8160 0.0 121 -4.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8158 0.8158 0.0 123 -4.0000 0.0000 0.0000 0.0000 4.0000 -4.0000 0.8113 0.8113 0.0 124 -4.0000 0.0000 0.0000 0.0000 4.0000 0.0000 0.7803 0.7803 0.0 274 0.0000 -4.0000 0.0000 -4.0000 0.0000 0.0000 0.7062 0.7062 0.0 355 0.0000 0.0000 0.0000 -4.0000 0.0000 0.0000 0.5571 0.5571 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3052 0.3052 0.0 Brute Force -------------------------- Min cost was 0.305246 Number of iterations 729 Search time 4.773000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000100 linmin_xtol_ 0.001000 powell nthiter 0 7 -0.242 0.000 0.000 0.000 0.000 0.000 0.2959639292 8 -0.266 0.000 0.000 0.000 0.000 0.000 0.2952715978 9 -0.401 0.000 0.000 0.000 0.000 0.000 0.2937394668 10 -0.388 0.000 0.000 0.000 0.000 0.000 0.2934783478 12 -0.376 0.000 0.000 0.000 0.000 0.000 0.2933607846 16 -0.376 1.000 0.000 0.000 0.000 0.000 0.2657059685 24 -0.376 0.948 0.000 0.000 0.000 0.000 0.2652138840 26 -0.376 0.956 0.000 0.000 0.000 0.000 0.2651515684 27 -0.376 0.973 0.000 0.000 0.000 0.000 0.2649540103 28 -0.376 0.983 0.000 0.000 0.000 0.000 0.2649016800 34 -0.376 0.983 1.000 0.000 0.000 0.000 0.2563735365 38 -0.376 0.983 0.618 0.000 0.000 0.000 0.2485412510 40 -0.376 0.983 0.609 0.000 0.000 0.000 0.2485095256 41 -0.376 0.983 0.608 0.000 0.000 0.000 0.2485086464 47 -0.376 0.983 0.608 -0.618 0.000 0.000 0.2172444828 49 -0.376 0.983 0.608 -0.696 0.000 0.000 0.2164981773 52 -0.376 0.983 0.608 -0.666 0.000 0.000 0.2164700414 54 -0.376 0.983 0.608 -0.678 0.000 0.000 0.2164623433 65 -0.376 0.983 0.608 -0.678 -0.086 0.000 0.2148164961 67 -0.376 0.983 0.608 -0.678 -0.094 0.000 0.2147425160 68 -0.376 0.983 0.608 -0.678 -0.105 0.000 0.2147132271 77 -0.376 0.983 0.608 -0.678 -0.105 -0.123 0.2115221733 83 -0.376 0.983 0.608 -0.678 -0.105 -0.122 0.2115196949 85 -0.376 0.983 0.608 -0.678 -0.105 -0.121 0.2115190271 powell nthiter 1 93 -0.238 0.983 0.608 -0.678 -0.105 -0.121 0.2083317692 95 -0.278 0.983 0.608 -0.678 -0.105 -0.121 0.2076307475 97 -0.270 0.983 0.608 -0.678 -0.105 -0.121 0.2075872057 98 -0.271 0.983 0.608 -0.678 -0.105 -0.121 0.2075866826 104 -0.271 0.365 0.608 -0.678 -0.105 -0.121 0.1944833167 106 -0.271 0.288 0.608 -0.678 -0.105 -0.121 0.1943385895 107 -0.271 0.292 0.608 -0.678 -0.105 -0.121 0.1943238745 108 -0.271 0.316 0.608 -0.678 -0.105 -0.121 0.1942310134 110 -0.271 0.317 0.608 -0.678 -0.105 -0.121 0.1942295206 111 -0.271 0.319 0.608 -0.678 -0.105 -0.121 0.1942290936 119 -0.271 0.319 0.627 -0.678 -0.105 -0.121 0.1936866923 121 -0.271 0.319 0.664 -0.678 -0.105 -0.121 0.1933467950 123 -0.271 0.319 0.669 -0.678 -0.105 -0.121 0.1933436409 130 -0.271 0.319 0.669 -1.296 -0.105 -0.121 0.1766288123 132 -0.271 0.319 0.669 -1.137 -0.105 -0.121 0.1761258141 133 -0.271 0.319 0.669 -1.192 -0.105 -0.121 0.1757387762 135 -0.271 0.319 0.669 -1.181 -0.105 -0.121 0.1756579599 137 -0.271 0.319 0.669 -1.175 -0.105 -0.121 0.1756406540 138 -0.271 0.319 0.669 -1.174 -0.105 -0.121 0.1756398817 139 -0.271 0.319 0.669 -1.173 -0.105 -0.121 0.1756394752 148 -0.271 0.319 0.669 -1.173 -0.169 -0.121 0.1743340622 149 -0.271 0.319 0.669 -1.173 -0.261 -0.121 0.1738982494 150 -0.271 0.319 0.669 -1.173 -0.238 -0.121 0.1733852158 151 -0.271 0.319 0.669 -1.173 -0.221 -0.121 0.1733601835 152 -0.271 0.319 0.669 -1.173 -0.228 -0.121 0.1733328895 161 -0.271 0.319 0.669 -1.173 -0.228 0.040 0.1715908883 163 -0.271 0.319 0.669 -1.173 -0.228 0.013 0.1715650020 165 -0.271 0.319 0.669 -1.173 -0.228 0.024 0.1715471629 166 -0.271 0.319 0.669 -1.173 -0.228 0.025 0.1715468926 powell nthiter 2 175 -0.209 0.319 0.669 -1.173 -0.228 0.025 0.1701303828 176 -0.177 0.319 0.669 -1.173 -0.228 0.025 0.1695527731 179 -0.172 0.319 0.669 -1.173 -0.228 0.025 0.1694619027 180 -0.165 0.319 0.669 -1.173 -0.228 0.025 0.1694011459 182 -0.162 0.319 0.669 -1.173 -0.228 0.025 0.1693965616 191 -0.162 0.184 0.669 -1.173 -0.228 0.025 0.1668167038 192 -0.162 0.170 0.669 -1.173 -0.228 0.025 0.1665155264 194 -0.162 0.099 0.669 -1.173 -0.228 0.025 0.1656096912 196 -0.162 0.111 0.669 -1.173 -0.228 0.025 0.1655067343 198 -0.162 0.114 0.669 -1.173 -0.228 0.025 0.1655018780 207 -0.162 0.114 0.653 -1.173 -0.228 0.025 0.1652679219 208 -0.162 0.114 0.568 -1.173 -0.228 0.025 0.1650700255 210 -0.162 0.114 0.600 -1.173 -0.228 0.025 0.1650558285 211 -0.162 0.114 0.588 -1.173 -0.228 0.025 0.1650376179 212 -0.162 0.114 0.586 -1.173 -0.228 0.025 0.1650372685 213 -0.162 0.114 0.585 -1.173 -0.228 0.025 0.1650372564 221 -0.162 0.114 0.585 -1.192 -0.228 0.025 0.1649478372 223 -0.162 0.114 0.585 -1.188 -0.228 0.025 0.1649369914 224 -0.162 0.114 0.585 -1.187 -0.228 0.025 0.1649367246 232 -0.162 0.114 0.585 -1.187 -0.248 0.025 0.1648184069 234 -0.162 0.114 0.585 -1.187 -0.249 0.025 0.1648174010 235 -0.162 0.114 0.585 -1.187 -0.250 0.025 0.1648170796 245 -0.162 0.114 0.585 -1.187 -0.250 -0.001 0.1647178125 247 -0.162 0.114 0.585 -1.187 -0.250 0.005 0.1647010476 249 -0.162 0.114 0.585 -1.187 -0.250 0.007 0.1647001509 powell nthiter 3 258 -0.190 0.114 0.585 -1.187 -0.250 0.007 0.1641480250 260 -0.221 0.114 0.585 -1.187 -0.250 0.007 0.1638692442 262 -0.213 0.114 0.585 -1.187 -0.250 0.007 0.1638268407 273 -0.213 0.110 0.585 -1.187 -0.250 0.007 0.1638265859 274 -0.213 0.112 0.585 -1.187 -0.250 0.007 0.1638246183 284 -0.213 0.112 0.546 -1.187 -0.250 0.007 0.1637925224 285 -0.213 0.112 0.562 -1.187 -0.250 0.007 0.1637499862 287 -0.213 0.112 0.560 -1.187 -0.250 0.007 0.1637489205 289 -0.213 0.112 0.558 -1.187 -0.250 0.007 0.1637486822 291 -0.213 0.112 0.559 -1.187 -0.250 0.007 0.1637485505 298 -0.213 0.112 0.559 -1.183 -0.250 0.007 0.1637185989 301 -0.213 0.112 0.559 -1.179 -0.250 0.007 0.1637090527 313 -0.213 0.112 0.559 -1.179 -0.248 0.007 0.1637066136 322 -0.213 0.112 0.559 -1.179 -0.248 -0.053 0.1626950469 324 -0.213 0.112 0.559 -1.179 -0.248 -0.112 0.1623217901 327 -0.213 0.112 0.559 -1.179 -0.248 -0.124 0.1622947880 329 -0.213 0.112 0.559 -1.179 -0.248 -0.126 0.1622934763 330 -0.213 0.112 0.559 -1.179 -0.248 -0.127 0.1622934547 powell nthiter 4 340 -0.188 0.112 0.559 -1.179 -0.248 -0.127 0.1622391914 342 -0.197 0.112 0.559 -1.179 -0.248 -0.127 0.1621941047 351 -0.197 0.115 0.559 -1.179 -0.248 -0.127 0.1621682441 353 -0.197 0.125 0.559 -1.179 -0.248 -0.127 0.1621251940 354 -0.197 0.124 0.559 -1.179 -0.248 -0.127 0.1621250005 364 -0.197 0.124 0.554 -1.179 -0.248 -0.127 0.1621200926 373 -0.197 0.124 0.554 -1.188 -0.248 -0.127 0.1620577148 375 -0.197 0.124 0.554 -1.192 -0.248 -0.127 0.1620495701 386 -0.197 0.124 0.554 -1.192 -0.235 -0.127 0.1620127716 387 -0.197 0.124 0.554 -1.192 -0.239 -0.127 0.1620003646 399 -0.197 0.124 0.554 -1.192 -0.239 -0.136 0.1619725887 powell nthiter 5 411 -0.195 0.124 0.554 -1.192 -0.239 -0.136 0.1619638468 412 -0.192 0.124 0.554 -1.192 -0.239 -0.136 0.1619599165 414 -0.193 0.124 0.554 -1.192 -0.239 -0.136 0.1619587807 434 -0.193 0.124 0.558 -1.192 -0.239 -0.136 0.1619573742 435 -0.193 0.124 0.556 -1.192 -0.239 -0.136 0.1619569169 443 -0.193 0.124 0.556 -1.199 -0.239 -0.136 0.1619546852 444 -0.193 0.124 0.556 -1.197 -0.239 -0.136 0.1619516893 466 -0.193 0.124 0.556 -1.197 -0.239 -0.140 0.1619442510 powell nthiter 6 479 -0.192 0.124 0.556 -1.197 -0.239 -0.140 0.1619439906 499 -0.192 0.124 0.560 -1.197 -0.239 -0.140 0.1619432673 520 -0.192 0.124 0.560 -1.197 -0.242 -0.140 0.1619426418 522 -0.192 0.124 0.560 -1.197 -0.241 -0.140 0.1619415913 532 -0.192 0.124 0.560 -1.197 -0.241 -0.142 0.1619406881 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 1.000415 1 -25.0 -25.0 25.0 1.021523 2 -25.0 25.0 -25.0 1.001151 3 -25.0 25.0 25.0 1.011425 4 25.0 -25.0 -25.0 1.005384 5 25.0 -25.0 25.0 0.981043 6 25.0 25.0 -25.0 1.044042 7 25.0 25.0 25.0 1.009925 REL: 8 0.161941 8.074909 1.009364 rel = 0.160438 Number of iterations 6 Min cost was 0.161941 Number of FunctionCalls 534 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 1.622000 sec Parameters at optimum (transmm) -0.19175 0.12438 0.55993 Parameters at optimum (rotdeg) -1.19653 -0.24082 -0.14169 Final costs ---------------- Number of surface hits 2755 WM Intensity 193.0869 +/- 61.8793 Ctx Intensity 266.2903 +/- 78.1898 Pct Contrast 30.9406 +/- 26.9339 Cost 0.1619 RelCost 0.2997 Reg at min cost was 1.000 0.028 0.013 -0.295; -0.004 -0.309 0.951 -7.385; 0.031 -0.951 -0.309 3.099; 0.000 0.000 0.000 1.000; Writing optimal reg to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat, type = 14 Original Reg 1.000 0.025 0.010 -0.074; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 -0.003 -0.004 0.221; 0.002 0.020 0.006 -0.176; -0.004 -0.006 0.020 -0.717; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 1.154829 Computing change in rh position Surface RMS Diff (mm) 1.197393 2.438182 mri_segreg done mri_segreg --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii --init-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat --out-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.105 2011/10/27 18:36:43 greve Exp $ setenv SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons cd /autofs/homes/010/ayendiki mri_segreg --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii --init-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat --out-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname compute-0-3 machine x86_64 user ayendiki movvol /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/template.nii regfile /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/tmp.bbregister.17409/bbr.pass1.dat subject elmo.2008 dof 6 outregfile /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1367379898 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.028 0.013 -0.295; -0.004 -0.309 0.951 -7.385; 0.031 -0.951 -0.309 3.099; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 1.005094 1 -25.0 -25.0 25.0 1.029688 2 -25.0 25.0 -25.0 1.023471 3 -25.0 25.0 25.0 1.013143 4 25.0 -25.0 -25.0 1.011972 5 25.0 -25.0 25.0 1.005442 6 25.0 25.0 -25.0 1.030741 7 25.0 25.0 25.0 1.020583 REL: 8 0.187648 8.140134 1.017517 rel = 0.184418 Initial costs ---------------- Number of surface hits 275274 WM Intensity 193.5692 +/- 61.5205 Ctx Intensity 266.4650 +/- 79.4073 Pct Contrast 30.8061 +/- 26.8173 Cost 0.1876 RelCost 0.1844 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1791 0.1791 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1767 0.1767 0.0 2 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.1761 0.1761 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.1744 0.1744 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.1744 0.1744 0.0 6 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.1729 0.1729 0.0 13 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.1718 0.1718 0.0 16 -0.1000 -0.1000 -0.1000 0.0000 0.1000 0.0000 0.1717 0.1717 0.0 22 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.1713 0.1713 0.0 34 -0.1000 -0.1000 0.0000 -0.1000 0.1000 0.0000 0.1710 0.1710 0.0 38 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1000 0.1702 0.1702 0.0 40 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.1674 0.1674 0.0 41 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.1000 0.1672 0.1672 0.0 68 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.1000 0.1670 0.1670 0.0 121 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1660 0.1660 0.0 131 -0.1000 0.0000 0.0000 0.1000 0.0000 0.1000 0.1660 0.1660 0.0 149 -0.1000 0.0000 0.1000 0.0000 0.0000 0.1000 0.1660 0.1660 0.0 158 -0.1000 0.0000 0.1000 0.1000 0.0000 0.1000 0.1654 0.1654 0.0 283 0.0000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.1654 0.1654 0.0 337 0.0000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.1652 0.1652 0.0 363 0.0000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.1639 0.1639 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1619 0.1619 0.0 Brute Force -------------------------- Min cost was 0.161941 Number of iterations 729 Search time 1.400000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000000 linmin_xtol_ 0.001000 powell nthiter 0 7 0.105 0.000 0.000 0.000 0.000 0.000 0.1868999268 8 0.095 0.000 0.000 0.000 0.000 0.000 0.1868892445 17 0.095 0.020 0.000 0.000 0.000 0.000 0.1868351714 18 0.095 0.025 0.000 0.000 0.000 0.000 0.1868346757 19 0.095 0.023 0.000 0.000 0.000 0.000 0.1868343063 27 0.095 0.023 0.087 0.000 0.000 0.000 0.1865346347 29 0.095 0.023 0.083 0.000 0.000 0.000 0.1865333171 30 0.095 0.023 0.082 0.000 0.000 0.000 0.1865332839 38 0.095 0.023 0.082 -0.066 0.000 0.000 0.1862709400 40 0.095 0.023 0.082 -0.064 0.000 0.000 0.1862708421 41 0.095 0.023 0.082 -0.063 0.000 0.000 0.1862706304 48 0.095 0.023 0.082 -0.063 0.030 0.000 0.1861618880 49 0.095 0.023 0.082 -0.063 0.036 0.000 0.1861503753 51 0.095 0.023 0.082 -0.063 0.042 0.000 0.1861460872 52 0.095 0.023 0.082 -0.063 0.043 0.000 0.1861459577 60 0.095 0.023 0.082 -0.063 0.043 0.149 0.1848128853 61 0.095 0.023 0.082 -0.063 0.043 0.155 0.1847964139 62 0.095 0.023 0.082 -0.063 0.043 0.191 0.1847889235 64 0.095 0.023 0.082 -0.063 0.043 0.174 0.1847698039 66 0.095 0.023 0.082 -0.063 0.043 0.176 0.1847696712 powell nthiter 1 77 0.083 0.023 0.082 -0.063 0.043 0.176 0.1847680395 79 0.089 0.023 0.082 -0.063 0.043 0.176 0.1847619980 89 0.089 0.031 0.082 -0.063 0.043 0.176 0.1847570772 99 0.089 0.031 0.081 -0.063 0.043 0.176 0.1847570682 108 0.089 0.031 0.081 -0.068 0.043 0.176 0.1847550592 109 0.089 0.031 0.081 -0.069 0.043 0.176 0.1847548797 117 0.089 0.031 0.081 -0.069 0.001 0.176 0.1845909435 119 0.089 0.031 0.081 -0.069 0.008 0.176 0.1845825410 123 0.089 0.031 0.081 -0.069 0.009 0.176 0.1845825286 powell nthiter 2 141 0.112 0.031 0.081 -0.069 0.009 0.176 0.1845398093 142 0.110 0.031 0.081 -0.069 0.009 0.176 0.1845375913 143 0.106 0.031 0.081 -0.069 0.009 0.176 0.1845355590 154 0.106 0.029 0.081 -0.069 0.009 0.176 0.1845342214 163 0.106 0.029 0.089 -0.069 0.009 0.176 0.1845167675 164 0.106 0.029 0.099 -0.069 0.009 0.176 0.1845165175 166 0.106 0.029 0.094 -0.069 0.009 0.176 0.1845141602 167 0.106 0.029 0.095 -0.069 0.009 0.176 0.1845141481 176 0.106 0.029 0.095 -0.068 0.009 0.176 0.1845141072 184 0.106 0.029 0.095 -0.068 -0.008 0.176 0.1844924261 185 0.106 0.029 0.095 -0.068 -0.007 0.176 0.1844907689 186 0.106 0.029 0.095 -0.068 -0.003 0.176 0.1844887610 188 0.106 0.029 0.095 -0.068 -0.004 0.176 0.1844886224 198 0.106 0.029 0.095 -0.068 -0.004 0.179 0.1844872763 powell nthiter 3 208 0.117 0.029 0.095 -0.068 -0.004 0.179 0.1844796313 209 0.116 0.029 0.095 -0.068 -0.004 0.179 0.1844781059 210 0.114 0.029 0.095 -0.068 -0.004 0.179 0.1844773297 219 0.114 0.033 0.095 -0.068 -0.004 0.179 0.1844767395 220 0.114 0.031 0.095 -0.068 -0.004 0.179 0.1844763551 230 0.114 0.031 0.096 -0.068 -0.004 0.179 0.1844762627 250 0.114 0.031 0.096 -0.068 -0.006 0.179 0.1844757017 252 0.114 0.031 0.096 -0.068 -0.005 0.179 0.1844756533 277 0.114 0.032 0.096 -0.068 -0.005 0.180 0.1844756425 powell nthiter 4 327 0.114 0.031 0.096 -0.068 -0.006 0.180 0.1844756308 335 0.115 0.032 0.096 -0.068 -0.006 0.180 0.1844754159 337 0.115 0.032 0.096 -0.068 -0.006 0.180 0.1844752854 357 0.114 0.032 0.096 -0.068 -0.006 0.180 0.1844752756 359 0.114 0.032 0.096 -0.068 -0.006 0.180 0.1844752637 361 0.114 0.032 0.096 -0.068 -0.006 0.180 0.1844752616 362 0.114 0.032 0.096 -0.068 -0.006 0.180 0.1844752523 powell nthiter 5 373 0.114 0.032 0.096 -0.068 -0.006 0.179 0.1844751971 417 0.115 0.032 0.096 -0.068 -0.007 0.179 0.1844751663 421 0.115 0.032 0.096 -0.068 -0.007 0.179 0.1844751017 425 0.115 0.032 0.096 -0.068 -0.007 0.179 0.1844750503 426 0.115 0.032 0.096 -0.068 -0.007 0.179 0.1844750178 427 0.115 0.032 0.096 -0.068 -0.007 0.179 0.1844749987 428 0.115 0.032 0.096 -0.068 -0.007 0.179 0.1844749933 powell nthiter 6 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 1.005113 1 -25.0 -25.0 25.0 1.030966 2 -25.0 25.0 -25.0 1.023473 3 -25.0 25.0 25.0 1.012630 4 25.0 -25.0 -25.0 1.010288 5 25.0 -25.0 25.0 1.004662 6 25.0 25.0 -25.0 1.031998 7 25.0 25.0 25.0 1.020228 REL: 8 0.184475 8.139357 1.017420 rel = 0.181317 Number of iterations 6 Min cost was 0.184475 Number of FunctionCalls 500 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 84.261000 sec Parameters at optimum (transmm) 0.11474 0.03180 0.09642 Parameters at optimum (rotdeg) -0.06806 -0.00669 0.17936 Final costs ---------------- Number of surface hits 275274 WM Intensity 193.3424 +/- 60.9443 Ctx Intensity 266.5937 +/- 79.0250 Pct Contrast 30.9771 +/- 26.6508 Cost 0.1845 RelCost 0.1844 Reg at min cost was 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.351; 0.031 -0.950 -0.310 3.204; 0.000 0.000 0.000 1.000; Writing optimal reg to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.028 0.013 -0.295; -0.004 -0.309 0.951 -7.385; 0.031 -0.951 -0.309 3.099; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 -0.001 0.003 -0.137; -0.003 0.001 0.000 -0.035; -0.000 -0.000 0.001 -0.105; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.187111 Computing change in rh position Surface RMS Diff (mm) 0.206535 0.380336 mri_segreg done tkregister2_cmdl --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz reg file /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.351; 0.031 -0.950 -0.310 3.204; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz Tmov: -------------------- -1.852 0.000 0.000 118.500; 0.000 0.000 1.850 -73.075; 0.000 -1.852 0.000 118.500; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.351; 0.031 -0.950 -0.310 3.204; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2008 RegMat --------------------------- 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.351; 0.031 -0.950 -0.310 3.204; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -6.34232, ref det = -1 Cleaning up Started at Wed Apr 24 21:28:55 EDT 2013 Ended at Wed Apr 24 21:33:40 EDT 2013 BBR-Run-Time-Sec 285 bbregister Done To check results, run: tkregister2 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat -concat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2diff.bbr.mat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2anatorig.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2anat.bbr.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Wed Apr 24 21:33:41 EDT 2013 flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat_mni.nii.gz -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/mni2anat.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat -concat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/mni2diff.bbr.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2mni.mat -concat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2anat.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/mni2anatorig.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Wed Apr 24 21:37:28 EDT 2013 mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 475560 values in range Counting number of voxels in first frame Found 475560 voxels in final mask mri_binarize done mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 505262 values in range Counting number of voxels in first frame Found 505262 voxels in final mask mri_binarize done mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 fstart = 0, fend = 0, nframes = 1 Found 20984 values in range Counting number of voxels in first frame Found 20984 voxels in final mask mri_binarize done mri_aparc2aseg --s elmo.2008 --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons subject elmo.2008 outvol /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /space/freesurfer/subjects/diffusion_recons/elmo.2008/surf/lh.white Reading lh pial surface /space/freesurfer/subjects/diffusion_recons/elmo.2008/surf/lh.pial Loading lh annotations from /space/freesurfer/subjects/diffusion_recons/elmo.2008/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /space/freesurfer/subjects/diffusion_recons/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /space/freesurfer/subjects/diffusion_recons/elmo.2008/surf/rh.white Reading rh pial surface /space/freesurfer/subjects/diffusion_recons/elmo.2008/surf/rh.pial Loading rh annotations from /space/freesurfer/subjects/diffusion_recons/elmo.2008/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /space/freesurfer/subjects/diffusion_recons/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/ribbon.mgz Loading filled from /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 1004986 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 4 clusters 0 k 1.000000 1 k 867.000000 2 k 2.000000 3 k 1.000000 Fixing Parahip RH WM Found 1 clusters 0 k 756.000000 Writing output aseg to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 558497 values in range Counting number of voxels in first frame Found 558497 voxels in final mask mri_binarize done mri_binarize --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 835067 values in range Counting number of voxels in first frame Found 835067 voxels in final mask mri_binarize done mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz --match 16 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz --match 16 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 21025 values in range Counting number of voxels in first frame Found 21025 voxels in final mask mri_binarize done fslmaths /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz -add /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/Brain-Stem.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/brainmask.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/brainmask.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/brainmask.mgz... TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz -mul /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/notventricles.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_recons/elmo.2008/mri/aparc+aseg.mgz... TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/White-Matter.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/White-Matter.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/White-Matter.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/White-Matter.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/White-Matter.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/White-Matter.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/White-Matter++.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/White-Matter++.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/White-Matter++.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/notventricles.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/notventricles.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/notventricles.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/notventricles.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/notventricles.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/notventricles.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/cortex.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex+2mm.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex+2mm.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/cortex+2mm.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex+2mm.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex+2mm+bs.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/cortex+2mm+bs.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/aparc+aseg.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/aparc+aseg+2mm.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg_mask.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/anat_brain_mask-vent.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz -k /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi_snr.txt flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lowb_brain_mask.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/brain_anat_orig.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour ln -sf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Wed Apr 24 21:45:40 EDT 2013 dtifit -k /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz -m /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvecs -b /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvals -o /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit 0 128 0 128 0 79 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed 57 slices processed 58 slices processed 59 slices processed 60 slices processed 61 slices processed 62 slices processed 63 slices processed 64 slices processed 65 slices processed 66 slices processed 67 slices processed 68 slices processed 69 slices processed 70 slices processed 71 slices processed 72 slices processed 73 slices processed 74 slices processed 75 slices processed 76 slices processed 77 slices processed 78 slices processed flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit_FA.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit_L1.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit_L2.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit_L3.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit_MD.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit_MO.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit_S0.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Wed Apr 24 21:46:36 EDT 2013 /usr/local/freesurfer/dev/bin/dmri_train --outdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.elmo.2008.17998.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz --fa /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit_FA.nii.gz --cptdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc cwd /autofs/homes/010/ayendiki cmdline /usr/local/freesurfer/dev/bin/dmri_train --outdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.elmo.2008.17998.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz --fa /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit_FA.nii.gz --cptdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc sysname Linux hostname compute-0-3 machine x86_64 user ayendiki Output directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni Output directory in test subject's space: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.elmo.2008.17998.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit_FA.nii.gz Loading affine registration from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 599 streamlines for straying off mask INFO: Rejected 78 streamlines for reversing direction INFO: Rejected 35 streamlines as length outliers INFO: Have 7720 total streamlines (min/mean/max length: 59/99/132) Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4944 non-truncated streamlines (min/mean/max length: 59/99/132) INFO: Center of mass of start points: (98+/-3, 98+/-6, 39+/-12) INFO: Center of mass of midpoints: (112+/-3, 110+/-4, 78+/-7) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-6) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 38282 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0281392 INFO: Points where local peeks in curvature occur are 100 104 52 (curv = 0.0739372) 109 110 69 (curv = 0.0484531) 115 109 97 (curv = 0.0318118) 116 108 102 (curv = 0.0491033) 114 104 115 (curv = 0.0385678) 111 104 130 (curv = 0.0426496) INFO: Intermediate dominant points are 100 99 33 100 104 52 109 110 69 116 108 102 113 104 120 113 104 142 INFO: Final dominant points are 100 99 33 100 104 52 109 110 69 116 108 102 111 104 130 113 104 142 INFO: Selected control points are 100 99 33 100 105 52 109 110 70 115 108 102 111 103 129 113 104 142 INFO: Distances between consecutive points are 20 21 33 28 13 INFO: Selected control points in test subject's space are 69 58 8 69 60 18 74 61 27 77 58 43 75 54 56 77 53 63 INFO: Distances between consecutive points in test subject's space are 10 10 17 14 7 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 117.131 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 1103 streamlines for straying off mask INFO: Rejected 75 streamlines for reversing direction INFO: Rejected 31 streamlines as length outliers INFO: Have 8087 total streamlines (min/mean/max length: 58/98/139) Processing pathway 2 of 18... Matching streamline ends INFO: Have 4995 non-truncated streamlines (min/mean/max length: 58/98/138) INFO: Center of mass of start points: (82+/-3, 97+/-6, 41+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 79+/-7) INFO: Center of mass of end points: (68+/-8, 105+/-11, 141+/-7) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 44783 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 115 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0315989 INFO: Points where local peeks in curvature occur are 80 96 46 (curv = 0.0447592) 78 101 58 (curv = 0.0480854) 74 107 65 (curv = 0.0525972) 69 110 73 (curv = 0.0382519) 66 110 81 (curv = 0.032785) 63 110 104 (curv = 0.0677648) 67 105 119 (curv = 0.0413354) 71 104 132 (curv = 0.0831429) INFO: Intermediate dominant points are 80 95 27 80 96 46 74 107 65 63 110 104 71 104 132 71 108 145 INFO: Final dominant points are 80 95 27 80 96 46 74 107 65 63 110 104 71 104 132 71 108 145 INFO: Selected control points are 80 95 27 80 94 47 72 108 66 63 110 103 71 104 130 71 108 145 INFO: Distances between consecutive points are 20 25 38 29 16 INFO: Selected control points in test subject's space are 59 56 5 59 54 15 55 60 26 51 58 44 55 54 57 55 55 65 INFO: Distances between consecutive points in test subject's space are 10 13 19 14 8 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 129.721 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 53 streamlines for straying off mask INFO: Rejected 29 streamlines for reversing direction INFO: Rejected 22 streamlines as length outliers INFO: Have 3504 total streamlines (min/mean/max length: 53/91/135) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1421 non-truncated streamlines (min/mean/max length: 53/97/135) INFO: Center of mass of start points: (134+/-8, 137+/-5, 41+/-10) INFO: Center of mass of midpoints: (133+/-4, 103+/-3, 59+/-5) INFO: Center of mass of end points: (114+/-13, 47+/-12, 71+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 38426 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.032025 INFO: Points where local peeks in curvature occur are 132 117 53 (curv = 0.060036) 134 109 56 (curv = 0.0410491) 135 95 59 (curv = 0.0780916) 126 76 69 (curv = 0.0630608) 120 60 69 (curv = 0.0507169) INFO: Intermediate dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Final dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Selected control points are 136 136 36 132 117 54 134 95 59 127 76 68 109 48 69 INFO: Distances between consecutive points are 26 23 22 33 INFO: Selected control points in test subject's space are 87 77 12 85 66 20 87 55 20 83 44 24 75 30 22 INFO: Distances between consecutive points in test subject's space are 14 11 12 16 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 28.32 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 28 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2112 total streamlines (min/mean/max length: 52/91/129) Processing pathway 4 of 18... Matching streamline ends INFO: Have 1022 non-truncated streamlines (min/mean/max length: 57/100/126) INFO: Center of mass of start points: (46+/-8, 140+/-5, 42+/-9) INFO: Center of mass of midpoints: (47+/-4, 105+/-2, 57+/-4) INFO: Center of mass of end points: (65+/-11, 46+/-11, 73+/-12) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28244 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0317225 INFO: Points where local peeks in curvature occur are 46 118 50 (curv = 0.0388051) 48 111 56 (curv = 0.0555527) 48 104 60 (curv = 0.0505194) 47 97 60 (curv = 0.0628071) 60 66 75 (curv = 0.0333833) INFO: Intermediate dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 INFO: Final dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 137 39 48 112 56 49 87 66 61 63 75 71 41 64 INFO: Distances between consecutive points are 31 27 28 27 INFO: Selected control points in test subject's space are 39 76 15 43 63 21 44 49 24 50 36 27 56 26 20 INFO: Distances between consecutive points in test subject's space are 15 14 15 14 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0323469 INFO: Points where local peeks in curvature occur are 49 130 44 (curv = 0.0612801) 48 126 50 (curv = 0.0393571) 48 113 58 (curv = 0.0660797) 44 97 61 (curv = 0.0718496) 45 90 63 (curv = 0.0473725) 56 74 73 (curv = 0.0609765) 60 64 74 (curv = 0.0331985) INFO: Intermediate dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 INFO: Final dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 57 71 73 76 42 76 INFO: Distances between consecutive points are 25 28 31 35 INFO: Selected control points in test subject's space are 43 80 16 43 68 20 41 54 23 48 40 27 58 26 26 INFO: Distances between consecutive points in test subject's space are 13 14 16 17 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330161 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0477155) 47 123 49 (curv = 0.0487921) 45 116 52 (curv = 0.0594563) 46 109 56 (curv = 0.052095) 45 104 58 (curv = 0.0485911) 49 84 64 (curv = 0.0452784) 56 75 72 (curv = 0.0471211) INFO: Intermediate dominant points are 47 145 41 45 116 52 46 96 60 56 75 72 74 43 79 INFO: Final dominant points are 47 145 41 45 116 52 47 89 63 56 75 72 74 43 79 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 122 50 46 97 60 58 71 73 74 43 79 INFO: Distances between consecutive points are 25 27 31 33 INFO: Selected control points in test subject's space are 42 80 16 42 68 19 42 55 22 49 41 27 57 26 28 INFO: Distances between consecutive points in test subject's space are 12 13 16 17 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0297754 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0481203) 47 123 49 (curv = 0.0496145) 45 116 52 (curv = 0.0553555) 46 109 56 (curv = 0.0439455) 47 88 63 (curv = 0.0344062) 56 73 72 (curv = 0.0399798) 59 66 73 (curv = 0.0363352) INFO: Intermediate dominant points are 47 145 41 45 116 52 45 98 59 56 73 72 75 46 75 INFO: Final dominant points are 47 145 41 45 116 52 47 88 63 56 73 72 75 46 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 123 49 45 99 59 56 73 72 75 46 75 INFO: Distances between consecutive points are 23 26 31 33 INFO: Selected control points in test subject's space are 42 80 16 42 69 19 42 56 22 48 42 26 58 28 26 INFO: Distances between consecutive points in test subject's space are 11 13 16 17 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.032913 INFO: Points where local peeks in curvature occur are 49 131 44 (curv = 0.0580746) 48 114 58 (curv = 0.0639599) 44 97 61 (curv = 0.0728882) 46 88 64 (curv = 0.0464374) 56 74 73 (curv = 0.0419059) 59 67 73 (curv = 0.0474898) 66 58 74 (curv = 0.042791) INFO: Intermediate dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 INFO: Final dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 58 70 73 76 42 76 INFO: Distances between consecutive points are 25 28 33 33 INFO: Selected control points in test subject's space are 43 80 16 43 68 20 41 54 23 49 40 27 58 26 26 INFO: Distances between consecutive points in test subject's space are 13 14 17 17 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330215 INFO: Points where local peeks in curvature occur are 47 130 47 (curv = 0.0693609) 49 116 57 (curv = 0.0845046) 48 109 57 (curv = 0.040301) 47 102 59 (curv = 0.0437753) 48 88 65 (curv = 0.053778) 57 67 72 (curv = 0.0353276) INFO: Intermediate dominant points are 41 145 49 49 116 57 48 88 65 57 67 72 61 50 72 INFO: Final dominant points are 41 145 49 49 116 57 48 88 65 57 67 72 61 50 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 145 49 48 122 53 47 99 60 54 76 70 61 50 72 INFO: Distances between consecutive points are 24 24 26 27 INFO: Selected control points in test subject's space are 39 80 20 43 68 20 43 56 22 47 43 26 50 30 25 INFO: Distances between consecutive points in test subject's space are 13 12 14 13 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0267388 INFO: Points where local peeks in curvature occur are 47 129 47 (curv = 0.0624221) 49 118 56 (curv = 0.0769472) 48 106 59 (curv = 0.0335264) 48 89 65 (curv = 0.0476719) 55 73 71 (curv = 0.0312977) INFO: Intermediate dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Final dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 40 145 49 48 121 53 48 98 62 54 74 71 63 51 72 INFO: Distances between consecutive points are 26 25 26 25 INFO: Selected control points in test subject's space are 39 80 20 43 67 20 43 55 23 47 42 26 51 30 25 INFO: Distances between consecutive points in test subject's space are 14 12 14 13 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0378734 INFO: Points where local peeks in curvature occur are 45 110 56 (curv = 0.0393051) 47 86 64 (curv = 0.0499122) 55 74 72 (curv = 0.0611631) 58 65 72 (curv = 0.0564798) 66 52 74 (curv = 0.195512) INFO: Intermediate dominant points are 43 135 37 45 110 56 46 87 63 55 74 72 61 51 62 INFO: Final dominant points are 43 135 37 45 110 56 47 85 64 55 74 72 61 51 62 WARN: Defaulting to equidistant control points INFO: Selected control points are 43 135 37 45 113 55 46 90 62 57 66 72 61 51 62 INFO: Distances between consecutive points are 28 24 28 18 INFO: Selected control points in test subject's space are 40 76 13 42 63 21 42 51 23 48 38 26 50 31 20 INFO: Distances between consecutive points in test subject's space are 15 12 15 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0274305 INFO: Points where local peeks in curvature occur are 46 129 47 (curv = 0.0683541) 49 117 56 (curv = 0.0800283) 48 107 59 (curv = 0.0379104) 48 89 65 (curv = 0.0367021) 49 85 67 (curv = 0.032281) INFO: Intermediate dominant points are 40 145 49 49 117 56 48 89 65 54 74 71 61 50 72 INFO: Final dominant points are 40 145 49 49 117 56 48 89 65 58 62 73 61 50 72 INFO: Selected control points are 40 145 49 49 117 54 48 89 66 58 63 73 61 50 72 INFO: Distances between consecutive points are 30 30 29 13 INFO: Selected control points in test subject's space are 39 80 20 44 65 21 43 50 25 49 36 26 50 30 25 INFO: Distances between consecutive points in test subject's space are 16 16 15 6 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 20.281 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 111 streamlines for straying off mask INFO: Rejected 28 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5155 total streamlines (min/mean/max length: 8/57/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3626 non-truncated streamlines (min/mean/max length: 8/57/101) INFO: Center of mass of start points: (128+/-7, 144+/-4, 41+/-5) INFO: Center of mass of midpoints: (125+/-2, 126+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-16, 58+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 22818 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 68 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0689837 INFO: Points where local peeks in curvature occur are 126 124 54 (curv = 0.148395) 124 130 60 (curv = 0.100467) 109 153 61 (curv = 0.0751884) INFO: Intermediate dominant points are 125 145 40 126 124 54 123 133 61 109 153 61 107 166 56 INFO: Final dominant points are 125 145 40 126 124 54 114 144 59 109 153 61 107 166 56 INFO: Selected control points are 125 145 40 128 125 53 115 144 61 109 152 60 107 166 56 INFO: Distances between consecutive points are 24 24 10 15 INFO: Selected control points in test subject's space are 82 81 15 83 70 20 77 79 25 73 83 25 72 91 24 INFO: Distances between consecutive points in test subject's space are 12 12 6 8 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 35.597 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 333 streamlines for straying off mask INFO: Rejected 112 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6476 total streamlines (min/mean/max length: 8/61/107) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4924 non-truncated streamlines (min/mean/max length: 8/61/107) INFO: Center of mass of start points: (53+/-6, 145+/-4, 41+/-6) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 24349 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0634605 INFO: Points where local peeks in curvature occur are 52 132 46 (curv = 0.0872989) 55 129 54 (curv = 0.165012) 61 137 60 (curv = 0.0656823) 73 151 61 (curv = 0.0884418) INFO: Intermediate dominant points are 50 147 43 55 129 54 64 139 59 73 151 61 77 176 55 INFO: Final dominant points are 50 147 43 55 129 54 67 141 60 73 151 61 77 176 55 INFO: Selected control points are 50 147 43 55 128 52 66 143 61 73 151 60 77 176 55 INFO: Distances between consecutive points are 22 21 11 26 INFO: Selected control points in test subject's space are 44 81 17 46 71 20 52 78 26 55 82 26 57 96 25 INFO: Distances between consecutive points in test subject's space are 11 11 5 14 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 52.414 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 746 streamlines for straying off mask INFO: Rejected 236 streamlines for reversing direction INFO: Rejected 148 streamlines as length outliers INFO: Have 8645 total streamlines (min/mean/max length: 87/132/160) Processing pathway 7 of 18... Matching streamline ends INFO: Have 6398 non-truncated streamlines (min/mean/max length: 87/133/161) INFO: Center of mass of start points: (102+/-6, 38+/-9, 99+/-16) INFO: Center of mass of midpoints: (90+/-3, 89+/-4, 83+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-9, 99+/-17) INFO: Split streamlines into 35 segments Computing path histograms INFO: Total streamline volume is 68450 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.049112 INFO: Points where local peeks in curvature occur are 111 49 87 (curv = 0.107178) 118 64 87 (curv = 0.111705) 89 91 83 (curv = 0.0608033) 83 90 83 (curv = 0.0511514) 62 66 87 (curv = 0.112736) 68 52 86 (curv = 0.0776407) 71 47 89 (curv = 0.0644977) INFO: Intermediate dominant points are 105 42 106 118 64 87 112 77 84 89 91 83 62 66 87 71 47 89 77 39 110 INFO: Final dominant points are 105 42 106 118 64 87 101 88 83 89 91 83 62 66 87 71 47 89 77 39 110 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 106 113 52 87 112 76 84 90 91 83 67 76 86 68 52 86 77 39 110 INFO: Distances between consecutive points are 23 24 27 28 24 29 INFO: Selected control points in test subject's space are 73 24 41 77 30 32 76 43 32 65 50 33 53 42 33 54 30 32 59 22 43 INFO: Distances between consecutive points in test subject's space are 12 13 13 14 12 14 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0489095 INFO: Points where local peeks in curvature occur are 110 43 95 (curv = 0.0768584) 112 50 86 (curv = 0.106706) 118 64 85 (curv = 0.110581) 107 84 82 (curv = 0.0551333) 88 91 83 (curv = 0.049169) 79 89 83 (curv = 0.0694687) 63 66 87 (curv = 0.100722) 69 52 87 (curv = 0.0718068) INFO: Intermediate dominant points are 106 41 111 112 50 86 118 64 85 79 89 83 63 66 87 71 50 87 78 39 111 INFO: Final dominant points are 106 41 111 112 50 86 118 64 85 79 89 83 63 66 87 76 42 97 78 39 111 INFO: Selected control points are 106 41 111 111 48 87 119 69 85 81 91 83 63 64 86 76 42 94 78 39 111 INFO: Distances between consecutive points are 25 23 44 33 27 17 INFO: Selected control points in test subject's space are 74 23 43 76 28 31 80 39 32 60 50 33 51 36 33 58 24 35 59 22 43 INFO: Distances between consecutive points in test subject's space are 13 12 23 17 14 8 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 166.758 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 895 streamlines for straying off mask INFO: Rejected 406 streamlines for reversing direction INFO: Rejected 57 streamlines as length outliers INFO: Have 26269 total streamlines (min/mean/max length: 49/91/121) Processing pathway 8 of 18... Matching streamline ends INFO: Have 17296 non-truncated streamlines (min/mean/max length: 52/90/123) INFO: Center of mass of start points: (103+/-5, 187+/-6, 75+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 76+/-12) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 69800 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0521372 INFO: Points where local peeks in curvature occur are 108 166 74 (curv = 0.0525738) 103 155 76 (curv = 0.06521) 92 149 77 (curv = 0.0986181) 82 151 75 (curv = 0.0545684) 76 156 73 (curv = 0.0612074) 73 177 70 (curv = 0.0817821) INFO: Intermediate dominant points are 106 186 79 108 166 74 92 149 77 73 177 70 75 190 76 INFO: Final dominant points are 106 186 79 108 166 74 92 149 77 73 177 70 75 190 76 INFO: Selected control points are 106 186 79 109 167 73 89 148 77 71 175 70 75 190 76 INFO: Distances between consecutive points are 20 28 33 17 INFO: Selected control points in test subject's space are 72 99 37 73 90 33 64 80 34 54 94 32 56 101 36 INFO: Distances between consecutive points in test subject's space are 10 13 17 8 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 1039.65 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.atr_PP.bbr.trk INFO: Rejected 136 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 52 streamlines as length outliers INFO: Have 13385 total streamlines (min/mean/max length: 30/61/94) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4823 non-truncated streamlines (min/mean/max length: 37/69/92) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-6) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 44160 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0492409 INFO: Points where local peeks in curvature occur are 110 177 72 (curv = 0.092235) 114 169 75 (curv = 0.141218) 111 159 74 (curv = 0.054827) 110 142 79 (curv = 0.0746263) INFO: Intermediate dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Final dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Selected control points are 107 186 78 113 169 73 111 152 77 109 142 78 98 116 78 INFO: Distances between consecutive points are 19 18 10 28 INFO: Selected control points in test subject's space are 72 99 37 75 91 33 75 82 34 74 77 34 68 64 32 INFO: Distances between consecutive points in test subject's space are 9 9 5 14 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 211.816 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 125 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 36 streamlines as length outliers INFO: Have 11832 total streamlines (min/mean/max length: 31/64/93) Processing pathway 10 of 18... Matching streamline ends INFO: Have 4716 non-truncated streamlines (min/mean/max length: 41/71/93) INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5) INFO: Center of mass of end points: (82+/-2, 115+/-3, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 39786 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.050808 INFO: Points where local peeks in curvature occur are 72 178 81 (curv = 0.0623071) 68 165 78 (curv = 0.120283) 70 156 77 (curv = 0.110688) 69 145 82 (curv = 0.0626308) 69 141 82 (curv = 0.0675945) 78 126 80 (curv = 0.0713342) INFO: Intermediate dominant points are 71 192 90 68 165 78 70 154 78 69 141 82 80 116 81 INFO: Final dominant points are 71 192 90 68 165 78 69 151 79 69 141 82 80 116 81 INFO: Selected control points are 71 192 90 70 165 77 69 151 80 70 141 82 80 116 81 INFO: Distances between consecutive points are 30 14 10 27 INFO: Selected control points in test subject's space are 54 101 44 54 88 35 53 81 36 54 76 36 59 63 34 INFO: Distances between consecutive points in test subject's space are 16 7 5 14 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 152.825 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ccg_PP.bbr.trk INFO: Rejected 17 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 1 streamlines as length outliers INFO: Have 5260 total streamlines (min/mean/max length: 25/68/135) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1466 non-truncated streamlines (min/mean/max length: 55/86/135) INFO: Center of mass of start points: (99+/-4, 80+/-7, 103+/-7) INFO: Center of mass of midpoints: (96+/-2, 124+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 20084 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0238637 INFO: Points where local peeks in curvature occur are 100 90 103 (curv = 0.0265804) 96 102 105 (curv = 0.0496757) 96 110 106 (curv = 0.0255031) 97 117 107 (curv = 0.0434525) 97 129 105 (curv = 0.0359116) 97 144 99 (curv = 0.0303995) 96 150 95 (curv = 0.0341667) INFO: Intermediate dominant points are 101 74 96 96 102 105 97 129 105 96 150 95 97 164 78 INFO: Final dominant points are 101 74 96 96 102 105 97 129 105 96 150 95 97 164 78 INFO: Selected control points are 101 74 96 97 103 106 97 128 105 97 150 96 97 164 78 INFO: Distances between consecutive points are 31 25 24 23 INFO: Selected control points in test subject's space are 71 41 38 68 55 45 68 68 46 68 80 43 67 88 35 INFO: Distances between consecutive points in test subject's space are 16 13 12 11 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 40.151 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ccg_PP.bbr.trk INFO: Rejected 40 streamlines for straying off mask INFO: Rejected 8 streamlines for reversing direction INFO: Rejected 44 streamlines as length outliers INFO: Have 4330 total streamlines (min/mean/max length: 30/66/116) Processing pathway 12 of 18... Matching streamline ends INFO: Have 928 non-truncated streamlines (min/mean/max length: 56/83/119) INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 125+/-2, 106+/-2) INFO: Center of mass of end points: (83+/-4, 160+/-6, 89+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18942 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0230908 INFO: Points where local peeks in curvature occur are 80 91 104 (curv = 0.0447291) 81 106 107 (curv = 0.0271521) 82 117 107 (curv = 0.0414315) 82 132 103 (curv = 0.0282386) 83 139 99 (curv = 0.0296175) INFO: Intermediate dominant points are 81 77 93 80 91 104 82 117 107 83 139 99 87 156 90 INFO: Final dominant points are 81 77 93 80 91 104 82 117 107 83 139 99 87 156 90 INFO: Selected control points are 81 77 93 80 92 105 82 117 107 82 138 99 87 156 90 INFO: Distances between consecutive points are 19 25 22 21 INFO: Selected control points in test subject's space are 60 42 37 60 49 44 61 62 47 60 73 44 62 83 41 INFO: Distances between consecutive points in test subject's space are 10 13 11 11 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 26.514 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cab_PP.bbr.trk INFO: Rejected 11 streamlines for straying off mask INFO: Rejected 63 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4187 total streamlines (min/mean/max length: 2/45/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1335 non-truncated streamlines (min/mean/max length: 17/53/89) INFO: Center of mass of start points: (109+/-6, 81+/-12, 75+/-13) INFO: Center of mass of midpoints: (111+/-2, 99+/-4, 58+/-5) INFO: Center of mass of end points: (115+/-5, 122+/-13, 42+/-11) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 18137 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0313147 INFO: Points where local peeks in curvature occur are 103 83 75 (curv = 0.0437025) 110 93 60 (curv = 0.0374356) 114 113 42 (curv = 0.0822433) INFO: Intermediate dominant points are 103 75 85 110 93 60 114 113 42 116 127 39 INFO: Final dominant points are 103 75 85 110 93 60 114 113 42 116 127 39 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 75 85 108 89 67 112 106 47 116 127 39 INFO: Distances between consecutive points are 23 27 23 INFO: Selected control points in test subject's space are 71 42 32 74 51 24 75 61 16 77 72 13 INFO: Distances between consecutive points in test subject's space are 12 13 12 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0243762 INFO: Points where local peeks in curvature occur are 116 113 45 (curv = 0.0532996) INFO: Intermediate dominant points are 105 80 76 110 97 60 116 113 45 116 132 33 INFO: Final dominant points are 105 80 76 113 104 53 116 113 45 116 132 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 80 76 110 97 60 116 114 44 116 132 33 INFO: Distances between consecutive points are 24 24 21 INFO: Selected control points in test subject's space are 72 45 28 75 55 21 77 65 15 77 75 10 INFO: Distances between consecutive points in test subject's space are 13 12 11 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 56 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0249391 INFO: Points where local peeks in curvature occur are 107 91 67 (curv = 0.0410954) 116 116 43 (curv = 0.049922) INFO: Intermediate dominant points are 107 80 75 107 91 67 116 116 43 117 131 33 INFO: Final dominant points are 107 80 75 107 91 67 116 116 43 117 131 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 80 75 109 97 61 116 114 44 117 131 33 INFO: Distances between consecutive points are 22 25 20 INFO: Selected control points in test subject's space are 73 45 28 74 55 22 77 65 15 78 75 10 INFO: Distances between consecutive points in test subject's space are 12 13 11 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 65 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0434333 INFO: Points where local peeks in curvature occur are 105 86 73 (curv = 0.0715313) 120 117 37 (curv = 0.145477) INFO: Intermediate dominant points are 105 75 88 105 86 73 120 117 37 117 131 36 INFO: Final dominant points are 105 75 88 105 86 73 120 117 37 117 131 36 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 105 75 88 110 95 64 118 109 43 117 131 36 INFO: Distances between consecutive points are 32 26 23 INFO: Selected control points in test subject's space are 72 42 34 75 54 23 78 63 14 78 74 12 INFO: Distances between consecutive points in test subject's space are 17 13 11 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0275492 INFO: Points where local peeks in curvature occur are 107 91 67 (curv = 0.0408923) 109 98 61 (curv = 0.0283712) 113 109 47 (curv = 0.0376695) 116 118 42 (curv = 0.0559133) INFO: Intermediate dominant points are 107 80 75 107 91 67 116 118 42 117 130 33 INFO: Final dominant points are 107 80 75 107 91 67 116 118 42 117 130 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 80 75 109 98 61 115 114 44 117 130 33 INFO: Distances between consecutive points are 23 24 20 INFO: Selected control points in test subject's space are 73 45 28 74 56 22 77 65 15 78 74 10 INFO: Distances between consecutive points in test subject's space are 13 12 10 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 57 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.02502 INFO: Points where local peeks in curvature occur are 108 90 67 (curv = 0.0360269) 114 110 47 (curv = 0.0408157) 116 118 42 (curv = 0.0600972) INFO: Intermediate dominant points are 108 80 75 111 99 60 116 118 42 117 130 33 INFO: Final dominant points are 108 80 75 113 109 49 116 118 42 117 130 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 108 80 75 110 98 61 114 113 45 117 130 33 INFO: Distances between consecutive points are 23 22 21 INFO: Selected control points in test subject's space are 74 46 28 75 56 22 76 64 15 78 74 10 INFO: Distances between consecutive points in test subject's space are 12 11 11 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 59 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0269648 INFO: Points where local peeks in curvature occur are 105 88 69 (curv = 0.04193) 111 97 59 (curv = 0.0364497) 114 117 42 (curv = 0.0607358) 113 123 40 (curv = 0.0383984) INFO: Intermediate dominant points are 103 77 77 105 88 69 114 117 42 113 134 36 INFO: Final dominant points are 103 77 77 105 88 69 114 117 42 113 134 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 77 77 110 95 61 114 114 44 113 134 36 INFO: Distances between consecutive points are 25 26 22 INFO: Selected control points in test subject's space are 71 44 29 75 54 22 76 65 15 76 76 12 INFO: Distances between consecutive points in test subject's space are 13 13 11 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 63 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0382436 INFO: Points where local peeks in curvature occur are 104 90 66 (curv = 0.054422) 114 114 43 (curv = 0.0637031) INFO: Intermediate dominant points are 110 76 78 104 90 66 114 114 43 111 129 36 INFO: Final dominant points are 110 76 78 104 90 66 114 114 43 111 129 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 110 76 78 108 95 60 114 113 44 111 129 36 INFO: Distances between consecutive points are 26 25 18 INFO: Selected control points in test subject's space are 75 43 29 74 54 21 76 65 15 75 73 12 INFO: Distances between consecutive points in test subject's space are 14 13 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 52 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0241599 INFO: Points where local peeks in curvature occur are 112 100 56 (curv = 0.0282194) 112 106 51 (curv = 0.0284236) 115 115 44 (curv = 0.0461041) 114 120 41 (curv = 0.0308676) INFO: Intermediate dominant points are 110 79 74 111 96 60 115 115 44 116 131 37 INFO: Final dominant points are 110 79 74 112 106 51 115 115 44 116 131 37 INFO: Selected control points are 110 79 74 111 105 51 111 111 43 116 131 37 INFO: Distances between consecutive points are 35 10 21 INFO: Selected control points in test subject's space are 75 45 27 75 60 17 75 64 14 77 74 12 INFO: Distances between consecutive points in test subject's space are 18 5 10 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 25.904 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cab_PP.bbr.trk INFO: Rejected 156 streamlines for straying off mask INFO: Rejected 65 streamlines for reversing direction INFO: Rejected 14 streamlines as length outliers INFO: Have 4001 total streamlines (min/mean/max length: 13/44/90) Processing pathway 14 of 18... Matching streamline ends INFO: Have 1177 non-truncated streamlines (min/mean/max length: 26/54/92) INFO: Center of mass of start points: (71+/-5, 80+/-7, 77+/-8) INFO: Center of mass of midpoints: (67+/-2, 101+/-2, 56+/-2) INFO: Center of mass of end points: (63+/-4, 127+/-7, 38+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 16752 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.026277 INFO: Points where local peeks in curvature occur are 65 108 46 (curv = 0.0700887) INFO: Intermediate dominant points are 74 76 83 68 96 63 65 108 46 66 131 38 INFO: Final dominant points are 74 76 83 67 100 57 65 108 46 66 131 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 74 76 83 68 95 64 65 109 44 66 131 38 INFO: Distances between consecutive points are 28 25 23 INFO: Selected control points in test subject's space are 57 43 32 53 53 24 52 62 15 52 74 13 INFO: Distances between consecutive points in test subject's space are 13 13 12 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.025625 INFO: Points where local peeks in curvature occur are 68 98 61 (curv = 0.035358) 66 110 44 (curv = 0.0492048) INFO: Intermediate dominant points are 74 76 83 68 98 61 66 110 44 66 130 38 INFO: Final dominant points are 74 76 83 68 98 61 66 110 44 66 130 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 74 76 83 69 93 66 66 108 45 66 130 38 INFO: Distances between consecutive points are 25 26 23 INFO: Selected control points in test subject's space are 57 43 32 54 52 25 52 61 15 52 73 13 INFO: Distances between consecutive points in test subject's space are 12 14 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.034256 INFO: Points where local peeks in curvature occur are 68 100 58 (curv = 0.0373687) 64 108 45 (curv = 0.052622) 63 114 41 (curv = 0.081056) 63 121 41 (curv = 0.0509577) INFO: Intermediate dominant points are 75 80 82 69 98 61 63 114 41 62 132 37 INFO: Final dominant points are 75 80 82 66 104 50 63 114 41 62 132 37 INFO: Selected control points are 75 80 82 65 104 50 62 110 41 62 132 37 INFO: Distances between consecutive points are 41 11 22 INFO: Selected control points in test subject's space are 57 45 32 52 59 17 50 63 13 50 74 13 INFO: Distances between consecutive points in test subject's space are 21 6 11 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 22.708 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slfp_PP.bbr.trk INFO: Rejected 235 streamlines for straying off mask INFO: Rejected 695 streamlines for reversing direction INFO: Rejected 24 streamlines as length outliers INFO: Have 9313 total streamlines (min/mean/max length: 20/59/106) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3894 non-truncated streamlines (min/mean/max length: 26/65/106) INFO: Center of mass of start points: (145+/-6, 127+/-5, 98+/-12) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-4) INFO: Center of mass of end points: (141+/-10, 84+/-10, 111+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 50739 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.05886 INFO: Points where local peeks in curvature occur are 129 115 99 (curv = 0.0903529) 130 86 103 (curv = 0.141374) INFO: Intermediate dominant points are 150 131 97 129 115 99 129 102 102 130 86 103 150 86 113 INFO: Final dominant points are 150 131 97 129 115 99 128 95 103 130 86 103 150 86 113 INFO: Selected control points are 150 131 97 129 115 98 129 96 103 130 86 104 150 86 113 INFO: Distances between consecutive points are 26 20 10 22 INFO: Selected control points in test subject's space are 95 70 42 84 62 41 84 52 43 85 47 42 95 46 47 INFO: Distances between consecutive points in test subject's space are 14 10 5 11 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 99.446 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slfp_PP.bbr.trk INFO: Rejected 786 streamlines for straying off mask INFO: Rejected 413 streamlines for reversing direction INFO: Rejected 69 streamlines as length outliers INFO: Have 14354 total streamlines (min/mean/max length: 18/63/98) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6759 non-truncated streamlines (min/mean/max length: 27/69/101) INFO: Center of mass of start points: (34+/-8, 130+/-6, 97+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 103+/-3) INFO: Center of mass of end points: (40+/-9, 81+/-10, 113+/-11) New invocation of trac-all Wed Apr 24 22:34:39 EDT 2013 /autofs/space/pluto_001/users/ayendiki/tract /usr/local/freesurfer/dev/bin/trac-all -bedp -c dmrirc.tutorial -no-isrunning Subject elmo.2008 SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/dev Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/dev build-stamp.txt: freesurfer-x86_64-unknown-linux-gnu-dev5-20130424 ayendiki launchpad Linux launchpad 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 8192 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877832 14727072 18150760 0 619928 9191980 -/+ buffers/cache: 4915164 27962668 Swap: 67108848 22796 67086052 ######################################## Program versions: $Id: trac-all,v 1.47 2013/02/23 01:59:42 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:39-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ $Id: mri_cvs_register,v 1.45 2013/02/07 22:48:48 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:39-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:39-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:39-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:39-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 64731 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0597307 INFO: Points where local peeks in curvature occur are 50 119 100 (curv = 0.116181) 51 90 103 (curv = 0.0712553) 53 81 102 (curv = 0.194926) INFO: Intermediate dominant points are 33 127 97 50 119 100 52 99 105 53 81 102 39 73 122 INFO: Final dominant points are 33 127 97 50 119 100 51 90 103 53 81 102 39 73 122 INFO: Selected control points are 33 127 97 50 118 101 51 91 105 53 80 102 39 73 122 INFO: Distances between consecutive points are 20 27 12 25 INFO: Selected control points in test subject's space are 36 67 43 44 62 44 45 48 44 46 43 42 39 38 51 INFO: Distances between consecutive points in test subject's space are 9 14 5 12 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 277.01 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slft_PP.bbr.trk INFO: Rejected 400 streamlines for straying off mask INFO: Rejected 69 streamlines for reversing direction INFO: Rejected 42 streamlines as length outliers INFO: Have 7383 total streamlines (min/mean/max length: 34/90/136) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4535 non-truncated streamlines (min/mean/max length: 34/92/139) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (126+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-7, 84+/-13, 65+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 46208 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0494031 INFO: Points where local peeks in curvature occur are 130 118 98 (curv = 0.112622) 125 87 100 (curv = 0.0939046) 128 81 94 (curv = 0.0846298) 135 81 74 (curv = 0.072545) INFO: Intermediate dominant points are 148 133 85 130 118 98 125 87 100 135 81 74 150 93 57 INFO: Final dominant points are 148 133 85 130 118 98 125 87 100 135 81 74 150 93 57 INFO: Selected control points are 148 133 85 131 117 99 127 87 100 133 82 74 150 93 57 INFO: Distances between consecutive points are 27 30 27 26 INFO: Selected control points in test subject's space are 94 72 36 85 63 42 84 48 40 86 47 27 95 54 19 INFO: Distances between consecutive points in test subject's space are 14 15 13 14 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 102.338 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slft_PP.bbr.trk INFO: Rejected 64 streamlines for straying off mask INFO: Rejected 16 streamlines for reversing direction INFO: Rejected 19 streamlines as length outliers INFO: Have 3041 total streamlines (min/mean/max length: 31/90/141) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1645 non-truncated streamlines (min/mean/max length: 55/92/143) INFO: Center of mass of start points: (40+/-9, 135+/-8, 96+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-9, 71+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 32030 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0544081 INFO: Points where local peeks in curvature occur are 56 126 95 (curv = 0.115336) 58 99 102 (curv = 0.108833) 52 87 98 (curv = 0.0917009) 51 82 87 (curv = 0.0588861) INFO: Intermediate dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 INFO: Final dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 42 138 83 54 121 98 57 97 102 50 81 86 29 83 70 INFO: Distances between consecutive points are 26 25 24 26 INFO: Selected control points in test subject's space are 40 74 37 46 64 43 48 52 43 45 45 34 34 47 26 INFO: Distances between consecutive points in test subject's space are 13 12 12 14 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 110 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.045208 INFO: Points where local peeks in curvature occur are 53 130 92 (curv = 0.0955001) 52 119 97 (curv = 0.0509654) 54 105 102 (curv = 0.0588573) 52 79 91 (curv = 0.099188) 48 78 80 (curv = 0.0708915) INFO: Intermediate dominant points are 31 142 82 53 130 92 54 105 102 52 79 91 26 77 70 INFO: Final dominant points are 31 142 82 53 130 92 54 105 102 52 79 91 26 77 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 142 82 53 126 93 54 98 101 50 78 83 26 77 70 INFO: Distances between consecutive points are 29 29 27 27 INFO: Selected control points in test subject's space are 34 76 37 46 67 41 47 52 43 45 43 32 32 43 26 INFO: Distances between consecutive points in test subject's space are 16 15 14 14 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0541027 INFO: Points where local peeks in curvature occur are 54 114 102 (curv = 0.111201) 57 97 104 (curv = 0.0718246) 55 86 101 (curv = 0.0879416) 54 82 96 (curv = 0.0682463) 51 82 83 (curv = 0.0671557) INFO: Intermediate dominant points are 31 131 99 54 114 102 55 86 101 51 82 83 34 79 75 INFO: Final dominant points are 31 131 99 54 114 102 55 86 101 51 82 83 34 79 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 101 57 93 103 51 81 86 34 79 75 INFO: Distances between consecutive points are 27 23 22 20 INFO: Selected control points in test subject's space are 35 69 44 46 61 44 48 50 43 45 45 34 36 44 29 INFO: Distances between consecutive points in test subject's space are 14 11 11 10 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0543583 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0612415) 56 96 104 (curv = 0.0706371) 56 91 103 (curv = 0.060168) 54 85 101 (curv = 0.0837136) 53 80 91 (curv = 0.0613242) INFO: Intermediate dominant points are 33 129 101 53 115 102 54 85 101 52 80 83 33 75 75 INFO: Final dominant points are 33 129 101 53 115 102 54 85 101 44 82 73 33 75 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 114 102 56 92 103 52 80 84 33 75 75 INFO: Distances between consecutive points are 25 22 23 22 INFO: Selected control points in test subject's space are 36 68 45 46 60 44 48 49 43 46 44 33 36 42 28 INFO: Distances between consecutive points in test subject's space are 13 11 11 11 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0528474 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.104998) 57 93 103 (curv = 0.0841141) 53 82 95 (curv = 0.0849468) 47 82 76 (curv = 0.0588867) INFO: Intermediate dominant points are 31 128 99 52 117 101 57 93 103 53 82 95 34 79 74 INFO: Final dominant points are 31 128 99 52 117 101 57 93 103 53 82 95 34 79 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 53 116 101 57 93 103 51 81 86 34 79 74 INFO: Distances between consecutive points are 25 23 22 21 INFO: Selected control points in test subject's space are 35 68 44 46 61 44 48 50 43 45 45 34 36 44 28 INFO: Distances between consecutive points in test subject's space are 13 11 11 11 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0509719 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.106241) 56 90 103 (curv = 0.0762605) 53 80 91 (curv = 0.051943) 53 80 85 (curv = 0.0567582) 49 80 78 (curv = 0.0531748) INFO: Intermediate dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 INFO: Final dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 54 114 102 57 91 103 52 80 84 33 76 75 INFO: Distances between consecutive points are 26 23 23 21 INFO: Selected control points in test subject's space are 36 68 45 46 60 44 48 49 43 46 44 33 36 43 28 INFO: Distances between consecutive points in test subject's space are 13 11 11 11 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0523631 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.112716) 57 95 104 (curv = 0.0676929) 55 87 102 (curv = 0.0762004) 53 81 94 (curv = 0.0786657) 52 80 85 (curv = 0.0559462) INFO: Intermediate dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 INFO: Final dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 102 57 92 103 52 80 85 34 78 74 INFO: Distances between consecutive points are 27 24 22 21 INFO: Selected control points in test subject's space are 35 69 44 46 61 44 48 49 43 46 44 33 36 44 28 INFO: Distances between consecutive points in test subject's space are 14 12 11 11 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0508087 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.0873428) 57 95 104 (curv = 0.0760012) 55 85 101 (curv = 0.103893) 53 80 91 (curv = 0.0543973) 52 80 85 (curv = 0.0536442) INFO: Intermediate dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 INFO: Final dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 52 116 101 57 94 104 53 80 87 34 78 74 INFO: Distances between consecutive points are 24 23 22 23 INFO: Selected control points in test subject's space are 35 68 44 45 61 44 48 50 44 46 44 34 36 44 28 INFO: Distances between consecutive points in test subject's space are 12 11 12 12 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0511504 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.0883091) 57 95 104 (curv = 0.0762743) 55 85 101 (curv = 0.077328) 52 80 83 (curv = 0.0726445) INFO: Intermediate dominant points are 31 128 99 53 115 102 55 85 101 52 80 83 34 78 74 INFO: Final dominant points are 31 128 99 53 115 102 55 85 101 52 80 83 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 52 116 101 57 94 104 52 80 86 34 78 74 INFO: Distances between consecutive points are 24 23 23 22 INFO: Selected control points in test subject's space are 35 68 44 45 61 44 48 50 44 46 44 34 36 44 28 INFO: Distances between consecutive points in test subject's space are 12 11 12 12 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0545286 INFO: Points where local peeks in curvature occur are 54 114 102 (curv = 0.0996838) 56 97 104 (curv = 0.0731049) 54 84 98 (curv = 0.0976728) INFO: Intermediate dominant points are 31 128 99 54 114 102 54 84 98 51 82 86 34 79 74 INFO: Final dominant points are 31 128 99 54 114 102 54 84 98 46 83 75 34 79 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 53 116 101 57 94 103 51 82 86 34 79 74 INFO: Distances between consecutive points are 25 22 22 21 INFO: Selected control points in test subject's space are 35 68 44 46 61 44 48 50 43 45 45 34 36 44 28 INFO: Distances between consecutive points in test subject's space are 13 11 11 11 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0522221 INFO: Points where local peeks in curvature occur are 51 118 101 (curv = 0.08957) 53 106 104 (curv = 0.0533716) 56 95 104 (curv = 0.0627361) 56 91 103 (curv = 0.0658541) 54 82 96 (curv = 0.0734739) 49 81 79 (curv = 0.054201) INFO: Intermediate dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 INFO: Final dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 115 102 56 93 103 52 80 87 34 78 74 INFO: Distances between consecutive points are 24 22 21 22 INFO: Selected control points in test subject's space are 36 68 45 46 61 44 48 50 43 46 44 34 36 44 28 INFO: Distances between consecutive points in test subject's space are 12 11 11 12 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0539997 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0632939) 56 94 104 (curv = 0.0741206) 55 87 102 (curv = 0.0816165) 54 81 93 (curv = 0.0717009) 51 80 82 (curv = 0.0637529) INFO: Intermediate dominant points are 33 129 101 53 115 102 55 87 102 51 80 82 35 78 74 INFO: Final dominant points are 33 129 101 53 115 102 55 87 102 51 80 82 35 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 115 102 56 94 104 53 80 90 35 78 74 INFO: Distances between consecutive points are 24 21 20 24 INFO: Selected control points in test subject's space are 36 68 45 46 61 44 48 50 44 46 44 36 37 44 28 INFO: Distances between consecutive points in test subject's space are 12 11 10 12 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0545474 INFO: Points where local peeks in curvature occur are 53 114 102 (curv = 0.109509) 56 97 104 (curv = 0.0692407) 54 85 100 (curv = 0.0735222) 53 80 87 (curv = 0.0587835) 52 80 84 (curv = 0.0581913) INFO: Intermediate dominant points are 31 131 99 53 114 102 54 85 100 52 80 84 34 78 74 INFO: Final dominant points are 31 131 99 53 114 102 54 85 100 52 80 84 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 52 116 101 56 95 104 53 80 88 34 78 74 INFO: Distances between consecutive points are 26 22 22 24 INFO: Selected control points in test subject's space are 35 69 44 45 61 44 48 51 44 46 44 35 36 44 28 INFO: Distances between consecutive points in test subject's space are 13 10 12 12 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0544688 INFO: Points where local peeks in curvature occur are 52 115 101 (curv = 0.106907) 52 106 103 (curv = 0.0588014) 55 95 104 (curv = 0.0687607) 54 87 102 (curv = 0.0658239) 53 81 95 (curv = 0.0721727) INFO: Intermediate dominant points are 31 130 99 52 115 101 55 93 104 53 81 95 35 77 76 INFO: Final dominant points are 31 130 99 52 115 101 55 92 103 53 81 95 35 77 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 130 99 52 115 101 55 93 104 52 80 85 35 77 76 INFO: Distances between consecutive points are 26 22 23 19 INFO: Selected control points in test subject's space are 35 69 44 45 61 44 47 50 44 46 44 33 37 43 29 INFO: Distances between consecutive points in test subject's space are 13 11 13 10 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 80 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0429231 INFO: Points where local peeks in curvature occur are 54 117 105 (curv = 0.0760724) 57 101 104 (curv = 0.0470509) 56 94 102 (curv = 0.0574063) 53 84 90 (curv = 0.0717983) INFO: Intermediate dominant points are 41 129 102 54 117 105 53 84 90 43 82 80 25 78 73 INFO: Final dominant points are 41 129 102 54 117 105 53 84 90 36 82 73 25 78 73 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 129 102 55 112 105 56 92 101 46 82 82 25 78 73 INFO: Distances between consecutive points are 22 20 24 23 INFO: Selected control points in test subject's space are 40 68 45 47 59 46 48 49 42 43 45 32 32 44 28 INFO: Distances between consecutive points in test subject's space are 11 11 12 12 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0514306 INFO: Points where local peeks in curvature occur are 53 116 102 (curv = 0.110716) 54 107 103 (curv = 0.0531532) 57 97 105 (curv = 0.0733923) 57 91 104 (curv = 0.056127) 55 84 101 (curv = 0.0748225) 55 79 92 (curv = 0.0769231) INFO: Intermediate dominant points are 31 128 99 53 116 102 57 93 104 55 79 92 34 77 72 INFO: Final dominant points are 31 128 99 53 116 102 56 87 102 55 79 92 34 77 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 53 116 102 57 93 104 54 79 87 34 77 72 INFO: Distances between consecutive points are 25 23 22 25 INFO: Selected control points in test subject's space are 35 68 44 46 61 44 48 50 44 47 44 34 36 43 27 INFO: Distances between consecutive points in test subject's space are 13 11 12 13 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0510216 INFO: Points where local peeks in curvature occur are 51 120 104 (curv = 0.116041) 54 100 106 (curv = 0.0767535) 53 83 98 (curv = 0.0769925) 50 78 82 (curv = 0.0621276) 48 79 77 (curv = 0.0667317) INFO: Intermediate dominant points are 33 130 109 51 120 104 53 83 98 48 79 77 36 80 67 INFO: Final dominant points are 33 130 109 51 120 104 53 83 98 48 79 77 36 80 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 130 109 52 119 104 54 97 106 52 80 89 36 80 67 INFO: Distances between consecutive points are 23 22 24 27 INFO: Selected control points in test subject's space are 36 68 49 45 63 46 47 51 45 46 44 35 37 45 25 INFO: Distances between consecutive points in test subject's space are 11 12 12 13 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0477251 INFO: Points where local peeks in curvature occur are 52 118 106 (curv = 0.0961347) 53 87 100 (curv = 0.130721) 52 84 87 (curv = 0.0525987) 44 81 75 (curv = 0.080997) INFO: Intermediate dominant points are 32 128 111 52 118 106 53 87 100 44 81 75 28 84 68 INFO: Final dominant points are 32 128 111 52 118 106 53 87 100 44 81 75 28 84 68 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 128 111 53 115 105 54 91 102 49 83 81 28 84 68 INFO: Distances between consecutive points are 25 24 23 25 INFO: Selected control points in test subject's space are 35 67 50 46 61 46 47 49 43 44 46 32 33 47 25 INFO: Distances between consecutive points in test subject's space are 13 12 12 13 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0473018 INFO: Points where local peeks in curvature occur are 52 117 105 (curv = 0.109912) 55 97 104 (curv = 0.0497872) 54 88 100 (curv = 0.119239) 45 81 75 (curv = 0.075494) INFO: Intermediate dominant points are 32 128 111 52 117 105 54 88 100 45 81 75 28 85 67 INFO: Final dominant points are 32 128 111 52 117 105 54 88 100 45 81 75 28 85 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 128 111 53 116 105 54 93 102 50 83 83 28 85 67 INFO: Distances between consecutive points are 25 23 22 27 INFO: Selected control points in test subject's space are 35 67 50 46 61 46 47 50 43 45 46 33 33 48 25 INFO: Distances between consecutive points in test subject's space are 13 11 11 15 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0484529 INFO: Points where local peeks in curvature occur are 53 117 104 (curv = 0.0991243) 54 100 106 (curv = 0.0644789) 53 82 95 (curv = 0.0600171) 50 78 81 (curv = 0.0701388) INFO: Intermediate dominant points are 33 128 108 53 117 104 54 100 106 50 78 81 36 80 67 INFO: Final dominant points are 33 128 108 53 117 104 54 100 106 50 78 81 36 80 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 128 108 53 117 104 54 96 105 52 80 89 36 80 67 INFO: Distances between consecutive points are 23 21 23 27 INFO: Selected control points in test subject's space are 36 67 48 46 62 45 47 51 44 46 44 35 37 45 25 INFO: Distances between consecutive points in test subject's space are 12 11 11 13 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0476213 INFO: Points where local peeks in curvature occur are 51 120 104 (curv = 0.0894124) 54 97 106 (curv = 0.0847248) 53 82 95 (curv = 0.0577837) 50 78 82 (curv = 0.0487929) 47 79 76 (curv = 0.0505488) INFO: Intermediate dominant points are 31 127 109 51 120 104 54 97 106 53 82 95 36 80 67 INFO: Final dominant points are 31 127 109 51 120 104 54 97 106 53 82 95 36 80 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 127 109 52 118 104 54 96 106 52 79 89 36 80 67 INFO: Distances between consecutive points are 23 22 24 27 INFO: Selected control points in test subject's space are 35 66 49 45 62 46 47 51 45 46 43 35 37 45 25 INFO: Distances between consecutive points in test subject's space are 11 11 13 14 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0482718 INFO: Points where local peeks in curvature occur are 53 119 105 (curv = 0.135971) 54 98 106 (curv = 0.0531644) 53 82 96 (curv = 0.0561673) 50 78 82 (curv = 0.0613239) INFO: Intermediate dominant points are 33 129 108 53 119 105 53 82 96 50 78 82 36 80 67 INFO: Final dominant points are 33 129 108 53 119 105 53 82 96 50 78 82 36 80 67 INFO: Selected control points are 33 129 108 52 118 106 53 84 100 50 78 81 36 80 67 INFO: Distances between consecutive points are 22 35 20 20 INFO: Selected control points in test subject's space are 36 67 49 45 62 47 46 45 41 45 43 31 37 45 25 INFO: Distances between consecutive points in test subject's space are 10 18 10 10 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 35.099 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Wed Apr 24 22:40:06 EDT 2013 New invocation of trac-all Thu Apr 25 09:54:03 EDT 2013 /autofs/space/pluto_001/users/ayendiki/tract /usr/local/freesurfer/dev/bin/trac-all -c dmrirc.tutorial -path Subject elmo.2008 SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/dev Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/dev build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20130424 ayendiki launchpad Linux launchpad 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 8192 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877832 14107732 18770100 0 620208 8702316 -/+ buffers/cache: 4785208 28092624 Swap: 67108848 22796 67086052 ######################################## Program versions: $Id: trac-all,v 1.47 2013/02/23 01:59:42 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:03-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ $Id: mri_cvs_register,v 1.45 2013/02/07 22:48:48 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:03-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:03-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:03-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:03-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths ayendiki compute-0-29 Linux compute-0-29 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877836 10886012 21991824 0 186232 1076140 -/+ buffers/cache: 9623640 23254196 Swap: 67108856 130616 66978240 #------------------------------------- /usr/local/freesurfer/dev/bin/trac-paths #------------------------------------- #@# Path reconstruction Thu Apr 25 09:54:40 EDT 2013 rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr /usr/local/freesurfer/dev/bin/dmri_paths --outdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr --dwi /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz --grad /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvecs --bval /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvals --mask /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat --init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_paths --outdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr --dwi /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz --grad /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvecs --bval /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvals --mask /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat --init /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Output directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz Gradients: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvecs B-values: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvals Mask: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dwi.nii.gz Loading mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri.bedpostX Loading b-values from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvals Loading gradients from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/bvecs INFO: Found 10 baseline images (b = 0) out of a total of 70 frames INFO: Found 227061 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading affine registration from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/xfms/diff2mni.bbr.mat Loading segmentation map from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/aparc+aseg.nii.gz Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt Processing pathway 1 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr Done in 191.566 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt Processing pathway 2 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr Done in 183.655 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 3 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr Done in 114.245 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt WARN: Initial end point 50 30 25 is not in end ROI WARN: Replacing with closest point in end ROI (50 30 24) Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 4 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 4 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr Done in 138.98 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 5 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr Done in 131.026 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 6 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 6 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr Done in 118.092 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt Processing pathway 7 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 6 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr Done in 234.27 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 8 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Success after 7 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr Done in 138.888 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 9 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 7 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr Done in 109.607 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 10 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr Done in 119.865 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 11 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr Done in 144.882 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 12 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr Done in 130.27 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt Processing pathway 13 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr Done in 49.39 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt Processing pathway 14 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr Done in 47.691 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 15 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr Done in 125.096 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 16 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 4 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr Done in 116.003 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 17 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr Done in 146.161 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 18 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr Done in 138.586 sec. dmri_paths done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.cst --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.cst --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: lh.cst Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz Done in 1.135 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.cst --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.cst --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: rh.cst Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.698 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.ilf --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.ilf --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: lh.ilf Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.694 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.ilf --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.ilf --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: rh.ilf Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.691 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.unc --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.unc --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: lh.unc Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.7 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.unc --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.unc --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: rh.unc Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.694 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path fmajor --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path fmajor --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: fmajor Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fmajor_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.716 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path fminor --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path fminor --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: fminor Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/fminor_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.692 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.atr --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.atr --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: lh.atr Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.703 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.atr --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.atr --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: rh.atr Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.689 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.ccg --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.ccg --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: lh.ccg Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.69 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.ccg --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.ccg --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: rh.ccg Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.686 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.cab --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.cab --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: lh.cab Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.683 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.cab --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.cab --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: rh.cab Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.686 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.slfp --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.slfp --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: lh.slfp Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.712 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.slfp --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.slfp --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: rh.slfp Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.693 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.slft --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path lh.slft --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: lh.slft Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.707 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.slft --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit --path rh.slft --subj elmo.2008 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dmri/dtifit Pathway name: rh.slft Subject name: elmo.2008 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.709 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_mergepaths --indir /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath --in fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/merged_avg33_mni_bbr.mgz --ctab /usr/local/freesurfer/dev/FreeSurferColorLUT.txt --thresh .2 cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_mergepaths --indir /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath --in fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/merged_avg33_mni_bbr.mgz --ctab /usr/local/freesurfer/dev/FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath Input files: fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz Output file: /space/freesurfer/subjects/diffusion_tutorial/elmo.2008/dpath/merged_avg33_mni_bbr.mgz Color table file: /autofs/cluster/freesurfer/centos6_x86_64/dev/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 18... Threshold: 30 Name: Corpus Callosum Forceps Major Merging volume 2 of 18... Threshold: 22.4 Name: Corpus Callosum Forceps Minor Merging volume 3 of 18... Threshold: 20 Name: Left Anterior Thalamic Radiation Merging volume 4 of 18... Threshold: 38.4 Name: Left Cingulum - Angular Bundle Merging volume 5 of 18... Threshold: 88.8 Name: Left Cingulum - Cingulate Gyrus Merging volume 6 of 18... Threshold: 26.6 Name: Left Corticospinal Tract Merging volume 7 of 18... Threshold: 26.6 Name: Left Inferior Longitudinal Fasciculus Merging volume 8 of 18... Threshold: 22.8 Name: Left Superior Longitudinal Fasciculus - Parietal Merging volume 9 of 18... Threshold: 31.8 Name: Left Superior Longitudinal Fasciculus - Temporal Merging volume 10 of 18... Threshold: 238.4 Name: Left Uncinate Fasciculus Merging volume 11 of 18... Threshold: 24.4 Name: Right Anterior Thalamic Radiation Merging volume 12 of 18... Threshold: 33 Name: Right Cingulum - Angular Bundle Merging volume 13 of 18... Threshold: 88 Name: Right Cingulum - Cingulate Gyrus Merging volume 14 of 18... Threshold: 24.4 Name: Right Corticospinal Tract Merging volume 15 of 18... Threshold: 43.2 Name: Right Inferior Longitudinal Fasciculus Merging volume 16 of 18... Threshold: 24.4 Name: Right Superior Longitudinal Fasciculus - Parietal Merging volume 17 of 18... Threshold: 24.8 Name: Right Superior Longitudinal Fasciculus - Temporal Merging volume 18 of 18... Threshold: 42.2 Name: Right Uncinate Fasciculus Done in 3.622 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Thu Apr 25 10:36:07 EDT 2013 New invocation of trac-all Fri Mar 4 17:01:02 MST 2016 /home/biba1/testing_tracula/diffusion /apps/freesurfer/bin/trac-all -prep -c dmrirc.tutorial Subject elmo.2008 SUBJECTS_DIR /home/biba1/testing_tracula/recons FREESURFER_HOME /apps/freesurfer Actual FREESURFER_HOME /apps/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 biba1 BIBAStation1 Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127629 maxlocks unlimited maxsignal 127629 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16355668 14343244 2012424 0 56340 12872236 -/+ buffers/cache: 1414668 14941000 Swap: 16698364 68 16698296 ######################################## Program versions: $Id: trac-all,v 1.22.2.12 2013/02/23 02:01:02 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/05-00:01:02-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/05-00:01:02-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/05-00:01:03-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/05-00:01:03-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/03/05-00:01:03-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /apps/freesurfer Previous: /usr/local/freesurfer/dev New invocation of trac-preproc biba1 BIBAStation1 Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127629 maxlocks unlimited maxsignal 127629 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16355668 14366520 1989148 0 56348 12892300 -/+ buffers/cache: 1417872 14937796 Swap: 16698364 68 16698296 #------------------------------------- /apps/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Fri Mar 4 17:01:04 MST 2016 mri_convert /home/biba1/testing_tracula/diffusion/elmo.2008/orig/97000-000017-000001.dcm /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz mri_convert /home/biba1/testing_tracula/diffusion/elmo.2008/orig/97000-000017-000001.dcm /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/orig/97000-000017-000001.dcm... Getting Series No INFO: Found 72 files in /home/biba1/testing_tracula/diffusion/elmo.2008/orig INFO: Scanning for Series Number 17 Scanning Directory INFO: found 70 files in series INFO: loading series header info. RunNo = 16 WARNING: Run 1 appears to be truncated Files Found: 70, Files Expected (lRep+1): 120 FileName /home/biba1/testing_tracula/diffusion/elmo.2008/orig/97000-000017-000001.dcm Identification NumarisVer syngo MR B15 ScannerModel TrioTim PatientName CON04_07172008 Date and time StudyDate 20080717 StudyTime 082602.097000 SeriesTime 091538.382000 AcqTime 091309.512500 Acquisition parameters PulseSeq ep_b0#1 Protocol DTI PhEncDir COL EchoNo 1 FlipAngle 90 EchoTime 84 InversionTime -1 RepetitionTime 9850 PhEncFOV 237 ReadoutFOV 237 Image information RunNo 16 SeriesNo 17 ImageNo 1 NImageRows 1152 NImageCols 1152 NFrames 70 SliceArraylSize 79 IsMosaic 1 ImgPos 1042.7820 1078.5270 242.5410 VolRes 1.8516 1.8516 1.8500 VolDim 128 128 79 Vc -0.9997 -0.0232 -0.0095 Vr 0.0249 -0.9576 -0.2870 Vs -0.0024 -0.2872 0.9579 VolCenter 0.0000 0.0000 0.0000 TransferSyntaxUID 1.2.840.10008.1.2.1 INFO: sorting. INFO: (128 128 79), nframes = 70, ismosaic=1 Could not parse NUMARIS version string syngo MR B15 found in dicom tag 18,1020 (len = 3 != 6) Repetition Time = 9850, TR = 9850 ms PE Dir COL COL AutoAlign matrix detected AutoAlign Matrix --------------------- 1.000 -0.024 0.008 -0.140; 0.023 0.997 0.073 -9.350; -0.009 -0.073 0.997 -12.796; 0.000 0.000 0.000 1.000; This looks like an MGH DTI volume MGH DTI SeqPack Info 0 ep_b0#1 0.000000 1 1 ep_b0#2 0.000000 2 2 ep_b0#3 0.000000 3 3 ep_b0#4 0.000000 4 4 ep_b0#5 0.000000 5 5 ep_b0#6 0.000000 6 6 ep_b0#7 0.000000 7 7 ep_b0#8 0.000000 8 8 ep_b0#9 0.000000 9 9 ep_b0#10 0.000000 10 10 ep_b700#1 700.000000 1 11 ep_b700#2 700.000000 2 12 ep_b700#3 700.000000 3 13 ep_b700#4 700.000000 4 14 ep_b700#5 700.000000 5 15 ep_b700#6 700.000000 6 16 ep_b700#7 700.000000 7 17 ep_b700#8 700.000000 8 18 ep_b700#9 700.000000 9 19 ep_b700#10 700.000000 10 20 ep_b700#11 700.000000 11 21 ep_b700#12 700.000000 12 22 ep_b700#13 700.000000 13 23 ep_b700#14 700.000000 14 24 ep_b700#15 700.000000 15 25 ep_b700#16 700.000000 16 26 ep_b700#17 700.000000 17 27 ep_b700#18 700.000000 18 28 ep_b700#19 700.000000 19 29 ep_b700#20 700.000000 20 30 ep_b700#21 700.000000 21 31 ep_b700#22 700.000000 22 32 ep_b700#23 700.000000 23 33 ep_b700#24 700.000000 24 34 ep_b700#25 700.000000 25 35 ep_b700#26 700.000000 26 36 ep_b700#27 700.000000 27 37 ep_b700#28 700.000000 28 38 ep_b700#29 700.000000 29 39 ep_b700#30 700.000000 30 40 ep_b700#31 700.000000 31 41 ep_b700#32 700.000000 32 42 ep_b700#33 700.000000 33 43 ep_b700#34 700.000000 34 44 ep_b700#35 700.000000 35 45 ep_b700#36 700.000000 36 46 ep_b700#37 700.000000 37 47 ep_b700#38 700.000000 38 48 ep_b700#39 700.000000 39 49 ep_b700#40 700.000000 40 50 ep_b700#41 700.000000 41 51 ep_b700#42 700.000000 42 52 ep_b700#43 700.000000 43 53 ep_b700#44 700.000000 44 54 ep_b700#45 700.000000 45 55 ep_b700#46 700.000000 46 56 ep_b700#47 700.000000 47 57 ep_b700#48 700.000000 48 58 ep_b700#49 700.000000 49 59 ep_b700#50 700.000000 50 60 ep_b700#51 700.000000 51 61 ep_b700#52 700.000000 52 62 ep_b700#53 700.000000 53 63 ep_b700#54 700.000000 54 64 ep_b700#55 700.000000 55 65 ep_b700#56 700.000000 56 66 ep_b700#57 700.000000 57 67 ep_b700#58 700.000000 58 68 ep_b700#59 700.000000 59 69 ep_b700#60 700.000000 60 bValue = 700 nB0 = 10 nDir = 60 GradFile /apps/freesurfer/diffusion/mgh-dti-seqpack/gradient_mgh_dti60.gdt FileName /home/biba1/testing_tracula/diffusion/elmo.2008/orig/97000-000017-000070.dcm Identification NumarisVer syngo MR B15 ScannerModel TrioTim PatientName CON04_07172008 Date and time StudyDate 20080717 StudyTime 082602.097000 SeriesTime 091538.382000 AcqTime 092431.892500 Acquisition parameters PulseSeq ep_b700#60 Protocol DTI PhEncDir COL EchoNo 1 FlipAngle 90 EchoTime 84 InversionTime -1 RepetitionTime 9850 PhEncFOV 237 ReadoutFOV 237 Image information RunNo 16 SeriesNo 17 ImageNo 70 NImageRows 1152 NImageCols 1152 NFrames 70 SliceArraylSize 79 IsMosaic 1 ImgPos 1042.7820 1078.5270 242.5410 VolRes 1.8516 1.8516 1.8500 VolDim 128 128 79 Vc -0.9997 -0.0232 -0.0095 Vr 0.0249 -0.9576 -0.2870 Vs -0.0024 -0.2872 0.9579 VolCenter 0.0000 0.0000 0.0000 TransferSyntaxUID 1.2.840.10008.1.2.1 UseSliceScaleFactor 0 (slice 0: 1) sagrev = 0, correv =0, trarev = 0 Vs = -0.00244356 -0.287158 0.95788 INFO: no Siemens slice order reversal detected (good!). TR=9850.00, TE=84.00, TI=-1.00, flip angle=90.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (0.0249093, -0.957603, -0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz... Saving bvals and bvecs mri_probedicom --i /home/biba1/testing_tracula/diffusion/elmo.2008/orig/97000-000017-000001.dcm > /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dcminfo.dat flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LPS INFO: input image determinant is 6.34232 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz x -y z /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig_flip.nii.gz INFO: left-right orientation was flipped by fslswapdim fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig_flip.nii.gz INFO: found /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig_flip.mghdti.bvecs /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs mv -f /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig_flip.mghdti.bvals /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvals eddy_correct /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig_flip.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz 0 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0000 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0001 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0002 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0003 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0004 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0005 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0006 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0007 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0008 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0009 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0010 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0011 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0012 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0013 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0014 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0015 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0016 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0017 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0018 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0019 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0020 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0021 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0022 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0023 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0024 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0025 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0026 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0027 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0028 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0029 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0030 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0031 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0032 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0033 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0034 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0035 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0036 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0037 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0038 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0039 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0040 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0041 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0042 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0043 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0044 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0045 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0046 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0047 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0048 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0049 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0050 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0051 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0052 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0053 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0054 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0055 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0056 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0057 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0058 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0059 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0060 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0061 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0062 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0063 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0064 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0065 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0066 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0067 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0068 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0069 mv -f /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs.norot xfmrot /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.ecclog /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs.norot /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs ln -sf /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/data.nii.gz mri_convert --frame 0 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame0.nii.gz mri_convert --frame 0 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame0.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 0 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame0.nii.gz... mri_convert --frame 1 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame1.nii.gz mri_convert --frame 1 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame1.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 1 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame1.nii.gz... mri_convert --frame 2 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame2.nii.gz mri_convert --frame 2 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame2.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 2 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame2.nii.gz... mri_convert --frame 3 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame3.nii.gz mri_convert --frame 3 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame3.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 3 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame3.nii.gz... mri_convert --frame 4 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame4.nii.gz mri_convert --frame 4 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame4.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 4 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame4.nii.gz... mri_convert --frame 5 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame5.nii.gz mri_convert --frame 5 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame5.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 5 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame5.nii.gz... mri_convert --frame 6 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame6.nii.gz mri_convert --frame 6 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame6.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 6 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame6.nii.gz... mri_convert --frame 7 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame7.nii.gz mri_convert --frame 7 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame7.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 7 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame7.nii.gz... mri_convert --frame 8 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame8.nii.gz mri_convert --frame 8 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame8.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 8 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame8.nii.gz... mri_convert --frame 9 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame9.nii.gz mri_convert --frame 9 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame9.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 9 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame9.nii.gz... mri_concat --i /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame0.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame1.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame2.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame3.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame4.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame5.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame6.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame7.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame8.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_frame9.nii.gz --mean --o /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz ninputs = 10 Checking inputs nframestot = 10 Allocing output Done allocing nframes = 10 Computing mean across frames Writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz bet /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb_brain_mask.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff #------------------------------------- #@# Intra-subject registration Fri Mar 4 17:18:11 MST 2016 mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/brain.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/brain.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/recons/elmo.2008/mri/brain.mgz... TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz... flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz tkregister2 --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz --targ /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2anat.mat --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2anatorig.dat tkregister_tcl /apps/freesurfer/tktools/tkregister2.tcl target volume /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz movable volume /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz reg file /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 -0.000; -0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 -0.000; -0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 -0.000; 0.000 -0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2anatorig.mat -inverse /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2anat.mat Log file is /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.log Fri Mar 4 17:18:12 MST 2016 setenv SUBJECTS_DIR /home/biba1/testing_tracula/recons cd /home/biba1/testing_tracula/diffusion /apps/freesurfer/bin/bbregister --s elmo.2008 --init-fsl --dti --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --fslmat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /apps/freesurfer mri_convert /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii mri_convert /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii... fslregister --s elmo.2008 --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister --dof 6 --fsvol brainmask.mgz Log file is /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat.fslregister.log Fri Mar 4 17:18:18 MST 2016 --s elmo.2008 --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister --dof 6 --fsvol brainmask.mgz $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $ BIBAStation1 Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /home/biba1/testing_tracula/diffusion mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/brainmask.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/refvol.fslregister.nii mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/brainmask.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/recons/elmo.2008/mri/brainmask.mgz... TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/refvol.fslregister.nii... -------------------------------------- /home/biba1/testing_tracula/diffusion mri_convert /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/movvol.fslregister.nii --frame 0 mri_convert /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 0 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/movvol.fslregister.nii... Mov determinant is -6.34232 /home/biba1/testing_tracula/diffusion tkregister2_cmdl --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/movvol.fslregister.nii --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/reg0.12867.dat --regheader --fslregout /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat.fsl.mat0 --s elmo.2008 --noedit tkregister_tcl /apps/freesurfer/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/movvol.fslregister.nii reg file /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/reg0.12867.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/biba1/testing_tracula/recons/elmo.2008/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/movvol.fslregister.nii Tmov: -------------------- -1.852 0.000 0.000 118.500; 0.000 0.000 1.850 -73.075; 0.000 -1.852 0.000 118.500; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.023 0.009 -0.450; -0.002 -0.287 0.958 -0.925; 0.025 -0.958 -0.287 1.852; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.023 0.009 -0.450; -0.002 -0.287 0.958 -0.925; 0.025 -0.958 -0.287 1.852; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2008 RegMat --------------------------- 1.000 0.023 0.009 -0.450; -0.002 -0.287 0.958 -0.925; 0.025 -0.958 -0.287 1.852; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -6.34232, ref det = -1 Fri Mar 4 17:18:24 MST 2016 /home/biba1/testing_tracula/diffusion flirt.fsl -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/refvol.fslregister.nii -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat.fsl.mat0 Fri Mar 4 17:18:33 MST 2016 /home/biba1/testing_tracula/diffusion flirt.fsl -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/refvol.fslregister.nii -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat.fsl.mat -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/fslregister/fslmat0.trans.mat -schedule /apps/freesurfer/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s elmo.2008 --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat --fslreg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat.fsl.mat --noedit tkregister_tcl /apps/freesurfer/tktools/tkregister2.tcl ---- FSL registration matrix -------- 1.000 0.026 0.002 6.263; 0.010 -0.289 -0.957 223.164; -0.025 0.957 -0.289 38.787; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii reg file /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/biba1/testing_tracula/recons/elmo.2008/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii Tmov: -------------------- -1.852 0.000 0.000 118.500; 0.000 0.000 1.850 -73.075; 0.000 -1.852 0.000 118.500; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -6.34232, ref det = -1 ---- Input registration matrix (computed) -------- 1.000 0.025 0.010 -0.073; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.025 0.010 -0.073; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2008 RegMat --------------------------- 1.000 0.025 0.010 -0.073; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; (standard_in) 1: syntax error Started at Fri Mar 4 17:18:18 MST 2016 Ended at Fri Mar 4 17:18:52 MST 2016 fslregister Done To check results, run: tkregister2 --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat --surf orig mri_segreg --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii --init-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat --out-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/biba1/testing_tracula/recons cd /home/biba1/testing_tracula/diffusion mri_segreg --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii --init-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat --out-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname BIBAStation1 machine x86_64 user biba1 movvol /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii regfile /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.init.dat subject elmo.2008 dof 6 outregfile /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1457419802 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.025 0.010 -0.073; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.014531 1 -25.0 -25.0 25.0 1.049355 2 -25.0 25.0 -25.0 1.022159 3 -25.0 25.0 25.0 1.023649 4 25.0 -25.0 -25.0 1.000862 5 25.0 -25.0 25.0 0.979032 6 25.0 25.0 -25.0 1.042214 7 25.0 25.0 25.0 1.016988 REL: 8 0.305262 8.148790 1.018599 rel = 0.299689 Initial costs ---------------- Number of surface hits 2755 WM Intensity 198.2200 +/- 62.8976 Ctx Intensity 266.6978 +/- 90.6028 Pct Contrast 27.5615 +/- 30.4164 Cost 0.3053 RelCost 0.2997 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9583 0.9583 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9295 0.9295 0.0 5 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.8943 0.8943 0.0 32 -4.0000 -4.0000 0.0000 -4.0000 0.0000 4.0000 0.8826 0.8826 0.0 33 -4.0000 -4.0000 0.0000 -4.0000 4.0000 -4.0000 0.8456 0.8456 0.0 117 -4.0000 0.0000 0.0000 0.0000 -4.0000 -4.0000 0.8445 0.8445 0.0 118 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.0000 0.8160 0.8160 0.0 121 -4.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8158 0.8158 0.0 123 -4.0000 0.0000 0.0000 0.0000 4.0000 -4.0000 0.8113 0.8113 0.0 124 -4.0000 0.0000 0.0000 0.0000 4.0000 0.0000 0.7803 0.7803 0.0 274 0.0000 -4.0000 0.0000 -4.0000 0.0000 0.0000 0.7062 0.7062 0.0 355 0.0000 0.0000 0.0000 -4.0000 0.0000 0.0000 0.5571 0.5571 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3053 0.3053 0.0 Brute Force -------------------------- Min cost was 0.305262 Number of iterations 729 Search time 0.952000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 -0.242 0.000 0.000 0.000 0.000 0.000 0.2959818198 8 -0.266 0.000 0.000 0.000 0.000 0.000 0.2952880685 9 -0.401 0.000 0.000 0.000 0.000 0.000 0.2937528638 10 -0.388 0.000 0.000 0.000 0.000 0.000 0.2934885640 12 -0.375 0.000 0.000 0.000 0.000 0.000 0.2933744018 16 -0.375 1.000 0.000 0.000 0.000 0.000 0.2657116307 24 -0.375 0.948 0.000 0.000 0.000 0.000 0.2652233375 26 -0.375 0.956 0.000 0.000 0.000 0.000 0.2651622164 27 -0.375 0.973 0.000 0.000 0.000 0.000 0.2649651030 28 -0.375 0.983 0.000 0.000 0.000 0.000 0.2649107243 34 -0.375 0.983 1.000 0.000 0.000 0.000 0.2563620461 38 -0.375 0.983 0.618 0.000 0.000 0.000 0.2485332972 40 -0.375 0.983 0.610 0.000 0.000 0.000 0.2485035402 41 -0.375 0.983 0.609 0.000 0.000 0.000 0.2485020159 47 -0.375 0.983 0.609 -0.618 0.000 0.000 0.2172370817 49 -0.375 0.983 0.609 -0.696 0.000 0.000 0.2164862311 52 -0.375 0.983 0.609 -0.666 0.000 0.000 0.2164593153 54 -0.375 0.983 0.609 -0.678 0.000 0.000 0.2164510439 65 -0.375 0.983 0.609 -0.678 -0.086 0.000 0.2148034744 67 -0.375 0.983 0.609 -0.678 -0.094 0.000 0.2147296066 68 -0.375 0.983 0.609 -0.678 -0.105 0.000 0.2147008399 69 -0.375 0.983 0.609 -0.678 -0.104 0.000 0.2147001582 77 -0.375 0.983 0.609 -0.678 -0.104 -0.123 0.2115082125 83 -0.375 0.983 0.609 -0.678 -0.104 -0.122 0.2115059362 84 -0.375 0.983 0.609 -0.678 -0.104 -0.121 0.2115047375 93 -0.238 0.983 0.609 -0.678 -0.104 -0.121 0.2083513991 95 -0.278 0.983 0.609 -0.678 -0.104 -0.121 0.2076293846 97 -0.270 0.983 0.609 -0.678 -0.104 -0.121 0.2075865873 104 -0.270 0.365 0.609 -0.678 -0.104 -0.121 0.1945243533 106 -0.270 0.288 0.609 -0.678 -0.104 -0.121 0.1944011941 107 -0.270 0.296 0.609 -0.678 -0.104 -0.121 0.1943620772 108 -0.270 0.319 0.609 -0.678 -0.104 -0.121 0.1942762037 118 -0.270 0.319 0.629 -0.678 -0.104 -0.121 0.1937201076 120 -0.270 0.319 0.665 -0.678 -0.104 -0.121 0.1934149922 122 -0.270 0.319 0.668 -0.678 -0.104 -0.121 0.1934142626 129 -0.270 0.319 0.668 -1.296 -0.104 -0.121 0.1766854431 131 -0.270 0.319 0.668 -1.138 -0.104 -0.121 0.1761203906 132 -0.270 0.319 0.668 -1.190 -0.104 -0.121 0.1757428088 134 -0.270 0.319 0.668 -1.180 -0.104 -0.121 0.1756754913 136 -0.270 0.319 0.668 -1.174 -0.104 -0.121 0.1756543784 137 -0.270 0.319 0.668 -1.173 -0.104 -0.121 0.1756539058 145 -0.270 0.319 0.668 -1.173 -0.169 -0.121 0.1742544627 146 -0.270 0.319 0.668 -1.173 -0.268 -0.121 0.1740736739 148 -0.270 0.319 0.668 -1.173 -0.226 -0.121 0.1732768874 150 -0.270 0.319 0.668 -1.173 -0.228 -0.121 0.1732751542 158 -0.270 0.319 0.668 -1.173 -0.228 0.040 0.1715674224 160 -0.270 0.319 0.668 -1.173 -0.228 0.011 0.1715366692 162 -0.270 0.319 0.668 -1.173 -0.228 0.022 0.1715167743 164 -0.270 0.319 0.668 -1.173 -0.228 0.023 0.1715163212 175 -0.209 0.319 0.668 -1.173 -0.228 0.023 0.1701363117 176 -0.178 0.319 0.668 -1.173 -0.228 0.023 0.1695409990 179 -0.171 0.319 0.668 -1.173 -0.228 0.023 0.1694314745 180 -0.165 0.319 0.668 -1.173 -0.228 0.023 0.1693809239 181 -0.162 0.319 0.668 -1.173 -0.228 0.023 0.1693792636 183 -0.163 0.319 0.668 -1.173 -0.228 0.023 0.1693781736 191 -0.163 0.184 0.668 -1.173 -0.228 0.023 0.1667931009 192 -0.163 0.169 0.668 -1.173 -0.228 0.023 0.1664662845 194 -0.163 0.099 0.668 -1.173 -0.228 0.023 0.1655251508 196 -0.163 0.112 0.668 -1.173 -0.228 0.023 0.1654283774 198 -0.163 0.114 0.668 -1.173 -0.228 0.023 0.1654250945 207 -0.163 0.114 0.652 -1.173 -0.228 0.023 0.1652163118 208 -0.163 0.114 0.577 -1.173 -0.228 0.023 0.1650214715 211 -0.163 0.114 0.585 -1.173 -0.228 0.023 0.1650169357 212 -0.163 0.114 0.586 -1.173 -0.228 0.023 0.1650167777 220 -0.163 0.114 0.586 -1.192 -0.228 0.023 0.1649294219 222 -0.163 0.114 0.586 -1.187 -0.228 0.023 0.1649172512 223 -0.163 0.114 0.586 -1.186 -0.228 0.023 0.1649168963 231 -0.163 0.114 0.586 -1.186 -0.248 0.023 0.1648001187 234 -0.163 0.114 0.586 -1.186 -0.249 0.023 0.1647996857 236 -0.163 0.114 0.586 -1.186 -0.250 0.023 0.1647996699 245 -0.163 0.114 0.586 -1.186 -0.250 0.000 0.1647223281 247 -0.163 0.114 0.586 -1.186 -0.250 0.006 0.1647107874 249 -0.163 0.114 0.586 -1.186 -0.250 0.007 0.1647104800 258 -0.190 0.114 0.586 -1.186 -0.250 0.007 0.1641551790 260 -0.221 0.114 0.586 -1.186 -0.250 0.007 0.1638722544 262 -0.214 0.114 0.586 -1.186 -0.250 0.007 0.1638266674 274 -0.214 0.112 0.586 -1.186 -0.250 0.007 0.1638251034 283 -0.214 0.112 0.550 -1.186 -0.250 0.007 0.1637760503 284 -0.214 0.112 0.561 -1.186 -0.250 0.007 0.1637522504 286 -0.214 0.112 0.560 -1.186 -0.250 0.007 0.1637518283 288 -0.214 0.112 0.559 -1.186 -0.250 0.007 0.1637518041 296 -0.214 0.112 0.559 -1.183 -0.250 0.007 0.1637257726 299 -0.214 0.112 0.559 -1.178 -0.250 0.007 0.1637169425 311 -0.214 0.112 0.559 -1.178 -0.248 0.007 0.1637155003 319 -0.214 0.112 0.559 -1.178 -0.248 -0.053 0.1626956352 321 -0.214 0.112 0.559 -1.178 -0.248 -0.113 0.1623177931 324 -0.214 0.112 0.559 -1.178 -0.248 -0.123 0.1622956642 326 -0.214 0.112 0.559 -1.178 -0.248 -0.126 0.1622940645 327 -0.214 0.112 0.559 -1.178 -0.248 -0.127 0.1622938756 337 -0.187 0.112 0.559 -1.178 -0.248 -0.127 0.1622380325 339 -0.197 0.112 0.559 -1.178 -0.248 -0.127 0.1621905453 348 -0.197 0.115 0.559 -1.178 -0.248 -0.127 0.1621677085 350 -0.197 0.125 0.559 -1.178 -0.248 -0.127 0.1621255884 351 -0.197 0.124 0.559 -1.178 -0.248 -0.127 0.1621254499 361 -0.197 0.124 0.554 -1.178 -0.248 -0.127 0.1621211021 370 -0.197 0.124 0.554 -1.188 -0.248 -0.127 0.1620581163 372 -0.197 0.124 0.554 -1.192 -0.248 -0.127 0.1620502378 383 -0.197 0.124 0.554 -1.192 -0.235 -0.127 0.1620134835 384 -0.197 0.124 0.554 -1.192 -0.239 -0.127 0.1620008877 396 -0.197 0.124 0.554 -1.192 -0.239 -0.136 0.1619719752 408 -0.195 0.124 0.554 -1.192 -0.239 -0.136 0.1619637144 409 -0.192 0.124 0.554 -1.192 -0.239 -0.136 0.1619600374 411 -0.193 0.124 0.554 -1.192 -0.239 -0.136 0.1619586533 431 -0.193 0.124 0.558 -1.192 -0.239 -0.136 0.1619570700 432 -0.193 0.124 0.556 -1.192 -0.239 -0.136 0.1619565319 440 -0.193 0.124 0.556 -1.198 -0.239 -0.136 0.1619539275 441 -0.193 0.124 0.556 -1.197 -0.239 -0.136 0.1619514639 442 -0.193 0.124 0.556 -1.196 -0.239 -0.136 0.1619511840 454 -0.193 0.124 0.556 -1.196 -0.240 -0.136 0.1619510776 463 -0.193 0.124 0.556 -1.196 -0.240 -0.144 0.1619503936 464 -0.193 0.124 0.556 -1.196 -0.240 -0.140 0.1619447988 477 -0.191 0.124 0.556 -1.196 -0.240 -0.140 0.1619443074 497 -0.191 0.124 0.560 -1.196 -0.240 -0.140 0.1619418992 529 -0.191 0.124 0.559 -1.196 -0.240 -0.141 0.1619409720 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 1.000413 1 -25.0 -25.0 25.0 1.021642 2 -25.0 25.0 -25.0 1.001194 3 -25.0 25.0 25.0 1.011474 4 25.0 -25.0 -25.0 1.005350 5 25.0 -25.0 25.0 0.981060 6 25.0 25.0 -25.0 1.044049 7 25.0 25.0 25.0 1.009886 REL: 8 0.161941 8.075069 1.009384 rel = 0.160436 Number of iterations 6 Min cost was 0.161941 Number of FunctionCalls 531 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.733000 sec Parameters at optimum (transmm) -0.19147 0.12449 0.55892 Parameters at optimum (rotdeg) -1.19569 -0.24008 -0.14144 Final costs ---------------- Number of surface hits 2755 WM Intensity 193.0911 +/- 61.8847 Ctx Intensity 266.2914 +/- 78.2016 Pct Contrast 30.9388 +/- 26.9342 Cost 0.1619 RelCost 0.2997 Reg at min cost was 1.000 0.028 0.013 -0.294; -0.004 -0.309 0.951 -7.385; 0.031 -0.951 -0.309 3.098; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/bbr.pass1.dat, type = 14 Original Reg 1.000 0.025 0.010 -0.073; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 -0.003 -0.004 0.221; 0.002 0.020 0.006 -0.176; -0.004 -0.006 0.020 -0.716; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 1.153810 Computing change in rh position Surface RMS Diff (mm) 1.196156 2.435864 mri_segreg done mri_segreg --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii --init-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/bbr.pass1.dat --out-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/biba1/testing_tracula/recons cd /home/biba1/testing_tracula/diffusion mri_segreg --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii --init-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/bbr.pass1.dat --out-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname BIBAStation1 machine x86_64 user biba1 movvol /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/template.nii regfile /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.12831/bbr.pass1.dat subject elmo.2008 dof 6 outregfile /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1457423428 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.028 0.013 -0.294; -0.004 -0.309 0.951 -7.385; 0.031 -0.951 -0.309 3.098; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.005088 1 -25.0 -25.0 25.0 1.029713 2 -25.0 25.0 -25.0 1.023469 3 -25.0 25.0 25.0 1.013151 4 25.0 -25.0 -25.0 1.011980 5 25.0 -25.0 25.0 1.005450 6 25.0 25.0 -25.0 1.030726 7 25.0 25.0 25.0 1.020579 REL: 8 0.187645 8.140155 1.017519 rel = 0.184414 Initial costs ---------------- Number of surface hits 275274 WM Intensity 193.5719 +/- 61.5246 Ctx Intensity 266.4656 +/- 79.4076 Pct Contrast 30.8051 +/- 26.8174 Cost 0.1876 RelCost 0.1844 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1790 0.1790 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1767 0.1767 0.0 2 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.1760 0.1760 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.1744 0.1744 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.1744 0.1744 0.0 6 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.1729 0.1729 0.0 13 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.1718 0.1718 0.0 16 -0.1000 -0.1000 -0.1000 0.0000 0.1000 0.0000 0.1717 0.1717 0.0 22 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.1714 0.1714 0.0 34 -0.1000 -0.1000 0.0000 -0.1000 0.1000 0.0000 0.1710 0.1710 0.0 38 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1000 0.1701 0.1701 0.0 40 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.1674 0.1674 0.0 41 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.1000 0.1672 0.1672 0.0 68 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.1000 0.1669 0.1669 0.0 121 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1660 0.1660 0.0 149 -0.1000 0.0000 0.1000 0.0000 0.0000 0.1000 0.1659 0.1659 0.0 158 -0.1000 0.0000 0.1000 0.1000 0.0000 0.1000 0.1654 0.1654 0.0 337 0.0000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.1652 0.1652 0.0 363 0.0000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.1639 0.1639 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1619 0.1619 0.0 Brute Force -------------------------- Min cost was 0.161941 Number of iterations 729 Search time 0.962000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 0.104 0.000 0.000 0.000 0.000 0.000 0.1869059029 8 0.095 0.000 0.000 0.000 0.000 0.000 0.1868953030 17 0.095 0.020 0.000 0.000 0.000 0.000 0.1868411437 18 0.095 0.025 0.000 0.000 0.000 0.000 0.1868409693 19 0.095 0.023 0.000 0.000 0.000 0.000 0.1868404716 27 0.095 0.023 0.088 0.000 0.000 0.000 0.1865343647 29 0.095 0.023 0.084 0.000 0.000 0.000 0.1865331408 30 0.095 0.023 0.083 0.000 0.000 0.000 0.1865330490 38 0.095 0.023 0.083 -0.067 0.000 0.000 0.1862617708 40 0.095 0.023 0.083 -0.065 0.000 0.000 0.1862614762 49 0.095 0.023 0.083 -0.065 0.029 0.000 0.1861564849 50 0.095 0.023 0.083 -0.065 0.036 0.000 0.1861452073 51 0.095 0.023 0.083 -0.065 0.049 0.000 0.1861445294 53 0.095 0.023 0.083 -0.065 0.043 0.000 0.1861406522 55 0.095 0.023 0.083 -0.065 0.044 0.000 0.1861405598 64 0.095 0.023 0.083 -0.065 0.044 0.149 0.1848208198 65 0.095 0.023 0.083 -0.065 0.044 0.154 0.1848044655 66 0.095 0.023 0.083 -0.065 0.044 0.190 0.1847963168 68 0.095 0.023 0.083 -0.065 0.044 0.174 0.1847777727 70 0.095 0.023 0.083 -0.065 0.044 0.175 0.1847777203 80 0.094 0.023 0.083 -0.065 0.044 0.175 0.1847758356 81 0.083 0.023 0.083 -0.065 0.044 0.175 0.1847742877 83 0.088 0.023 0.083 -0.065 0.044 0.175 0.1847703814 93 0.088 0.031 0.083 -0.065 0.044 0.175 0.1847656966 103 0.088 0.031 0.082 -0.065 0.044 0.175 0.1847655704 104 0.088 0.031 0.081 -0.065 0.044 0.175 0.1847655267 114 0.088 0.031 0.081 -0.069 0.044 0.175 0.1847641940 116 0.088 0.031 0.081 -0.070 0.044 0.175 0.1847639592 125 0.088 0.031 0.081 -0.070 0.001 0.175 0.1845951067 127 0.088 0.031 0.081 -0.070 0.008 0.175 0.1845866291 128 0.088 0.031 0.081 -0.070 0.009 0.175 0.1845865495 138 0.088 0.031 0.081 -0.070 0.009 0.176 0.1845865068 147 0.111 0.031 0.081 -0.070 0.009 0.176 0.1845459163 148 0.109 0.031 0.081 -0.070 0.009 0.176 0.1845431372 149 0.105 0.031 0.081 -0.070 0.009 0.176 0.1845410928 159 0.105 0.028 0.081 -0.070 0.009 0.176 0.1845400265 168 0.105 0.028 0.090 -0.070 0.009 0.176 0.1845199749 169 0.105 0.028 0.100 -0.070 0.009 0.176 0.1845197639 170 0.105 0.028 0.095 -0.070 0.009 0.176 0.1845174444 171 0.105 0.028 0.096 -0.070 0.009 0.176 0.1845174343 188 0.105 0.028 0.096 -0.070 -0.008 0.176 0.1844934685 189 0.105 0.028 0.096 -0.070 -0.007 0.176 0.1844919230 190 0.105 0.028 0.096 -0.070 -0.004 0.176 0.1844900765 192 0.105 0.028 0.096 -0.070 -0.005 0.176 0.1844898042 202 0.105 0.028 0.096 -0.070 -0.005 0.179 0.1844887573 212 0.117 0.028 0.096 -0.070 -0.005 0.179 0.1844801702 213 0.115 0.028 0.096 -0.070 -0.005 0.179 0.1844787770 214 0.113 0.028 0.096 -0.070 -0.005 0.179 0.1844778758 216 0.112 0.028 0.096 -0.070 -0.005 0.179 0.1844778690 225 0.112 0.032 0.096 -0.070 -0.005 0.179 0.1844776084 226 0.112 0.030 0.096 -0.070 -0.005 0.179 0.1844773157 236 0.112 0.030 0.098 -0.070 -0.005 0.179 0.1844771339 246 0.112 0.030 0.098 -0.069 -0.005 0.179 0.1844769485 247 0.112 0.030 0.098 -0.068 -0.005 0.179 0.1844769203 256 0.112 0.030 0.098 -0.068 -0.006 0.179 0.1844765200 267 0.112 0.030 0.098 -0.068 -0.006 0.180 0.1844764550 275 0.115 0.031 0.098 -0.067 -0.007 0.180 0.1844758033 276 0.114 0.031 0.098 -0.067 -0.007 0.180 0.1844757751 279 0.114 0.031 0.098 -0.067 -0.007 0.180 0.1844755731 291 0.114 0.031 0.098 -0.067 -0.007 0.179 0.1844755049 302 0.114 0.032 0.098 -0.067 -0.007 0.179 0.1844752640 312 0.114 0.032 0.097 -0.067 -0.007 0.179 0.1844752414 345 0.114 0.032 0.097 -0.067 -0.007 0.179 0.1844752164 346 0.114 0.032 0.097 -0.067 -0.007 0.179 0.1844751728 348 0.114 0.032 0.097 -0.067 -0.007 0.179 0.1844751323 Powell done niters = 5 Computing relative cost 0 -25.0 -25.0 -25.0 1.005101 1 -25.0 -25.0 25.0 1.030980 2 -25.0 25.0 -25.0 1.023480 3 -25.0 25.0 25.0 1.012638 4 25.0 -25.0 -25.0 1.010300 5 25.0 -25.0 25.0 1.004664 6 25.0 25.0 -25.0 1.031980 7 25.0 25.0 25.0 1.020221 REL: 8 0.184475 8.139363 1.017420 rel = 0.181317 Number of iterations 5 Min cost was 0.184475 Number of FunctionCalls 414 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 26.058000 sec Parameters at optimum (transmm) 0.11440 0.03209 0.09692 Parameters at optimum (rotdeg) -0.06713 -0.00668 0.17908 Final costs ---------------- Number of surface hits 275274 WM Intensity 193.3440 +/- 60.9451 Ctx Intensity 266.5958 +/- 79.0254 Pct Contrast 30.9770 +/- 26.6510 Cost 0.1845 RelCost 0.1844 Reg at min cost was 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.350; 0.031 -0.950 -0.310 3.203; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.028 0.013 -0.294; -0.004 -0.309 0.951 -7.385; 0.031 -0.951 -0.309 3.098; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 -0.001 0.003 -0.137; -0.003 0.001 0.000 -0.035; -0.000 -0.000 0.001 -0.106; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.186917 Computing change in rh position Surface RMS Diff (mm) 0.206364 0.379573 mri_segreg done tkregister2_cmdl --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /apps/freesurfer/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz reg file /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.350; 0.031 -0.950 -0.310 3.203; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /home/biba1/testing_tracula/recons/elmo.2008/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz Tmov: -------------------- -1.852 0.000 0.000 118.500; 0.000 0.000 1.850 -73.075; 0.000 -1.852 0.000 118.500; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.350; 0.031 -0.950 -0.310 3.203; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2008 RegMat --------------------------- 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.350; 0.031 -0.950 -0.310 3.203; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -6.34232, ref det = -1 Cleaning up Started at Fri Mar 4 17:18:12 MST 2016 Ended at Fri Mar 4 17:19:40 MST 2016 BBR-Run-Time-Sec 88 bbregister Done To check results, run: tkregister2 --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.mat -inverse /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -concat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.mat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2anatorig.mat convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2anat.bbr.mat -inverse /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Fri Mar 4 17:19:40 MST 2016 flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_mni.nii.gz -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2anat.mat -inverse /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat -concat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2diff.bbr.mat -inverse /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2mni.mat -concat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2anatorig.mat -inverse /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Fri Mar 4 17:21:25 MST 2016 mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/biba1/testing_tracula/diffusion cmdline mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname BIBAStation1 machine x86_64 user biba1 input /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 475560 values in range Counting number of voxels Found 475560 voxels in final mask mri_binarize done mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/biba1/testing_tracula/diffusion cmdline mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname BIBAStation1 machine x86_64 user biba1 input /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 505262 values in range Counting number of voxels Found 505262 voxels in final mask mri_binarize done mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/biba1/testing_tracula/diffusion cmdline mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname BIBAStation1 machine x86_64 user biba1 input /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 20984 values in range Counting number of voxels Found 20984 voxels in final mask mri_binarize done mri_aparc2aseg --s elmo.2008 --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/biba1/testing_tracula/recons subject elmo.2008 outvol /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /home/biba1/testing_tracula/recons/elmo.2008/surf/lh.white Reading lh pial surface /home/biba1/testing_tracula/recons/elmo.2008/surf/lh.pial Loading lh annotations from /home/biba1/testing_tracula/recons/elmo.2008/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /home/biba1/testing_tracula/recons/elmo.2008/surf/rh.white Reading rh pial surface /home/biba1/testing_tracula/recons/elmo.2008/surf/rh.pial Loading rh annotations from /home/biba1/testing_tracula/recons/elmo.2008/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/biba1/testing_tracula/recons/elmo.2008/mri/ribbon.mgz Loading filled from /home/biba1/testing_tracula/recons/elmo.2008/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /home/biba1/testing_tracula/recons/elmo.2008/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 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/home/biba1/testing_tracula/diffusion cmdline mri_binarize --i /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex.nii.gz sysname Linux hostname BIBAStation1 machine x86_64 user biba1 input /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 558497 values in range Counting number of voxels Found 558497 voxels in final mask mri_binarize done mri_binarize --i /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/biba1/testing_tracula/diffusion cmdline mri_binarize --i /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname BIBAStation1 machine x86_64 user biba1 input /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 835067 values in range Counting number of voxels Found 835067 voxels in final mask mri_binarize done mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 16 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/biba1/testing_tracula/diffusion cmdline mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 16 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname BIBAStation1 machine x86_64 user biba1 input /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 21025 values in range Counting number of voxels Found 21025 voxels in final mask mri_binarize done fslmaths /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz -add /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/Brain-Stem.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/brainmask.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/brainmask.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/recons/elmo.2008/mri/brainmask.mgz... TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/notventricles.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz... TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter++.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter++.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/notventricles.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/notventricles.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/notventricles.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/notventricles.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/cortex.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/cortex+2mm.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/cortex+2mm+bs.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/aparc+aseg.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/aparc+aseg+2mm.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz -k /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_snr.txt flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lowb_brain_mask.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour ln -sf /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Fri Mar 4 17:25:13 MST 2016 dtifit -k /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz -m /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs -b /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvals -o /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit 0 128 0 128 0 79 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed 57 slices processed 58 slices processed 59 slices processed 60 slices processed 61 slices processed 62 slices processed 63 slices processed 64 slices processed 65 slices processed 66 slices processed 67 slices processed 68 slices processed 69 slices processed 70 slices processed 71 slices processed 72 slices processed 73 slices processed 74 slices processed 75 slices processed 76 slices processed 77 slices processed 78 slices processed flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_FA.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_L1.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_L2.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_L3.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_MD.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_MO.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_S0.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Fri Mar 4 17:25:27 MST 2016 /apps/freesurfer/bin/dmri_train --outdir /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.elmo.2008.11084.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_FA.nii.gz --cptdir /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc cwd /home/biba1/testing_tracula/diffusion cmdline /apps/freesurfer/bin/dmri_train --outdir /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.elmo.2008.11084.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_FA.nii.gz --cptdir /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc sysname Linux hostname BIBAStation1 machine x86_64 user biba1 Output directory: /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni Output directory in test subject's space: /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.elmo.2008.11084.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_FA.nii.gz Loading affine registration from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 599 streamlines for straying off mask INFO: Rejected 78 streamlines for reversing direction INFO: Rejected 35 streamlines as length outliers INFO: Have 7720 total streamlines (min/mean/max length: 59/99/132) Loading segmentation from /apps/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4944 non-truncated streamlines (min/mean/max length: 59/99/132) INFO: Center of mass of start points: (98+/-3, 98+/-6, 39+/-12) INFO: Center of mass of midpoints: (112+/-3, 110+/-4, 78+/-7) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-6) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 38282 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0281392 INFO: Points where local peeks in curvature occur are 100 104 52 (curv = 0.0739372) 109 110 69 (curv = 0.0484531) 115 109 97 (curv = 0.0318118) 116 108 102 (curv = 0.0491033) 114 104 115 (curv = 0.0385678) 111 104 130 (curv = 0.0426496) INFO: Intermediate dominant points are 100 99 33 100 104 52 109 110 69 116 108 102 113 104 120 113 104 142 INFO: Final dominant points are 100 99 33 100 104 52 109 110 69 116 108 102 111 104 130 113 104 142 INFO: Selected control points are 100 99 33 100 105 52 109 110 70 115 108 102 111 103 129 113 104 142 INFO: Distances between consecutive points are 20 21 33 28 13 INFO: Selected control points in test subject's space are 69 58 8 69 60 18 74 61 27 77 58 43 75 54 56 77 53 63 INFO: Distances between consecutive points in test subject's space are 10 10 17 14 7 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 52.856 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 1100 streamlines for straying off mask INFO: Rejected 75 streamlines for reversing direction INFO: Rejected 31 streamlines as length outliers INFO: Have 8090 total streamlines (min/mean/max length: 58/98/139) Processing pathway 2 of 18... Matching streamline ends INFO: Have 4993 non-truncated streamlines (min/mean/max length: 58/98/138) INFO: Center of mass of start points: (82+/-3, 97+/-6, 41+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 79+/-7) INFO: Center of mass of end points: (68+/-8, 105+/-11, 141+/-7) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 44774 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 115 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0315989 INFO: Points where local peeks in curvature occur are 80 96 46 (curv = 0.0447592) 78 101 58 (curv = 0.0480854) 74 107 65 (curv = 0.0525972) 69 110 73 (curv = 0.0382519) 66 110 81 (curv = 0.032785) 63 110 104 (curv = 0.0677648) 67 105 119 (curv = 0.0413354) 71 104 132 (curv = 0.0831429) INFO: Intermediate dominant points are 80 95 27 80 96 46 74 107 65 63 110 104 71 104 132 71 108 145 INFO: Final dominant points are 80 95 27 80 96 46 74 107 65 63 110 104 71 104 132 71 108 145 INFO: Selected control points are 80 95 27 80 94 47 72 108 66 63 110 103 71 104 130 71 108 145 INFO: Distances between consecutive points are 20 25 38 29 16 INFO: Selected control points in test subject's space are 59 56 5 59 54 15 55 60 26 51 58 44 55 54 57 55 55 65 INFO: Distances between consecutive points in test subject's space are 10 13 19 14 8 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 57.502 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 53 streamlines for straying off mask INFO: Rejected 29 streamlines for reversing direction INFO: Rejected 22 streamlines as length outliers INFO: Have 3504 total streamlines (min/mean/max length: 53/91/135) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1421 non-truncated streamlines (min/mean/max length: 53/97/135) INFO: Center of mass of start points: (134+/-8, 137+/-5, 41+/-10) INFO: Center of mass of midpoints: (133+/-4, 103+/-3, 59+/-5) INFO: Center of mass of end points: (114+/-13, 47+/-12, 71+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 38426 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.032025 INFO: Points where local peeks in curvature occur are 132 117 53 (curv = 0.060036) 134 109 56 (curv = 0.0410491) 135 95 59 (curv = 0.0780916) 126 76 69 (curv = 0.0630608) 120 60 69 (curv = 0.0507169) INFO: Intermediate dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Final dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Selected control points are 136 136 36 132 117 54 134 95 59 127 76 68 109 48 69 INFO: Distances between consecutive points are 26 23 22 33 INFO: Selected control points in test subject's space are 87 77 12 85 66 20 87 55 20 83 44 24 75 30 22 INFO: Distances between consecutive points in test subject's space are 14 11 12 16 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 12.26 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 28 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2112 total streamlines (min/mean/max length: 52/91/129) Processing pathway 4 of 18... Matching streamline ends INFO: Have 1022 non-truncated streamlines (min/mean/max length: 57/100/126) INFO: Center of mass of start points: (46+/-8, 140+/-5, 42+/-9) INFO: Center of mass of midpoints: (47+/-4, 105+/-2, 57+/-4) INFO: Center of mass of end points: (65+/-11, 46+/-11, 73+/-12) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28244 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0317225 INFO: Points where local peeks in curvature occur are 46 118 50 (curv = 0.0388051) 48 111 56 (curv = 0.0555527) 48 104 60 (curv = 0.0505194) 47 97 60 (curv = 0.0628071) 60 66 75 (curv = 0.0333833) INFO: Intermediate dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 INFO: Final dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 137 39 48 112 56 49 87 66 61 63 75 71 41 64 INFO: Distances between consecutive points are 31 27 28 27 INFO: Selected control points in test subject's space are 39 76 15 43 63 21 44 49 24 50 36 27 56 26 20 INFO: Distances between consecutive points in test subject's space are 15 14 15 14 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0323469 INFO: Points where local peeks in curvature occur are 49 130 44 (curv = 0.0612801) 48 126 50 (curv = 0.0393571) 48 113 58 (curv = 0.0660797) 44 97 61 (curv = 0.0718496) 45 90 63 (curv = 0.0473725) 56 74 73 (curv = 0.0609765) 60 64 74 (curv = 0.0331985) INFO: Intermediate dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 INFO: Final dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 57 71 73 76 42 76 INFO: Distances between consecutive points are 25 28 31 35 INFO: Selected control points in test subject's space are 43 80 16 43 68 20 41 54 23 48 40 27 58 26 26 INFO: Distances between consecutive points in test subject's space are 13 14 16 17 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330161 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0477155) 47 123 49 (curv = 0.0487921) 45 116 52 (curv = 0.0594563) 46 109 56 (curv = 0.052095) 45 104 58 (curv = 0.0485911) 49 84 64 (curv = 0.0452784) 56 75 72 (curv = 0.0471211) INFO: Intermediate dominant points are 47 145 41 45 116 52 46 96 60 56 75 72 74 43 79 INFO: Final dominant points are 47 145 41 45 116 52 47 89 63 56 75 72 74 43 79 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 122 50 46 97 60 58 71 73 74 43 79 INFO: Distances between consecutive points are 25 27 31 33 INFO: Selected control points in test subject's space are 42 80 16 42 68 19 42 55 22 49 41 27 57 26 28 INFO: Distances between consecutive points in test subject's space are 12 13 16 17 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0297754 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0481203) 47 123 49 (curv = 0.0496145) 45 116 52 (curv = 0.0553555) 46 109 56 (curv = 0.0439455) 47 88 63 (curv = 0.0344062) 56 73 72 (curv = 0.0399798) 59 66 73 (curv = 0.0363352) INFO: Intermediate dominant points are 47 145 41 45 116 52 45 98 59 56 73 72 75 46 75 INFO: Final dominant points are 47 145 41 45 116 52 47 88 63 56 73 72 75 46 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 123 49 45 99 59 56 73 72 75 46 75 INFO: Distances between consecutive points are 23 26 31 33 INFO: Selected control points in test subject's space are 42 80 16 42 69 19 42 56 22 48 42 26 58 28 26 INFO: Distances between consecutive points in test subject's space are 11 13 16 17 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.032913 INFO: Points where local peeks in curvature occur are 49 131 44 (curv = 0.0580746) 48 114 58 (curv = 0.0639599) 44 97 61 (curv = 0.0728882) 46 88 64 (curv = 0.0464374) 56 74 73 (curv = 0.0419059) 59 67 73 (curv = 0.0474898) 66 58 74 (curv = 0.042791) INFO: Intermediate dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 INFO: Final dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 58 70 73 76 42 76 INFO: Distances between consecutive points are 25 28 33 33 INFO: Selected control points in test subject's space are 43 80 16 43 68 20 41 54 23 49 40 27 58 26 26 INFO: Distances between consecutive points in test subject's space are 13 14 17 17 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330215 INFO: Points where local peeks in curvature occur are 47 130 47 (curv = 0.0693609) 49 116 57 (curv = 0.0845046) 48 109 57 (curv = 0.040301) 47 102 59 (curv = 0.0437753) 48 88 65 (curv = 0.053778) 57 67 72 (curv = 0.0353276) INFO: Intermediate dominant points are 41 145 49 49 116 57 48 88 65 57 67 72 61 50 72 INFO: Final dominant points are 41 145 49 49 116 57 48 88 65 57 67 72 61 50 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 145 49 48 122 53 47 99 60 54 76 70 61 50 72 INFO: Distances between consecutive points are 24 24 26 27 INFO: Selected control points in test subject's space are 39 80 20 43 68 20 43 56 22 47 43 26 50 30 25 INFO: Distances between consecutive points in test subject's space are 13 12 14 13 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0267388 INFO: Points where local peeks in curvature occur are 47 129 47 (curv = 0.0624221) 49 118 56 (curv = 0.0769472) 48 106 59 (curv = 0.0335264) 48 89 65 (curv = 0.0476719) 55 73 71 (curv = 0.0312977) INFO: Intermediate dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Final dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 40 145 49 48 121 53 48 98 62 54 74 71 63 51 72 INFO: Distances between consecutive points are 26 25 26 25 INFO: Selected control points in test subject's space are 39 80 20 43 67 20 43 55 23 47 42 26 51 30 25 INFO: Distances between consecutive points in test subject's space are 14 12 14 13 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0378734 INFO: Points where local peeks in curvature occur are 45 110 56 (curv = 0.0393051) 47 86 64 (curv = 0.0499122) 55 74 72 (curv = 0.0611631) 58 65 72 (curv = 0.0564798) 66 52 74 (curv = 0.195512) INFO: Intermediate dominant points are 43 135 37 45 110 56 46 87 63 55 74 72 61 51 62 INFO: Final dominant points are 43 135 37 45 110 56 47 85 64 55 74 72 61 51 62 WARN: Defaulting to equidistant control points INFO: Selected control points are 43 135 37 45 113 55 46 90 62 57 66 72 61 51 62 INFO: Distances between consecutive points are 28 24 28 18 INFO: Selected control points in test subject's space are 40 76 13 42 63 21 42 51 23 48 38 26 50 31 20 INFO: Distances between consecutive points in test subject's space are 15 12 15 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0274305 INFO: Points where local peeks in curvature occur are 46 129 47 (curv = 0.0683541) 49 117 56 (curv = 0.0800283) 48 107 59 (curv = 0.0379104) 48 89 65 (curv = 0.0367021) 49 85 67 (curv = 0.032281) INFO: Intermediate dominant points are 40 145 49 49 117 56 48 89 65 54 74 71 61 50 72 INFO: Final dominant points are 40 145 49 49 117 56 48 89 65 58 62 73 61 50 72 INFO: Selected control points are 40 145 49 49 117 54 48 89 66 58 63 73 61 50 72 INFO: Distances between consecutive points are 30 30 29 13 INFO: Selected control points in test subject's space are 39 80 20 44 65 21 43 50 25 49 36 26 50 30 25 INFO: Distances between consecutive points in test subject's space are 16 16 15 6 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 8.085 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 111 streamlines for straying off mask INFO: Rejected 28 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5155 total streamlines (min/mean/max length: 8/57/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3626 non-truncated streamlines (min/mean/max length: 8/57/101) INFO: Center of mass of start points: (128+/-7, 144+/-4, 41+/-5) INFO: Center of mass of midpoints: (125+/-2, 126+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-16, 58+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 22818 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 68 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0689837 INFO: Points where local peeks in curvature occur are 126 124 54 (curv = 0.148395) 124 130 60 (curv = 0.100467) 109 153 61 (curv = 0.0751884) INFO: Intermediate dominant points are 125 145 40 126 124 54 123 133 61 109 153 61 107 166 56 INFO: Final dominant points are 125 145 40 126 124 54 114 144 59 109 153 61 107 166 56 INFO: Selected control points are 125 145 40 128 125 53 115 144 61 109 152 60 107 166 56 INFO: Distances between consecutive points are 24 24 10 15 INFO: Selected control points in test subject's space are 82 81 15 83 70 20 77 79 25 73 83 25 72 91 24 INFO: Distances between consecutive points in test subject's space are 12 12 6 8 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 15.027 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 333 streamlines for straying off mask INFO: Rejected 112 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6476 total streamlines (min/mean/max length: 8/61/107) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4924 non-truncated streamlines (min/mean/max length: 8/61/107) INFO: Center of mass of start points: (53+/-6, 145+/-4, 41+/-6) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 24349 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0634605 INFO: Points where local peeks in curvature occur are 52 132 46 (curv = 0.0872989) 55 129 54 (curv = 0.165012) 61 137 60 (curv = 0.0656823) 73 151 61 (curv = 0.0884418) INFO: Intermediate dominant points are 50 147 43 55 129 54 64 139 59 73 151 61 77 176 55 INFO: Final dominant points are 50 147 43 55 129 54 67 141 60 73 151 61 77 176 55 INFO: Selected control points are 50 147 43 55 128 52 66 143 61 73 151 60 77 176 55 INFO: Distances between consecutive points are 22 21 11 26 INFO: Selected control points in test subject's space are 44 81 17 46 71 20 52 78 26 55 82 26 57 96 25 INFO: Distances between consecutive points in test subject's space are 11 11 5 14 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 23.084 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 746 streamlines for straying off mask INFO: Rejected 236 streamlines for reversing direction INFO: Rejected 148 streamlines as length outliers INFO: Have 8645 total streamlines (min/mean/max length: 87/132/160) Processing pathway 7 of 18... Matching streamline ends INFO: Have 6398 non-truncated streamlines (min/mean/max length: 87/133/161) INFO: Center of mass of start points: (102+/-6, 38+/-9, 99+/-16) INFO: Center of mass of midpoints: (90+/-3, 89+/-4, 83+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-9, 99+/-17) INFO: Split streamlines into 35 segments Computing path histograms INFO: Total streamline volume is 68450 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.049112 INFO: Points where local peeks in curvature occur are 111 49 87 (curv = 0.107178) 118 64 87 (curv = 0.111705) 89 91 83 (curv = 0.0608033) 83 90 83 (curv = 0.0511514) 62 66 87 (curv = 0.112736) 68 52 86 (curv = 0.0776407) 71 47 89 (curv = 0.0644977) INFO: Intermediate dominant points are 105 42 106 118 64 87 112 77 84 89 91 83 62 66 87 71 47 89 77 39 110 INFO: Final dominant points are 105 42 106 118 64 87 101 88 83 89 91 83 62 66 87 71 47 89 77 39 110 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 106 113 52 87 112 76 84 90 91 83 67 76 86 68 52 86 77 39 110 INFO: Distances between consecutive points are 23 24 27 28 24 29 INFO: Selected control points in test subject's space are 73 24 41 77 30 32 76 43 32 65 50 33 53 42 33 54 30 32 59 22 43 INFO: Distances between consecutive points in test subject's space are 12 13 13 14 12 14 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0489095 INFO: Points where local peeks in curvature occur are 110 43 95 (curv = 0.0768584) 112 50 86 (curv = 0.106706) 118 64 85 (curv = 0.110581) 107 84 82 (curv = 0.0551333) 88 91 83 (curv = 0.049169) 79 89 83 (curv = 0.0694687) 63 66 87 (curv = 0.100722) 69 52 87 (curv = 0.0718068) INFO: Intermediate dominant points are 106 41 111 112 50 86 118 64 85 79 89 83 63 66 87 71 50 87 78 39 111 INFO: Final dominant points are 106 41 111 112 50 86 118 64 85 79 89 83 63 66 87 76 42 97 78 39 111 INFO: Selected control points are 106 41 111 111 48 87 119 69 85 81 91 83 63 64 86 76 42 94 78 39 111 INFO: Distances between consecutive points are 25 23 44 33 27 17 INFO: Selected control points in test subject's space are 74 23 43 76 28 31 80 39 32 60 50 33 51 36 33 58 24 35 59 22 43 INFO: Distances between consecutive points in test subject's space are 13 12 23 17 14 8 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 69.874 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 895 streamlines for straying off mask INFO: Rejected 406 streamlines for reversing direction INFO: Rejected 57 streamlines as length outliers INFO: Have 26269 total streamlines (min/mean/max length: 49/91/121) Processing pathway 8 of 18... Matching streamline ends INFO: Have 17296 non-truncated streamlines (min/mean/max length: 52/90/123) INFO: Center of mass of start points: (103+/-5, 187+/-6, 75+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 76+/-12) New invocation of trac-all Fri Mar 4 17:38:49 MST 2016 /home/biba1/testing_tracula/diffusion /apps/freesurfer/bin/trac-all -prep -c dmrirc.tutorial Subject elmo.2008 SUBJECTS_DIR /home/biba1/testing_tracula/recons FREESURFER_HOME /apps/freesurfer Actual FREESURFER_HOME /apps/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 biba1 BIBAStation1 Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127629 maxlocks unlimited maxsignal 127629 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16355668 12176380 4179288 0 77328 10648444 -/+ buffers/cache: 1450608 14905060 Swap: 16698364 544 16697820 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:38:49-GMT BuildTimeStamp: Aug 22 2014 21:04:47 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:38:49-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:38:49-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:38:49-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:38:49-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:38:49-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:38:49-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /apps/freesurfer Previous: /usr/local/freesurfer/dev New invocation of trac-preproc biba1 BIBAStation1 Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127629 maxlocks unlimited maxsignal 127629 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16355668 12178320 4177348 0 77336 10648424 -/+ buffers/cache: 1452560 14903108 Swap: 16698364 544 16697820 New invocation of trac-all Fri Mar 4 17:39:41 MST 2016 /home/biba1/testing_tracula/diffusion /apps/freesurfer/bin/trac-all -prep -c dmrirc.tutorial Subject elmo.2008 SUBJECTS_DIR /home/biba1/testing_tracula/recons FREESURFER_HOME /apps/freesurfer Actual FREESURFER_HOME /apps/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 biba1 BIBAStation1 Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127629 maxlocks unlimited maxsignal 127629 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16355668 12176560 4179108 0 77420 10648484 -/+ buffers/cache: 1450656 14905012 Swap: 16698364 544 16697820 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:39:41-GMT BuildTimeStamp: Aug 22 2014 21:04:47 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:39:41-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:39:41-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:39:41-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:39:41-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:39:41-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/05-00:39:41-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /apps/freesurfer Previous: /usr/local/freesurfer/dev New invocation of trac-preproc biba1 BIBAStation1 Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127629 maxlocks unlimited maxsignal 127629 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16355668 12178268 4177400 0 77420 10648492 -/+ buffers/cache: 1452356 14903312 Swap: 16698364 544 16697820 #------------------------------------- /apps/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Fri Mar 4 17:39:42 MST 2016 mri_convert /home/biba1/testing_tracula/diffusion/elmo.2008/orig/97000-000017-000001.dcm /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz mri_convert /home/biba1/testing_tracula/diffusion/elmo.2008/orig/97000-000017-000001.dcm /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/orig/97000-000017-000001.dcm... crypt_gkey = FS0o291M9zb7k Getting Series No INFO: Found 72 files in /home/biba1/testing_tracula/diffusion/elmo.2008/orig INFO: Scanning for Series Number 17 Scanning Directory INFO: found 70 files in series INFO: loading series header info. RunNo = 16 WARNING: Run 1 appears to be truncated Files Found: 70, Files Expected (lRep+1): 120 FileName /home/biba1/testing_tracula/diffusion/elmo.2008/orig/97000-000017-000001.dcm Identification NumarisVer syngo MR B15 ScannerModel TrioTim PatientName CON04_07172008 Date and time StudyDate 20080717 StudyTime 082602.097000 SeriesTime 091538.382000 AcqTime 091309.512500 Acquisition parameters PulseSeq ep_b0#1 Protocol DTI PhEncDir COL EchoNo 1 FlipAngle 90 EchoTime 84 InversionTime -1 RepetitionTime 9850 PhEncFOV 237 ReadoutFOV 237 Image information RunNo 16 SeriesNo 17 ImageNo 1 NImageRows 1152 NImageCols 1152 NFrames 70 SliceArraylSize 79 IsMosaic 1 ImgPos 1042.7820 1078.5270 242.5410 VolRes 1.8516 1.8516 1.8500 VolDim 128 128 79 Vc -0.9997 -0.0232 -0.0095 Vr 0.0249 -0.9576 -0.2870 Vs -0.0024 -0.2872 0.9579 VolCenter 0.0000 0.0000 0.0000 TransferSyntaxUID 1.2.840.10008.1.2.1 INFO: sorting. INFO: (128 128 79), nframes = 70, ismosaic=1 Could not parse NUMARIS version string syngo MR B15 found in dicom tag 18,1020 (len = 3 != 6) Repetition Time = 9850, TR = 9850 ms PE Dir COL COL AutoAlign matrix detected AutoAlign Matrix --------------------- 0.99969 -0.02379 0.00778 -0.14012; 0.02316 0.99706 0.07309 -9.34992; -0.00949 -0.07288 0.99730 -12.79552; 0.00000 0.00000 0.00000 1.00000; This looks like an MGH DTI volume MGH DTI SeqPack Info 0 ep_b0#1 0.000000 1 1 ep_b0#2 0.000000 2 2 ep_b0#3 0.000000 3 3 ep_b0#4 0.000000 4 4 ep_b0#5 0.000000 5 5 ep_b0#6 0.000000 6 6 ep_b0#7 0.000000 7 7 ep_b0#8 0.000000 8 8 ep_b0#9 0.000000 9 9 ep_b0#10 0.000000 10 10 ep_b700#1 700.000000 1 11 ep_b700#2 700.000000 2 12 ep_b700#3 700.000000 3 13 ep_b700#4 700.000000 4 14 ep_b700#5 700.000000 5 15 ep_b700#6 700.000000 6 16 ep_b700#7 700.000000 7 17 ep_b700#8 700.000000 8 18 ep_b700#9 700.000000 9 19 ep_b700#10 700.000000 10 20 ep_b700#11 700.000000 11 21 ep_b700#12 700.000000 12 22 ep_b700#13 700.000000 13 23 ep_b700#14 700.000000 14 24 ep_b700#15 700.000000 15 25 ep_b700#16 700.000000 16 26 ep_b700#17 700.000000 17 27 ep_b700#18 700.000000 18 28 ep_b700#19 700.000000 19 29 ep_b700#20 700.000000 20 30 ep_b700#21 700.000000 21 31 ep_b700#22 700.000000 22 32 ep_b700#23 700.000000 23 33 ep_b700#24 700.000000 24 34 ep_b700#25 700.000000 25 35 ep_b700#26 700.000000 26 36 ep_b700#27 700.000000 27 37 ep_b700#28 700.000000 28 38 ep_b700#29 700.000000 29 39 ep_b700#30 700.000000 30 40 ep_b700#31 700.000000 31 41 ep_b700#32 700.000000 32 42 ep_b700#33 700.000000 33 43 ep_b700#34 700.000000 34 44 ep_b700#35 700.000000 35 45 ep_b700#36 700.000000 36 46 ep_b700#37 700.000000 37 47 ep_b700#38 700.000000 38 48 ep_b700#39 700.000000 39 49 ep_b700#40 700.000000 40 50 ep_b700#41 700.000000 41 51 ep_b700#42 700.000000 42 52 ep_b700#43 700.000000 43 53 ep_b700#44 700.000000 44 54 ep_b700#45 700.000000 45 55 ep_b700#46 700.000000 46 56 ep_b700#47 700.000000 47 57 ep_b700#48 700.000000 48 58 ep_b700#49 700.000000 49 59 ep_b700#50 700.000000 50 60 ep_b700#51 700.000000 51 61 ep_b700#52 700.000000 52 62 ep_b700#53 700.000000 53 63 ep_b700#54 700.000000 54 64 ep_b700#55 700.000000 55 65 ep_b700#56 700.000000 56 66 ep_b700#57 700.000000 57 67 ep_b700#58 700.000000 58 68 ep_b700#59 700.000000 59 69 ep_b700#60 700.000000 60 bValue = 700 nB0 = 10 nDir = 60 GradFile /apps/freesurfer/diffusion/mgh-dti-seqpack/gradient_mgh_dti60.gdt FileName /home/biba1/testing_tracula/diffusion/elmo.2008/orig/97000-000017-000070.dcm Identification NumarisVer syngo MR B15 ScannerModel TrioTim PatientName CON04_07172008 Date and time StudyDate 20080717 StudyTime 082602.097000 SeriesTime 091538.382000 AcqTime 092431.892500 Acquisition parameters PulseSeq ep_b700#60 Protocol DTI PhEncDir COL EchoNo 1 FlipAngle 90 EchoTime 84 InversionTime -1 RepetitionTime 9850 PhEncFOV 237 ReadoutFOV 237 Image information RunNo 16 SeriesNo 17 ImageNo 70 NImageRows 1152 NImageCols 1152 NFrames 70 SliceArraylSize 79 IsMosaic 1 ImgPos 1042.7820 1078.5270 242.5410 VolRes 1.8516 1.8516 1.8500 VolDim 128 128 79 Vc -0.9997 -0.0232 -0.0095 Vr 0.0249 -0.9576 -0.2870 Vs -0.0024 -0.2872 0.9579 VolCenter 0.0000 0.0000 0.0000 TransferSyntaxUID 1.2.840.10008.1.2.1 UseSliceScaleFactor 0 (slice 0: 1) sagrev = 0, correv =0, trarev = 0 Vs = -0.00244356 -0.287158 0.95788 INFO: no Siemens slice order reversal detected (good!). TR=9850.00, TE=84.00, TI=-1.00, flip angle=90.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (0.0249093, -0.957603, -0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz... crypt_gkey = FS0o291M9zb7k Saving bvals and bvecs mri_probedicom --i /home/biba1/testing_tracula/diffusion/elmo.2008/orig/97000-000017-000001.dcm > /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dcminfo.dat mv -f /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs.tmp /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.mghdti.bvecs mv -f /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvals.tmp /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.mghdti.bvals flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LPS INFO: input image determinant is 6.34232 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz x -y z /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig_flip.nii.gz INFO: left-right orientation was flipped by fslswapdim fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig_flip.nii.gz INFO: found /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig_flip.mghdti.bvecs /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs mv -f /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig_flip.mghdti.bvals /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvals eddy_correct /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig_flip.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz 0 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0000 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0001 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0002 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0003 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0004 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0005 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0006 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0007 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0008 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0009 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0010 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0011 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0012 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0013 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0014 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0015 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0016 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0017 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0018 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0019 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0020 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0021 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0022 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0023 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0024 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0025 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0026 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0027 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0028 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0029 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0030 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0031 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0032 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0033 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0034 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0035 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0036 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0037 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0038 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0039 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0040 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0041 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0042 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0043 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0044 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0045 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0046 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0047 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0048 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0049 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0050 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0051 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0052 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0053 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0054 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0055 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0056 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0057 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0058 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0059 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0060 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0061 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0062 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0063 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0064 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0065 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0066 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0067 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0068 processing /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_tmp0069 mv -f /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs.norot xfmrot /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.ecclog /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs.norot /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs ln -sf /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/data.nii.gz mri_convert --frame 0 1 2 3 4 5 6 7 8 9 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz mri_convert --frame 0 1 2 3 4 5 6 7 8 9 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... crypt_gkey = FS0o291M9zb7k TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frames 0 1 2 3 4 5 6 7 8 9 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz... crypt_gkey = FS0o291M9zb7k mri_concat --i /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz --mean --o /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz ninputs = 1 Checking inputs nframestot = 10 Allocing output Done allocing nframes = 10 Computing mean across frames Writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz bet /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb_brain_mask.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff #------------------------------------- #@# Image quality assessment Fri Mar 4 17:55:47 MST 2016 /apps/freesurfer/bin/dmri_motion --dwi /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz --mat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.ecclog --bval /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvals --out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_motion.txt cwd /home/biba1/testing_tracula/diffusion cmdline /apps/freesurfer/bin/dmri_motion --dwi /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz --mat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.ecclog --bval /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvals --out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_motion.txt sysname Linux hostname BIBAStation1 machine x86_64 user biba1 Output motion measure file: /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_motion.txt Input transform file: /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.ecclog Input DWI file: /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz Input b-value table: /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvals Low-b image intensity threshold: 100 Nominal diffusivity: 0.001 Loading volume-to-baseline affine transformations Computing between-volume head motion measures INFO: Processed transforms for 70 volumes Loading DWI volume series from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_orig.nii.gz Loading b-value table from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvals Computing within-volume head motion measures Done in 4.803 sec. dmri_motion done #------------------------------------- #@# Intra-subject registration Fri Mar 4 17:55:52 MST 2016 mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/brain.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/brain.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ reading from /home/biba1/testing_tracula/recons/elmo.2008/mri/brain.mgz... crypt_gkey = FS0o291M9zb7k TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz... crypt_gkey = FS0o291M9zb7k flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz tkregister2 --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz --targ /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2anat.mat --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2anatorig.dat tkregister_tcl /apps/freesurfer/tktools/tkregister2.tcl target volume /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz movable volume /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz reg file /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 -0.000; -0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 -0.000; -0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 -0.000; 0.000 -0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2anatorig.mat -inverse /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2anat.mat Log file is /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.log Fri Mar 4 17:55:53 MST 2016 setenv SUBJECTS_DIR /home/biba1/testing_tracula/recons cd /home/biba1/testing_tracula/diffusion /apps/freesurfer/bin/bbregister --s elmo.2008 --init-fsl --dti --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --fslmat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /apps/freesurfer mri_convert /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii mri_convert /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz... crypt_gkey = FS0o291M9zb7k TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii... crypt_gkey = FS0o291M9zb7k fslregister --s elmo.2008 --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister --dof 6 --fsvol brainmask.mgz Log file is /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat.fslregister.log Fri Mar 4 17:55:59 MST 2016 --s elmo.2008 --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister --dof 6 --fsvol brainmask.mgz $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $ BIBAStation1 Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /home/biba1/testing_tracula/diffusion mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/brainmask.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/refvol.fslregister.nii mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/brainmask.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ reading from /home/biba1/testing_tracula/recons/elmo.2008/mri/brainmask.mgz... crypt_gkey = FS0o291M9zb7k TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/refvol.fslregister.nii... crypt_gkey = FS0o291M9zb7k -------------------------------------- /home/biba1/testing_tracula/diffusion mri_convert /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/movvol.fslregister.nii --frame 0 mri_convert /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ reading from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii... crypt_gkey = FS0o291M9zb7k TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999687, -0.0231588, -0.00949289) j_ras = (-0.0249093, 0.957603, 0.287012) k_ras = (-0.00244356, -0.287158, 0.95788) keeping frame 0 writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/movvol.fslregister.nii... crypt_gkey = FS0o291M9zb7k Mov determinant is -6.34232 /home/biba1/testing_tracula/diffusion tkregister2_cmdl --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/movvol.fslregister.nii --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/reg0.15941.dat --regheader --fslregout /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat.fsl.mat0 --s elmo.2008 --noedit tkregister_tcl /apps/freesurfer/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/movvol.fslregister.nii reg file /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/reg0.15941.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/biba1/testing_tracula/recons/elmo.2008/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/movvol.fslregister.nii Tmov: -------------------- -1.852 0.000 0.000 118.500; 0.000 0.000 1.850 -73.075; 0.000 -1.852 0.000 118.500; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.023 0.009 -0.450; -0.002 -0.287 0.958 -0.925; 0.025 -0.958 -0.287 1.852; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.023 0.009 -0.450; -0.002 -0.287 0.958 -0.925; 0.025 -0.958 -0.287 1.852; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2008 RegMat --------------------------- 1.000 0.023 0.009 -0.450; -0.002 -0.287 0.958 -0.925; 0.025 -0.958 -0.287 1.852; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -6.34232, ref det = -1 Fri Mar 4 17:56:05 MST 2016 /home/biba1/testing_tracula/diffusion flirt.fsl -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/refvol.fslregister.nii -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat.fsl.mat0 Fri Mar 4 17:56:13 MST 2016 /home/biba1/testing_tracula/diffusion flirt.fsl -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/refvol.fslregister.nii -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat.fsl.mat -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/fslregister/fslmat0.trans.mat -schedule /apps/freesurfer/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s elmo.2008 --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat --fslreg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat.fsl.mat --noedit tkregister_tcl /apps/freesurfer/tktools/tkregister2.tcl ---- FSL registration matrix -------- 1.000 0.026 0.002 6.263; 0.010 -0.289 -0.957 223.164; -0.025 0.957 -0.289 38.787; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii reg file /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/biba1/testing_tracula/recons/elmo.2008/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii Tmov: -------------------- -1.852 0.000 0.000 118.500; 0.000 0.000 1.850 -73.075; 0.000 -1.852 0.000 118.500; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -6.34232, ref det = -1 ---- Input registration matrix (computed) -------- 1.000 0.025 0.010 -0.073; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.025 0.010 -0.073; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2008 RegMat --------------------------- 1.000 0.025 0.010 -0.073; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; (standard_in) 1: syntax error Started at Fri Mar 4 17:55:59 MST 2016 Ended at Fri Mar 4 17:56:31 MST 2016 fslregister Done To check results, run: tkregister2 --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat --surf orig mri_segreg --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii --init-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat --out-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/biba1/testing_tracula/recons cd /home/biba1/testing_tracula/diffusion mri_segreg --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii --init-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat --out-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname BIBAStation1 machine x86_64 user biba1 movvol /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii regfile /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.init.dat subject elmo.2008 dof 6 outregfile /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1457175408 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.025 0.010 -0.073; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.014531 1 -25.0 -25.0 25.0 1.049355 2 -25.0 25.0 -25.0 1.022159 3 -25.0 25.0 25.0 1.023649 4 25.0 -25.0 -25.0 1.000862 5 25.0 -25.0 25.0 0.979032 6 25.0 25.0 -25.0 1.042214 7 25.0 25.0 25.0 1.016988 REL: 8 0.305262 8.148790 1.018599 rel = 0.299689 Initial costs ---------------- Number of surface hits 2755 WM Intensity 198.2200 +/- 62.8976 Ctx Intensity 266.6978 +/- 90.6028 Pct Contrast 27.5615 +/- 30.4164 Cost 0.3053 RelCost 0.2997 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9583 0.9583 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9295 0.9295 0.0 5 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.8943 0.8943 0.0 32 -4.0000 -4.0000 0.0000 -4.0000 0.0000 4.0000 0.8826 0.8826 0.0 33 -4.0000 -4.0000 0.0000 -4.0000 4.0000 -4.0000 0.8456 0.8456 0.0 117 -4.0000 0.0000 0.0000 0.0000 -4.0000 -4.0000 0.8445 0.8445 0.0 118 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.0000 0.8160 0.8160 0.0 121 -4.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.8158 0.8158 0.0 123 -4.0000 0.0000 0.0000 0.0000 4.0000 -4.0000 0.8113 0.8113 0.0 124 -4.0000 0.0000 0.0000 0.0000 4.0000 0.0000 0.7803 0.7803 0.0 274 0.0000 -4.0000 0.0000 -4.0000 0.0000 0.0000 0.7062 0.7062 0.0 355 0.0000 0.0000 0.0000 -4.0000 0.0000 0.0000 0.5571 0.5571 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3053 0.3053 0.0 Brute Force -------------------------- Min cost was 0.305262 Number of iterations 729 Search time 0.925000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 -0.242 0.000 0.000 0.000 0.000 0.000 0.2959818198 8 -0.266 0.000 0.000 0.000 0.000 0.000 0.2952880685 9 -0.401 0.000 0.000 0.000 0.000 0.000 0.2937528638 10 -0.388 0.000 0.000 0.000 0.000 0.000 0.2934885640 12 -0.375 0.000 0.000 0.000 0.000 0.000 0.2933744018 16 -0.375 1.000 0.000 0.000 0.000 0.000 0.2657116307 24 -0.375 0.948 0.000 0.000 0.000 0.000 0.2652233375 26 -0.375 0.956 0.000 0.000 0.000 0.000 0.2651622164 27 -0.375 0.973 0.000 0.000 0.000 0.000 0.2649651030 28 -0.375 0.983 0.000 0.000 0.000 0.000 0.2649107243 34 -0.375 0.983 1.000 0.000 0.000 0.000 0.2563620461 38 -0.375 0.983 0.618 0.000 0.000 0.000 0.2485332972 40 -0.375 0.983 0.610 0.000 0.000 0.000 0.2485035402 41 -0.375 0.983 0.609 0.000 0.000 0.000 0.2485020159 47 -0.375 0.983 0.609 -0.618 0.000 0.000 0.2172370817 49 -0.375 0.983 0.609 -0.696 0.000 0.000 0.2164862311 52 -0.375 0.983 0.609 -0.666 0.000 0.000 0.2164593153 54 -0.375 0.983 0.609 -0.678 0.000 0.000 0.2164510439 65 -0.375 0.983 0.609 -0.678 -0.086 0.000 0.2148034744 67 -0.375 0.983 0.609 -0.678 -0.094 0.000 0.2147296066 68 -0.375 0.983 0.609 -0.678 -0.105 0.000 0.2147008399 69 -0.375 0.983 0.609 -0.678 -0.104 0.000 0.2147001582 77 -0.375 0.983 0.609 -0.678 -0.104 -0.123 0.2115082125 83 -0.375 0.983 0.609 -0.678 -0.104 -0.122 0.2115059362 84 -0.375 0.983 0.609 -0.678 -0.104 -0.121 0.2115047375 93 -0.238 0.983 0.609 -0.678 -0.104 -0.121 0.2083513991 95 -0.278 0.983 0.609 -0.678 -0.104 -0.121 0.2076293846 97 -0.270 0.983 0.609 -0.678 -0.104 -0.121 0.2075865873 104 -0.270 0.365 0.609 -0.678 -0.104 -0.121 0.1945243533 106 -0.270 0.288 0.609 -0.678 -0.104 -0.121 0.1944011941 107 -0.270 0.296 0.609 -0.678 -0.104 -0.121 0.1943620772 108 -0.270 0.319 0.609 -0.678 -0.104 -0.121 0.1942762037 118 -0.270 0.319 0.629 -0.678 -0.104 -0.121 0.1937201076 120 -0.270 0.319 0.665 -0.678 -0.104 -0.121 0.1934149922 122 -0.270 0.319 0.668 -0.678 -0.104 -0.121 0.1934142626 129 -0.270 0.319 0.668 -1.296 -0.104 -0.121 0.1766854431 131 -0.270 0.319 0.668 -1.138 -0.104 -0.121 0.1761203906 132 -0.270 0.319 0.668 -1.190 -0.104 -0.121 0.1757428088 134 -0.270 0.319 0.668 -1.180 -0.104 -0.121 0.1756754913 136 -0.270 0.319 0.668 -1.174 -0.104 -0.121 0.1756543784 137 -0.270 0.319 0.668 -1.173 -0.104 -0.121 0.1756539058 145 -0.270 0.319 0.668 -1.173 -0.169 -0.121 0.1742544627 146 -0.270 0.319 0.668 -1.173 -0.268 -0.121 0.1740736739 148 -0.270 0.319 0.668 -1.173 -0.226 -0.121 0.1732768874 150 -0.270 0.319 0.668 -1.173 -0.228 -0.121 0.1732751542 158 -0.270 0.319 0.668 -1.173 -0.228 0.040 0.1715674224 160 -0.270 0.319 0.668 -1.173 -0.228 0.011 0.1715366692 162 -0.270 0.319 0.668 -1.173 -0.228 0.022 0.1715167743 164 -0.270 0.319 0.668 -1.173 -0.228 0.023 0.1715163212 175 -0.209 0.319 0.668 -1.173 -0.228 0.023 0.1701363117 176 -0.178 0.319 0.668 -1.173 -0.228 0.023 0.1695409990 179 -0.171 0.319 0.668 -1.173 -0.228 0.023 0.1694314745 180 -0.165 0.319 0.668 -1.173 -0.228 0.023 0.1693809239 181 -0.162 0.319 0.668 -1.173 -0.228 0.023 0.1693792636 183 -0.163 0.319 0.668 -1.173 -0.228 0.023 0.1693781736 191 -0.163 0.184 0.668 -1.173 -0.228 0.023 0.1667931009 192 -0.163 0.169 0.668 -1.173 -0.228 0.023 0.1664662845 194 -0.163 0.099 0.668 -1.173 -0.228 0.023 0.1655251508 196 -0.163 0.112 0.668 -1.173 -0.228 0.023 0.1654283774 198 -0.163 0.114 0.668 -1.173 -0.228 0.023 0.1654250945 207 -0.163 0.114 0.652 -1.173 -0.228 0.023 0.1652163118 208 -0.163 0.114 0.577 -1.173 -0.228 0.023 0.1650214715 211 -0.163 0.114 0.585 -1.173 -0.228 0.023 0.1650169357 212 -0.163 0.114 0.586 -1.173 -0.228 0.023 0.1650167777 220 -0.163 0.114 0.586 -1.192 -0.228 0.023 0.1649294219 222 -0.163 0.114 0.586 -1.187 -0.228 0.023 0.1649172512 223 -0.163 0.114 0.586 -1.186 -0.228 0.023 0.1649168963 231 -0.163 0.114 0.586 -1.186 -0.248 0.023 0.1648001187 234 -0.163 0.114 0.586 -1.186 -0.249 0.023 0.1647996857 236 -0.163 0.114 0.586 -1.186 -0.250 0.023 0.1647996699 245 -0.163 0.114 0.586 -1.186 -0.250 0.000 0.1647223281 247 -0.163 0.114 0.586 -1.186 -0.250 0.006 0.1647107874 249 -0.163 0.114 0.586 -1.186 -0.250 0.007 0.1647104800 258 -0.190 0.114 0.586 -1.186 -0.250 0.007 0.1641551790 260 -0.221 0.114 0.586 -1.186 -0.250 0.007 0.1638722544 262 -0.214 0.114 0.586 -1.186 -0.250 0.007 0.1638266674 274 -0.214 0.112 0.586 -1.186 -0.250 0.007 0.1638251034 283 -0.214 0.112 0.550 -1.186 -0.250 0.007 0.1637760503 284 -0.214 0.112 0.561 -1.186 -0.250 0.007 0.1637522504 286 -0.214 0.112 0.560 -1.186 -0.250 0.007 0.1637518283 288 -0.214 0.112 0.559 -1.186 -0.250 0.007 0.1637518041 296 -0.214 0.112 0.559 -1.183 -0.250 0.007 0.1637257726 299 -0.214 0.112 0.559 -1.178 -0.250 0.007 0.1637169425 311 -0.214 0.112 0.559 -1.178 -0.248 0.007 0.1637155003 319 -0.214 0.112 0.559 -1.178 -0.248 -0.053 0.1626956352 321 -0.214 0.112 0.559 -1.178 -0.248 -0.113 0.1623177931 324 -0.214 0.112 0.559 -1.178 -0.248 -0.123 0.1622956642 326 -0.214 0.112 0.559 -1.178 -0.248 -0.126 0.1622940645 327 -0.214 0.112 0.559 -1.178 -0.248 -0.127 0.1622938756 337 -0.187 0.112 0.559 -1.178 -0.248 -0.127 0.1622380325 339 -0.197 0.112 0.559 -1.178 -0.248 -0.127 0.1621905453 348 -0.197 0.115 0.559 -1.178 -0.248 -0.127 0.1621677085 350 -0.197 0.125 0.559 -1.178 -0.248 -0.127 0.1621255884 351 -0.197 0.124 0.559 -1.178 -0.248 -0.127 0.1621254499 361 -0.197 0.124 0.554 -1.178 -0.248 -0.127 0.1621211021 370 -0.197 0.124 0.554 -1.188 -0.248 -0.127 0.1620581163 372 -0.197 0.124 0.554 -1.192 -0.248 -0.127 0.1620502378 383 -0.197 0.124 0.554 -1.192 -0.235 -0.127 0.1620134835 384 -0.197 0.124 0.554 -1.192 -0.239 -0.127 0.1620008877 396 -0.197 0.124 0.554 -1.192 -0.239 -0.136 0.1619719752 408 -0.195 0.124 0.554 -1.192 -0.239 -0.136 0.1619637144 409 -0.192 0.124 0.554 -1.192 -0.239 -0.136 0.1619600374 411 -0.193 0.124 0.554 -1.192 -0.239 -0.136 0.1619586533 431 -0.193 0.124 0.558 -1.192 -0.239 -0.136 0.1619570700 432 -0.193 0.124 0.556 -1.192 -0.239 -0.136 0.1619565319 440 -0.193 0.124 0.556 -1.198 -0.239 -0.136 0.1619539275 441 -0.193 0.124 0.556 -1.197 -0.239 -0.136 0.1619514639 442 -0.193 0.124 0.556 -1.196 -0.239 -0.136 0.1619511840 454 -0.193 0.124 0.556 -1.196 -0.240 -0.136 0.1619510776 463 -0.193 0.124 0.556 -1.196 -0.240 -0.144 0.1619503936 464 -0.193 0.124 0.556 -1.196 -0.240 -0.140 0.1619447988 477 -0.191 0.124 0.556 -1.196 -0.240 -0.140 0.1619443074 497 -0.191 0.124 0.560 -1.196 -0.240 -0.140 0.1619418992 529 -0.191 0.124 0.559 -1.196 -0.240 -0.141 0.1619409720 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 1.000413 1 -25.0 -25.0 25.0 1.021642 2 -25.0 25.0 -25.0 1.001194 3 -25.0 25.0 25.0 1.011474 4 25.0 -25.0 -25.0 1.005350 5 25.0 -25.0 25.0 0.981060 6 25.0 25.0 -25.0 1.044049 7 25.0 25.0 25.0 1.009886 REL: 8 0.161941 8.075069 1.009384 rel = 0.160436 Number of iterations 6 Min cost was 0.161941 Number of FunctionCalls 531 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.685000 sec Parameters at optimum (transmm) -0.19147 0.12449 0.55892 Parameters at optimum (rotdeg) -1.19569 -0.24008 -0.14144 Final costs ---------------- Number of surface hits 2755 WM Intensity 193.0911 +/- 61.8847 Ctx Intensity 266.2914 +/- 78.2016 Pct Contrast 30.9388 +/- 26.9342 Cost 0.1619 RelCost 0.2997 Reg at min cost was 1.000 0.028 0.013 -0.294; -0.004 -0.309 0.951 -7.385; 0.031 -0.951 -0.309 3.098; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/bbr.pass1.dat, type = 14 Original Reg 1.000 0.025 0.010 -0.073; -0.002 -0.289 0.957 -7.561; 0.026 -0.957 -0.289 2.382; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 -0.003 -0.004 0.221; 0.002 0.020 0.006 -0.176; -0.004 -0.006 0.020 -0.716; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 1.153810 Computing change in rh position Surface RMS Diff (mm) 1.196156 2.435864 mri_segreg done mri_segreg --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii --init-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/bbr.pass1.dat --out-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/biba1/testing_tracula/recons cd /home/biba1/testing_tracula/diffusion mri_segreg --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii --init-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/bbr.pass1.dat --out-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname BIBAStation1 machine x86_64 user biba1 movvol /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/template.nii regfile /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/tmp.bbregister.15905/bbr.pass1.dat subject elmo.2008 dof 6 outregfile /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1457920480 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.028 0.013 -0.294; -0.004 -0.309 0.951 -7.385; 0.031 -0.951 -0.309 3.098; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.005088 1 -25.0 -25.0 25.0 1.029713 2 -25.0 25.0 -25.0 1.023469 3 -25.0 25.0 25.0 1.013151 4 25.0 -25.0 -25.0 1.011980 5 25.0 -25.0 25.0 1.005450 6 25.0 25.0 -25.0 1.030726 7 25.0 25.0 25.0 1.020579 REL: 8 0.187645 8.140155 1.017519 rel = 0.184414 Initial costs ---------------- Number of surface hits 275274 WM Intensity 193.5719 +/- 61.5246 Ctx Intensity 266.4656 +/- 79.4076 Pct Contrast 30.8051 +/- 26.8174 Cost 0.1876 RelCost 0.1844 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1790 0.1790 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1767 0.1767 0.0 2 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.1760 0.1760 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.1744 0.1744 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.1744 0.1744 0.0 6 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.1729 0.1729 0.0 13 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.1718 0.1718 0.0 16 -0.1000 -0.1000 -0.1000 0.0000 0.1000 0.0000 0.1717 0.1717 0.0 22 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.1714 0.1714 0.0 34 -0.1000 -0.1000 0.0000 -0.1000 0.1000 0.0000 0.1710 0.1710 0.0 38 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1000 0.1701 0.1701 0.0 40 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.1674 0.1674 0.0 41 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.1000 0.1672 0.1672 0.0 68 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.1000 0.1669 0.1669 0.0 121 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1660 0.1660 0.0 149 -0.1000 0.0000 0.1000 0.0000 0.0000 0.1000 0.1659 0.1659 0.0 158 -0.1000 0.0000 0.1000 0.1000 0.0000 0.1000 0.1654 0.1654 0.0 337 0.0000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.1652 0.1652 0.0 363 0.0000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.1639 0.1639 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1619 0.1619 0.0 Brute Force -------------------------- Min cost was 0.161941 Number of iterations 729 Search time 0.930000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 0.104 0.000 0.000 0.000 0.000 0.000 0.1869059029 8 0.095 0.000 0.000 0.000 0.000 0.000 0.1868953030 17 0.095 0.020 0.000 0.000 0.000 0.000 0.1868411437 18 0.095 0.025 0.000 0.000 0.000 0.000 0.1868409693 19 0.095 0.023 0.000 0.000 0.000 0.000 0.1868404716 27 0.095 0.023 0.088 0.000 0.000 0.000 0.1865343647 29 0.095 0.023 0.084 0.000 0.000 0.000 0.1865331408 30 0.095 0.023 0.083 0.000 0.000 0.000 0.1865330490 38 0.095 0.023 0.083 -0.067 0.000 0.000 0.1862617708 40 0.095 0.023 0.083 -0.065 0.000 0.000 0.1862614762 49 0.095 0.023 0.083 -0.065 0.029 0.000 0.1861564849 50 0.095 0.023 0.083 -0.065 0.036 0.000 0.1861452073 51 0.095 0.023 0.083 -0.065 0.049 0.000 0.1861445294 53 0.095 0.023 0.083 -0.065 0.043 0.000 0.1861406522 55 0.095 0.023 0.083 -0.065 0.044 0.000 0.1861405598 64 0.095 0.023 0.083 -0.065 0.044 0.149 0.1848208198 65 0.095 0.023 0.083 -0.065 0.044 0.154 0.1848044655 66 0.095 0.023 0.083 -0.065 0.044 0.190 0.1847963168 68 0.095 0.023 0.083 -0.065 0.044 0.174 0.1847777727 70 0.095 0.023 0.083 -0.065 0.044 0.175 0.1847777203 80 0.094 0.023 0.083 -0.065 0.044 0.175 0.1847758356 81 0.083 0.023 0.083 -0.065 0.044 0.175 0.1847742877 83 0.088 0.023 0.083 -0.065 0.044 0.175 0.1847703814 93 0.088 0.031 0.083 -0.065 0.044 0.175 0.1847656966 103 0.088 0.031 0.082 -0.065 0.044 0.175 0.1847655704 104 0.088 0.031 0.081 -0.065 0.044 0.175 0.1847655267 114 0.088 0.031 0.081 -0.069 0.044 0.175 0.1847641940 116 0.088 0.031 0.081 -0.070 0.044 0.175 0.1847639592 125 0.088 0.031 0.081 -0.070 0.001 0.175 0.1845951067 127 0.088 0.031 0.081 -0.070 0.008 0.175 0.1845866291 128 0.088 0.031 0.081 -0.070 0.009 0.175 0.1845865495 138 0.088 0.031 0.081 -0.070 0.009 0.176 0.1845865068 147 0.111 0.031 0.081 -0.070 0.009 0.176 0.1845459163 148 0.109 0.031 0.081 -0.070 0.009 0.176 0.1845431372 149 0.105 0.031 0.081 -0.070 0.009 0.176 0.1845410928 159 0.105 0.028 0.081 -0.070 0.009 0.176 0.1845400265 168 0.105 0.028 0.090 -0.070 0.009 0.176 0.1845199749 169 0.105 0.028 0.100 -0.070 0.009 0.176 0.1845197639 170 0.105 0.028 0.095 -0.070 0.009 0.176 0.1845174444 171 0.105 0.028 0.096 -0.070 0.009 0.176 0.1845174343 188 0.105 0.028 0.096 -0.070 -0.008 0.176 0.1844934685 189 0.105 0.028 0.096 -0.070 -0.007 0.176 0.1844919230 190 0.105 0.028 0.096 -0.070 -0.004 0.176 0.1844900765 192 0.105 0.028 0.096 -0.070 -0.005 0.176 0.1844898042 202 0.105 0.028 0.096 -0.070 -0.005 0.179 0.1844887573 212 0.117 0.028 0.096 -0.070 -0.005 0.179 0.1844801702 213 0.115 0.028 0.096 -0.070 -0.005 0.179 0.1844787770 214 0.113 0.028 0.096 -0.070 -0.005 0.179 0.1844778758 216 0.112 0.028 0.096 -0.070 -0.005 0.179 0.1844778690 225 0.112 0.032 0.096 -0.070 -0.005 0.179 0.1844776084 226 0.112 0.030 0.096 -0.070 -0.005 0.179 0.1844773157 236 0.112 0.030 0.098 -0.070 -0.005 0.179 0.1844771339 246 0.112 0.030 0.098 -0.069 -0.005 0.179 0.1844769485 247 0.112 0.030 0.098 -0.068 -0.005 0.179 0.1844769203 256 0.112 0.030 0.098 -0.068 -0.006 0.179 0.1844765200 267 0.112 0.030 0.098 -0.068 -0.006 0.180 0.1844764550 275 0.115 0.031 0.098 -0.067 -0.007 0.180 0.1844758033 276 0.114 0.031 0.098 -0.067 -0.007 0.180 0.1844757751 279 0.114 0.031 0.098 -0.067 -0.007 0.180 0.1844755731 291 0.114 0.031 0.098 -0.067 -0.007 0.179 0.1844755049 302 0.114 0.032 0.098 -0.067 -0.007 0.179 0.1844752640 312 0.114 0.032 0.097 -0.067 -0.007 0.179 0.1844752414 345 0.114 0.032 0.097 -0.067 -0.007 0.179 0.1844752164 346 0.114 0.032 0.097 -0.067 -0.007 0.179 0.1844751728 348 0.114 0.032 0.097 -0.067 -0.007 0.179 0.1844751323 Powell done niters = 5 Computing relative cost 0 -25.0 -25.0 -25.0 1.005101 1 -25.0 -25.0 25.0 1.030980 2 -25.0 25.0 -25.0 1.023480 3 -25.0 25.0 25.0 1.012638 4 25.0 -25.0 -25.0 1.010300 5 25.0 -25.0 25.0 1.004664 6 25.0 25.0 -25.0 1.031980 7 25.0 25.0 25.0 1.020221 REL: 8 0.184475 8.139363 1.017420 rel = 0.181317 Number of iterations 5 Min cost was 0.184475 Number of FunctionCalls 414 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 26.529000 sec Parameters at optimum (transmm) 0.11440 0.03209 0.09692 Parameters at optimum (rotdeg) -0.06713 -0.00668 0.17908 Final costs ---------------- Number of surface hits 275274 WM Intensity 193.3440 +/- 60.9451 Ctx Intensity 266.5958 +/- 79.0254 Pct Contrast 30.9770 +/- 26.6510 Cost 0.1845 RelCost 0.1844 Reg at min cost was 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.350; 0.031 -0.950 -0.310 3.203; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.028 0.013 -0.294; -0.004 -0.309 0.951 -7.385; 0.031 -0.951 -0.309 3.098; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 -0.001 0.003 -0.137; -0.003 0.001 0.000 -0.035; -0.000 -0.000 0.001 -0.106; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.186917 Computing change in rh position Surface RMS Diff (mm) 0.206364 0.379573 mri_segreg done tkregister2_cmdl --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /apps/freesurfer/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz reg file /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.350; 0.031 -0.950 -0.310 3.203; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /home/biba1/testing_tracula/recons/elmo.2008/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz Tmov: -------------------- -1.852 0.000 0.000 118.500; 0.000 0.000 1.850 -73.075; 0.000 -1.852 0.000 118.500; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.350; 0.031 -0.950 -0.310 3.203; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2008 RegMat --------------------------- 1.000 0.029 0.010 -0.157; -0.001 -0.310 0.951 -7.350; 0.031 -0.950 -0.310 3.203; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -6.34232, ref det = -1 Cleaning up Started at Fri Mar 4 17:55:53 MST 2016 Ended at Fri Mar 4 17:57:20 MST 2016 BBR-Run-Time-Sec 87 bbregister Done To check results, run: tkregister2 --mov /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.mat -inverse /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -concat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2diff.bbr.mat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2anatorig.mat convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2anat.bbr.mat -inverse /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Fri Mar 4 17:57:20 MST 2016 flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_mni.nii.gz -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2anat.mat -inverse /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat -concat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2diff.bbr.mat -inverse /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2mni.mat -concat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2anatorig.mat -inverse /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Fri Mar 4 17:59:01 MST 2016 mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/biba1/testing_tracula/diffusion cmdline mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname BIBAStation1 machine x86_64 user biba1 input /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 475560 values in range Counting number of voxels Found 475560 voxels in final mask mri_binarize done mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/biba1/testing_tracula/diffusion cmdline mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname BIBAStation1 machine x86_64 user biba1 input /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 505262 values in range Counting number of voxels Found 505262 voxels in final mask mri_binarize done mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/biba1/testing_tracula/diffusion cmdline mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname BIBAStation1 machine x86_64 user biba1 input /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 20984 values in range Counting number of voxels Found 20984 voxels in final mask mri_binarize done mri_aparc2aseg --s elmo.2008 --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/biba1/testing_tracula/recons subject elmo.2008 outvol /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /home/biba1/testing_tracula/recons/elmo.2008/surf/lh.white Reading lh pial surface /home/biba1/testing_tracula/recons/elmo.2008/surf/lh.pial Loading lh annotations from /home/biba1/testing_tracula/recons/elmo.2008/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /home/biba1/testing_tracula/recons/elmo.2008/surf/rh.white Reading rh pial surface /home/biba1/testing_tracula/recons/elmo.2008/surf/rh.pial Loading rh annotations from /home/biba1/testing_tracula/recons/elmo.2008/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/biba1/testing_tracula/recons/elmo.2008/mri/ribbon.mgz Loading filled from /home/biba1/testing_tracula/recons/elmo.2008/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /home/biba1/testing_tracula/recons/elmo.2008/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 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/home/biba1/testing_tracula/diffusion cmdline mri_binarize --i /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex.nii.gz sysname Linux hostname BIBAStation1 machine x86_64 user biba1 input /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 558497 values in range Counting number of voxels Found 558497 voxels in final mask mri_binarize done mri_binarize --i /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/biba1/testing_tracula/diffusion cmdline mri_binarize --i /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname BIBAStation1 machine x86_64 user biba1 input /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 835067 values in range Counting number of voxels Found 835067 voxels in final mask mri_binarize done mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 16 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/biba1/testing_tracula/diffusion cmdline mri_binarize --i /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz --match 16 --o /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname BIBAStation1 machine x86_64 user biba1 input /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 21025 values in range Counting number of voxels Found 21025 voxels in final mask mri_binarize done fslmaths /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz -add /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/Brain-Stem.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/brainmask.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/brainmask.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ reading from /home/biba1/testing_tracula/recons/elmo.2008/mri/brainmask.mgz... crypt_gkey = FS0o291M9zb7k TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz... crypt_gkey = FS0o291M9zb7k fslmaths /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/notventricles.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ reading from /home/biba1/testing_tracula/recons/elmo.2008/mri/aparc+aseg.mgz... crypt_gkey = FS0o291M9zb7k TR=2530.00, TE=1.70, TI=1200.00, flip angle=7.00 i_ras = (-1, -5.58794e-08, 6.98492e-08) j_ras = (1.35042e-07, 2.21189e-09, -1) k_ras = (-3.1665e-08, 1, -4.58385e-09) writing to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz... crypt_gkey = FS0o291M9zb7k fslmaths /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter++.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter++.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/notventricles.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/notventricles.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/notventricles.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/notventricles.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/cortex.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/cortex+2mm.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/cortex+2mm+bs.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/aparc+aseg.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/aparc+aseg+2mm.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/lowb.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz -k /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi_snr.txt flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lowb_brain_mask.nii.gz -ref /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/brain_anat_orig.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour ln -sf /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Fri Mar 4 18:02:43 MST 2016 dtifit -k /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dwi.nii.gz -m /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvecs -b /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/bvals -o /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit 0 128 0 128 0 79 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed 57 slices processed 58 slices processed 59 slices processed 60 slices processed 61 slices processed 62 slices processed 63 slices processed 64 slices processed 65 slices processed 66 slices processed 67 slices processed 68 slices processed 69 slices processed 70 slices processed 71 slices processed 72 slices processed 73 slices processed 74 slices processed 75 slices processed 76 slices processed 77 slices processed 78 slices processed flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_FA.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_L1.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_L2.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_L3.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_MD.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_MO.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat flirt -in /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_S0.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Fri Mar 4 18:02:56 MST 2016 /apps/freesurfer/bin/dmri_train --outdir /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.elmo.2008.14227.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_FA.nii.gz --cptdir /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc cwd /home/biba1/testing_tracula/diffusion cmdline /apps/freesurfer/bin/dmri_train --outdir /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.elmo.2008.14227.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_FA.nii.gz --cptdir /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff --reg /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc sysname Linux hostname BIBAStation1 machine x86_64 user biba1 Output directory: /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni Output directory in test subject's space: /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.elmo.2008.14227.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/dtifit_FA.nii.gz Loading affine registration from /home/biba1/testing_tracula/diffusion/elmo.2008/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 599 streamlines for straying off mask INFO: Rejected 78 streamlines for reversing direction INFO: Rejected 35 streamlines as length outliers INFO: Have 7720 total streamlines (min/mean/max length: 59/99/132) Loading segmentation from /apps/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4944 non-truncated streamlines (min/mean/max length: 59/99/132) INFO: Center of mass of start points: (98+/-3, 98+/-6, 39+/-12) INFO: Center of mass of midpoints: (112+/-3, 110+/-4, 78+/-7) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-6) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 38282 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0281392 INFO: Points where local peeks in curvature occur are 100 104 52 (curv = 0.0739372) 109 110 69 (curv = 0.0484531) 115 109 97 (curv = 0.0318118) 116 108 102 (curv = 0.0491033) 114 104 115 (curv = 0.0385678) 111 104 130 (curv = 0.0426496) INFO: Intermediate dominant points are 100 99 33 100 104 52 109 110 69 116 108 102 113 104 120 113 104 142 INFO: Final dominant points are 100 99 33 100 104 52 109 110 69 116 108 102 111 104 130 113 104 142 INFO: Selected control points are 100 99 33 100 105 52 109 110 70 115 108 102 111 103 129 113 104 142 INFO: Distances between consecutive points are 20 21 33 28 13 INFO: Selected control points in test subject's space are 69 58 8 69 60 18 74 61 27 77 58 43 75 54 56 77 53 63 INFO: Distances between consecutive points in test subject's space are 10 10 17 14 7 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 51.704 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 1100 streamlines for straying off mask INFO: Rejected 75 streamlines for reversing direction INFO: Rejected 31 streamlines as length outliers INFO: Have 8090 total streamlines (min/mean/max length: 58/98/139) Processing pathway 2 of 18... Matching streamline ends INFO: Have 4993 non-truncated streamlines (min/mean/max length: 58/98/138) INFO: Center of mass of start points: (82+/-3, 97+/-6, 41+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 79+/-7) INFO: Center of mass of end points: (68+/-8, 105+/-11, 141+/-7) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 44774 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 115 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0315989 INFO: Points where local peeks in curvature occur are 80 96 46 (curv = 0.0447592) 78 101 58 (curv = 0.0480854) 74 107 65 (curv = 0.0525972) 69 110 73 (curv = 0.0382519) 66 110 81 (curv = 0.032785) 63 110 104 (curv = 0.0677648) 67 105 119 (curv = 0.0413354) 71 104 132 (curv = 0.0831429) INFO: Intermediate dominant points are 80 95 27 80 96 46 74 107 65 63 110 104 71 104 132 71 108 145 INFO: Final dominant points are 80 95 27 80 96 46 74 107 65 63 110 104 71 104 132 71 108 145 INFO: Selected control points are 80 95 27 80 94 47 72 108 66 63 110 103 71 104 130 71 108 145 INFO: Distances between consecutive points are 20 25 38 29 16 INFO: Selected control points in test subject's space are 59 56 5 59 54 15 55 60 26 51 58 44 55 54 57 55 55 65 INFO: Distances between consecutive points in test subject's space are 10 13 19 14 8 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 56.211 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 53 streamlines for straying off mask INFO: Rejected 29 streamlines for reversing direction INFO: Rejected 22 streamlines as length outliers INFO: Have 3504 total streamlines (min/mean/max length: 53/91/135) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1421 non-truncated streamlines (min/mean/max length: 53/97/135) INFO: Center of mass of start points: (134+/-8, 137+/-5, 41+/-10) INFO: Center of mass of midpoints: (133+/-4, 103+/-3, 59+/-5) INFO: Center of mass of end points: (114+/-13, 47+/-12, 71+/-14) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 38426 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.032025 INFO: Points where local peeks in curvature occur are 132 117 53 (curv = 0.060036) 134 109 56 (curv = 0.0410491) 135 95 59 (curv = 0.0780916) 126 76 69 (curv = 0.0630608) 120 60 69 (curv = 0.0507169) INFO: Intermediate dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Final dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Selected control points are 136 136 36 132 117 54 134 95 59 127 76 68 109 48 69 INFO: Distances between consecutive points are 26 23 22 33 INFO: Selected control points in test subject's space are 87 77 12 85 66 20 87 55 20 83 44 24 75 30 22 INFO: Distances between consecutive points in test subject's space are 14 11 12 16 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 12.006 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 28 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2112 total streamlines (min/mean/max length: 52/91/129) Processing pathway 4 of 18... Matching streamline ends INFO: Have 1022 non-truncated streamlines (min/mean/max length: 57/100/126) INFO: Center of mass of start points: (46+/-8, 140+/-5, 42+/-9) INFO: Center of mass of midpoints: (47+/-4, 105+/-2, 57+/-4) INFO: Center of mass of end points: (65+/-11, 46+/-11, 73+/-12) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28244 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0317225 INFO: Points where local peeks in curvature occur are 46 118 50 (curv = 0.0388051) 48 111 56 (curv = 0.0555527) 48 104 60 (curv = 0.0505194) 47 97 60 (curv = 0.0628071) 60 66 75 (curv = 0.0333833) INFO: Intermediate dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 INFO: Final dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 137 39 48 112 56 49 87 66 61 63 75 71 41 64 INFO: Distances between consecutive points are 31 27 28 27 INFO: Selected control points in test subject's space are 39 76 15 43 63 21 44 49 24 50 36 27 56 26 20 INFO: Distances between consecutive points in test subject's space are 15 14 15 14 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0323469 INFO: Points where local peeks in curvature occur are 49 130 44 (curv = 0.0612801) 48 126 50 (curv = 0.0393571) 48 113 58 (curv = 0.0660797) 44 97 61 (curv = 0.0718496) 45 90 63 (curv = 0.0473725) 56 74 73 (curv = 0.0609765) 60 64 74 (curv = 0.0331985) INFO: Intermediate dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 INFO: Final dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 57 71 73 76 42 76 INFO: Distances between consecutive points are 25 28 31 35 INFO: Selected control points in test subject's space are 43 80 16 43 68 20 41 54 23 48 40 27 58 26 26 INFO: Distances between consecutive points in test subject's space are 13 14 16 17 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330161 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0477155) 47 123 49 (curv = 0.0487921) 45 116 52 (curv = 0.0594563) 46 109 56 (curv = 0.052095) 45 104 58 (curv = 0.0485911) 49 84 64 (curv = 0.0452784) 56 75 72 (curv = 0.0471211) INFO: Intermediate dominant points are 47 145 41 45 116 52 46 96 60 56 75 72 74 43 79 INFO: Final dominant points are 47 145 41 45 116 52 47 89 63 56 75 72 74 43 79 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 122 50 46 97 60 58 71 73 74 43 79 INFO: Distances between consecutive points are 25 27 31 33 INFO: Selected control points in test subject's space are 42 80 16 42 68 19 42 55 22 49 41 27 57 26 28 INFO: Distances between consecutive points in test subject's space are 12 13 16 17 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0297754 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0481203) 47 123 49 (curv = 0.0496145) 45 116 52 (curv = 0.0553555) 46 109 56 (curv = 0.0439455) 47 88 63 (curv = 0.0344062) 56 73 72 (curv = 0.0399798) 59 66 73 (curv = 0.0363352) INFO: Intermediate dominant points are 47 145 41 45 116 52 45 98 59 56 73 72 75 46 75 INFO: Final dominant points are 47 145 41 45 116 52 47 88 63 56 73 72 75 46 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 123 49 45 99 59 56 73 72 75 46 75 INFO: Distances between consecutive points are 23 26 31 33 INFO: Selected control points in test subject's space are 42 80 16 42 69 19 42 56 22 48 42 26 58 28 26 INFO: Distances between consecutive points in test subject's space are 11 13 16 17 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.032913 INFO: Points where local peeks in curvature occur are 49 131 44 (curv = 0.0580746) 48 114 58 (curv = 0.0639599) 44 97 61 (curv = 0.0728882) 46 88 64 (curv = 0.0464374) 56 74 73 (curv = 0.0419059) 59 67 73 (curv = 0.0474898) 66 58 74 (curv = 0.042791) INFO: Intermediate dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 INFO: Final dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 58 70 73 76 42 76 INFO: Distances between consecutive points are 25 28 33 33 INFO: Selected control points in test subject's space are 43 80 16 43 68 20 41 54 23 49 40 27 58 26 26 INFO: Distances between consecutive points in test subject's space are 13 14 17 17 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330215 INFO: Points where local peeks in curvature occur are 47 130 47 (curv = 0.0693609) 49 116 57 (curv = 0.0845046) 48 109 57 (curv = 0.040301) 47 102 59 (curv = 0.0437753) 48 88 65 (curv = 0.053778) 57 67 72 (curv = 0.0353276) INFO: Intermediate dominant points are 41 145 49 49 116 57 48 88 65 57 67 72 61 50 72 INFO: Final dominant points are 41 145 49 49 116 57 48 88 65 57 67 72 61 50 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 145 49 48 122 53 47 99 60 54 76 70 61 50 72 INFO: Distances between consecutive points are 24 24 26 27 INFO: Selected control points in test subject's space are 39 80 20 43 68 20 43 56 22 47 43 26 50 30 25 INFO: Distances between consecutive points in test subject's space are 13 12 14 13 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0267388 INFO: Points where local peeks in curvature occur are 47 129 47 (curv = 0.0624221) 49 118 56 (curv = 0.0769472) 48 106 59 (curv = 0.0335264) 48 89 65 (curv = 0.0476719) 55 73 71 (curv = 0.0312977) INFO: Intermediate dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Final dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 40 145 49 48 121 53 48 98 62 54 74 71 63 51 72 INFO: Distances between consecutive points are 26 25 26 25 INFO: Selected control points in test subject's space are 39 80 20 43 67 20 43 55 23 47 42 26 51 30 25 INFO: Distances between consecutive points in test subject's space are 14 12 14 13 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0378734 INFO: Points where local peeks in curvature occur are 45 110 56 (curv = 0.0393051) 47 86 64 (curv = 0.0499122) 55 74 72 (curv = 0.0611631) 58 65 72 (curv = 0.0564798) 66 52 74 (curv = 0.195512) INFO: Intermediate dominant points are 43 135 37 45 110 56 46 87 63 55 74 72 61 51 62 INFO: Final dominant points are 43 135 37 45 110 56 47 85 64 55 74 72 61 51 62 WARN: Defaulting to equidistant control points INFO: Selected control points are 43 135 37 45 113 55 46 90 62 57 66 72 61 51 62 INFO: Distances between consecutive points are 28 24 28 18 INFO: Selected control points in test subject's space are 40 76 13 42 63 21 42 51 23 48 38 26 50 31 20 INFO: Distances between consecutive points in test subject's space are 15 12 15 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0274305 INFO: Points where local peeks in curvature occur are 46 129 47 (curv = 0.0683541) 49 117 56 (curv = 0.0800283) 48 107 59 (curv = 0.0379104) 48 89 65 (curv = 0.0367021) 49 85 67 (curv = 0.032281) INFO: Intermediate dominant points are 40 145 49 49 117 56 48 89 65 54 74 71 61 50 72 INFO: Final dominant points are 40 145 49 49 117 56 48 89 65 58 62 73 61 50 72 INFO: Selected control points are 40 145 49 49 117 54 48 89 66 58 63 73 61 50 72 INFO: Distances between consecutive points are 30 30 29 13 INFO: Selected control points in test subject's space are 39 80 20 44 65 21 43 50 25 49 36 26 50 30 25 INFO: Distances between consecutive points in test subject's space are 16 16 15 6 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 7.92 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 111 streamlines for straying off mask INFO: Rejected 28 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5155 total streamlines (min/mean/max length: 8/57/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3626 non-truncated streamlines (min/mean/max length: 8/57/101) INFO: Center of mass of start points: (128+/-7, 144+/-4, 41+/-5) INFO: Center of mass of midpoints: (125+/-2, 126+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-16, 58+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 22818 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 68 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0689837 INFO: Points where local peeks in curvature occur are 126 124 54 (curv = 0.148395) 124 130 60 (curv = 0.100467) 109 153 61 (curv = 0.0751884) INFO: Intermediate dominant points are 125 145 40 126 124 54 123 133 61 109 153 61 107 166 56 INFO: Final dominant points are 125 145 40 126 124 54 114 144 59 109 153 61 107 166 56 INFO: Selected control points are 125 145 40 128 125 53 115 144 61 109 152 60 107 166 56 INFO: Distances between consecutive points are 24 24 10 15 INFO: Selected control points in test subject's space are 82 81 15 83 70 20 77 79 25 73 83 25 72 91 24 INFO: Distances between consecutive points in test subject's space are 12 12 6 8 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 14.862 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 333 streamlines for straying off mask INFO: Rejected 112 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6476 total streamlines (min/mean/max length: 8/61/107) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4924 non-truncated streamlines (min/mean/max length: 8/61/107) INFO: Center of mass of start points: (53+/-6, 145+/-4, 41+/-6) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 24349 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0634605 INFO: Points where local peeks in curvature occur are 52 132 46 (curv = 0.0872989) 55 129 54 (curv = 0.165012) 61 137 60 (curv = 0.0656823) 73 151 61 (curv = 0.0884418) INFO: Intermediate dominant points are 50 147 43 55 129 54 64 139 59 73 151 61 77 176 55 INFO: Final dominant points are 50 147 43 55 129 54 67 141 60 73 151 61 77 176 55 INFO: Selected control points are 50 147 43 55 128 52 66 143 61 73 151 60 77 176 55 INFO: Distances between consecutive points are 22 21 11 26 INFO: Selected control points in test subject's space are 44 81 17 46 71 20 52 78 26 55 82 26 57 96 25 INFO: Distances between consecutive points in test subject's space are 11 11 5 14 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 22.172 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 746 streamlines for straying off mask INFO: Rejected 236 streamlines for reversing direction INFO: Rejected 148 streamlines as length outliers INFO: Have 8645 total streamlines (min/mean/max length: 87/132/160) Processing pathway 7 of 18... Matching streamline ends INFO: Have 6398 non-truncated streamlines (min/mean/max length: 87/133/161) INFO: Center of mass of start points: (102+/-6, 38+/-9, 99+/-16) INFO: Center of mass of midpoints: (90+/-3, 89+/-4, 83+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-9, 99+/-17) INFO: Split streamlines into 35 segments Computing path histograms INFO: Total streamline volume is 68450 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.049112 INFO: Points where local peeks in curvature occur are 111 49 87 (curv = 0.107178) 118 64 87 (curv = 0.111705) 89 91 83 (curv = 0.0608033) 83 90 83 (curv = 0.0511514) 62 66 87 (curv = 0.112736) 68 52 86 (curv = 0.0776407) 71 47 89 (curv = 0.0644977) INFO: Intermediate dominant points are 105 42 106 118 64 87 112 77 84 89 91 83 62 66 87 71 47 89 77 39 110 INFO: Final dominant points are 105 42 106 118 64 87 101 88 83 89 91 83 62 66 87 71 47 89 77 39 110 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 42 106 113 52 87 112 76 84 90 91 83 67 76 86 68 52 86 77 39 110 INFO: Distances between consecutive points are 23 24 27 28 24 29 INFO: Selected control points in test subject's space are 73 24 41 77 30 32 76 43 32 65 50 33 53 42 33 54 30 32 59 22 43 INFO: Distances between consecutive points in test subject's space are 12 13 13 14 12 14 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0489095 INFO: Points where local peeks in curvature occur are 110 43 95 (curv = 0.0768584) 112 50 86 (curv = 0.106706) 118 64 85 (curv = 0.110581) 107 84 82 (curv = 0.0551333) 88 91 83 (curv = 0.049169) 79 89 83 (curv = 0.0694687) 63 66 87 (curv = 0.100722) 69 52 87 (curv = 0.0718068) INFO: Intermediate dominant points are 106 41 111 112 50 86 118 64 85 79 89 83 63 66 87 71 50 87 78 39 111 INFO: Final dominant points are 106 41 111 112 50 86 118 64 85 79 89 83 63 66 87 76 42 97 78 39 111 INFO: Selected control points are 106 41 111 111 48 87 119 69 85 81 91 83 63 64 86 76 42 94 78 39 111 INFO: Distances between consecutive points are 25 23 44 33 27 17 INFO: Selected control points in test subject's space are 74 23 43 76 28 31 80 39 32 60 50 33 51 36 33 58 24 35 59 22 43 INFO: Distances between consecutive points in test subject's space are 13 12 23 17 14 8 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 66.728 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 895 streamlines for straying off mask INFO: Rejected 406 streamlines for reversing direction INFO: Rejected 57 streamlines as length outliers INFO: Have 26269 total streamlines (min/mean/max length: 49/91/121) Processing pathway 8 of 18... Matching streamline ends INFO: Have 17296 non-truncated streamlines (min/mean/max length: 52/90/123) INFO: Center of mass of start points: (103+/-5, 187+/-6, 75+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 76+/-12) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 69800 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0521372 INFO: Points where local peeks in curvature occur are 108 166 74 (curv = 0.0525738) 103 155 76 (curv = 0.06521) 92 149 77 (curv = 0.0986181) 82 151 75 (curv = 0.0545684) 76 156 73 (curv = 0.0612074) 73 177 70 (curv = 0.0817821) INFO: Intermediate dominant points are 106 186 79 108 166 74 92 149 77 73 177 70 75 190 76 INFO: Final dominant points are 106 186 79 108 166 74 92 149 77 73 177 70 75 190 76 INFO: Selected control points are 106 186 79 109 167 73 89 148 77 71 175 70 75 190 76 INFO: Distances between consecutive points are 20 28 33 17 INFO: Selected control points in test subject's space are 72 99 37 73 90 33 64 80 34 54 94 32 56 101 36 INFO: Distances between consecutive points in test subject's space are 10 13 17 8 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 432.518 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.bbr.trk INFO: Rejected 136 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 52 streamlines as length outliers INFO: Have 13385 total streamlines (min/mean/max length: 30/61/94) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4823 non-truncated streamlines (min/mean/max length: 37/69/92) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-6) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 44160 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0492409 INFO: Points where local peeks in curvature occur are 110 177 72 (curv = 0.092235) 114 169 75 (curv = 0.141218) 111 159 74 (curv = 0.054827) 110 142 79 (curv = 0.0746263) INFO: Intermediate dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Final dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Selected control points are 107 186 78 113 169 73 111 152 77 109 142 78 98 116 78 INFO: Distances between consecutive points are 19 18 10 28 INFO: Selected control points in test subject's space are 72 99 37 75 91 33 75 82 34 74 77 34 68 64 32 INFO: Distances between consecutive points in test subject's space are 9 9 5 14 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 85.794 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 125 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 36 streamlines as length outliers INFO: Have 11832 total streamlines (min/mean/max length: 31/64/93) Processing pathway 10 of 18... Matching streamline ends INFO: Have 4716 non-truncated streamlines (min/mean/max length: 41/71/93) INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5) INFO: Center of mass of end points: (82+/-2, 115+/-3, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 39786 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.050808 INFO: Points where local peeks in curvature occur are 72 178 81 (curv = 0.0623071) 68 165 78 (curv = 0.120283) 70 156 77 (curv = 0.110688) 69 145 82 (curv = 0.0626308) 69 141 82 (curv = 0.0675945) 78 126 80 (curv = 0.0713342) INFO: Intermediate dominant points are 71 192 90 68 165 78 70 154 78 69 141 82 80 116 81 INFO: Final dominant points are 71 192 90 68 165 78 69 151 79 69 141 82 80 116 81 INFO: Selected control points are 71 192 90 70 165 77 69 151 80 70 141 82 80 116 81 INFO: Distances between consecutive points are 30 14 10 27 INFO: Selected control points in test subject's space are 54 101 44 54 88 35 53 81 36 54 76 36 59 63 34 INFO: Distances between consecutive points in test subject's space are 16 7 5 14 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 61.877 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.bbr.trk INFO: Rejected 11 streamlines for straying off mask INFO: Rejected 63 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4187 total streamlines (min/mean/max length: 2/45/95) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1335 non-truncated streamlines (min/mean/max length: 17/53/89) INFO: Center of mass of start points: (109+/-6, 81+/-12, 75+/-13) INFO: Center of mass of midpoints: (111+/-2, 99+/-4, 58+/-5) INFO: Center of mass of end points: (115+/-5, 122+/-13, 42+/-11) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 18137 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0311067 INFO: Points where local peeks in curvature occur are 103 83 75 (curv = 0.0437025) 110 93 60 (curv = 0.0374356) 114 113 42 (curv = 0.0822433) INFO: Intermediate dominant points are 103 75 85 103 83 75 110 93 60 114 113 42 116 127 39 INFO: Final dominant points are 103 75 85 103 83 75 110 93 60 114 113 42 116 127 39 INFO: Selected control points are 103 75 85 104 84 75 110 94 60 114 112 42 116 127 39 INFO: Distances between consecutive points are 13 19 26 15 INFO: Selected control points in test subject's space are 71 42 32 72 48 28 75 54 21 76 64 13 77 72 13 INFO: Distances between consecutive points in test subject's space are 7 10 13 8 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 8.467 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.bbr.trk INFO: Rejected 156 streamlines for straying off mask INFO: Rejected 65 streamlines for reversing direction INFO: Rejected 14 streamlines as length outliers INFO: Have 4001 total streamlines (min/mean/max length: 13/44/90) Processing pathway 12 of 18... Matching streamline ends INFO: Have 1177 non-truncated streamlines (min/mean/max length: 26/54/92) INFO: Center of mass of start points: (71+/-5, 80+/-7, 77+/-8) INFO: Center of mass of midpoints: (67+/-2, 101+/-2, 56+/-2) INFO: Center of mass of end points: (63+/-4, 127+/-7, 38+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 16752 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0256743 INFO: Points where local peeks in curvature occur are 65 108 46 (curv = 0.0700887) INFO: Intermediate dominant points are 74 76 83 70 91 68 65 108 46 66 115 41 66 131 38 INFO: Final dominant points are 74 76 83 66 102 53 65 108 46 66 122 39 66 131 38 INFO: Selected control points are 74 76 83 66 103 54 65 107 46 66 122 38 66 131 38 INFO: Distances between consecutive points are 40 9 17 9 INFO: Selected control points in test subject's space are 57 43 32 52 58 19 52 61 16 52 69 13 52 74 13 INFO: Distances between consecutive points in test subject's space are 20 4 9 5 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 7.661 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.bbr.trk INFO: Rejected 17 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 1 streamlines as length outliers INFO: Have 5260 total streamlines (min/mean/max length: 25/68/135) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1466 non-truncated streamlines (min/mean/max length: 55/86/135) INFO: Center of mass of start points: (99+/-4, 80+/-7, 103+/-7) INFO: Center of mass of midpoints: (96+/-2, 124+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 20084 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 94 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0230295 INFO: Points where local peeks in curvature occur are 96 102 105 (curv = 0.0496757) 96 110 106 (curv = 0.0255031) 97 117 107 (curv = 0.0434525) 97 129 105 (curv = 0.0359116) 97 144 99 (curv = 0.0303995) 96 150 95 (curv = 0.0341667) INFO: Intermediate dominant points are 101 74 96 96 102 105 96 150 95 97 164 78 INFO: Final dominant points are 101 74 96 96 102 105 96 150 95 97 164 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 74 96 96 107 106 97 138 101 97 164 78 INFO: Distances between consecutive points are 35 31 35 INFO: Selected control points in test subject's space are 71 41 38 68 57 45 68 73 45 67 88 35 INFO: Distances between consecutive points in test subject's space are 18 16 18 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 94 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0237162 INFO: Points where local peeks in curvature occur are 96 102 105 (curv = 0.0439941) 97 116 106 (curv = 0.0289054) 97 130 104 (curv = 0.0323982) 97 144 98 (curv = 0.0294065) 96 147 96 (curv = 0.0335752) INFO: Intermediate dominant points are 101 74 97 96 102 105 96 147 96 97 163 79 INFO: Final dominant points are 101 74 97 96 102 105 96 147 96 97 163 79 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 74 97 96 105 105 97 137 101 97 163 79 INFO: Distances between consecutive points are 32 32 34 INFO: Selected control points in test subject's space are 71 41 38 68 56 45 68 73 45 67 87 36 INFO: Distances between consecutive points in test subject's space are 17 17 17 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 94 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0265209 INFO: Points where local peeks in curvature occur are 99 94 104 (curv = 0.027054) 96 101 105 (curv = 0.0600809) 96 118 107 (curv = 0.0466514) 96 130 105 (curv = 0.0535692) 97 138 102 (curv = 0.0358565) 96 144 99 (curv = 0.0421063) INFO: Intermediate dominant points are 101 74 96 96 101 105 96 130 105 97 165 80 INFO: Final dominant points are 101 74 96 96 101 105 96 130 105 97 165 80 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 74 96 96 107 106 97 138 102 97 165 80 INFO: Distances between consecutive points are 35 31 35 INFO: Selected control points in test subject's space are 71 41 38 68 57 45 68 73 45 67 88 36 INFO: Distances between consecutive points in test subject's space are 18 16 18 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 94 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0234366 INFO: Points where local peeks in curvature occur are 99 94 103 (curv = 0.0308894) 96 102 105 (curv = 0.0516391) 97 116 106 (curv = 0.0488006) 95 129 105 (curv = 0.0462705) 96 144 99 (curv = 0.0304346) 95 149 96 (curv = 0.0274997) INFO: Intermediate dominant points are 101 74 97 96 102 105 96 144 99 97 164 81 INFO: Final dominant points are 101 74 97 96 102 105 96 144 99 97 164 81 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 74 97 96 106 105 96 137 102 97 164 81 INFO: Distances between consecutive points are 33 31 34 INFO: Selected control points in test subject's space are 71 41 38 68 57 45 67 73 45 67 88 37 INFO: Distances between consecutive points in test subject's space are 18 16 17 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 91 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0245998 INFO: Points where local peeks in curvature occur are 96 104 105 (curv = 0.0652408) 97 112 106 (curv = 0.0368267) 97 120 106 (curv = 0.0433112) 96 127 104 (curv = 0.0266549) 96 130 104 (curv = 0.0279652) INFO: Intermediate dominant points are 103 77 99 96 104 105 97 120 106 96 165 78 INFO: Final dominant points are 103 77 99 96 104 105 97 120 106 96 165 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 77 99 97 110 106 96 140 101 96 165 78 INFO: Distances between consecutive points are 34 30 34 INFO: Selected control points in test subject's space are 72 42 40 68 59 45 67 74 45 67 89 35 INFO: Distances between consecutive points in test subject's space are 18 15 18 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 91 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0212121 INFO: Points where local peeks in curvature occur are 99 94 106 (curv = 0.0604487) 97 101 106 (curv = 0.0365336) 97 123 106 (curv = 0.0378372) 97 128 105 (curv = 0.0262276) 97 131 104 (curv = 0.0258646) 97 138 100 (curv = 0.0230098) 97 151 91 (curv = 0.0246923) INFO: Intermediate dominant points are 100 75 108 99 94 106 97 123 106 95 165 79 INFO: Final dominant points are 100 75 108 99 94 106 97 123 106 95 165 79 WARN: Defaulting to equidistant control points INFO: Selected control points are 100 75 108 97 105 106 97 136 101 95 165 79 INFO: Distances between consecutive points are 30 31 36 INFO: Selected control points in test subject's space are 70 41 44 68 56 45 68 72 45 66 88 36 INFO: Distances between consecutive points in test subject's space are 15 16 18 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 92 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0256351 INFO: Points where local peeks in curvature occur are 96 103 105 (curv = 0.0433382) 96 113 106 (curv = 0.02817) 96 122 106 (curv = 0.0328888) 95 131 104 (curv = 0.039297) 96 136 102 (curv = 0.0278717) 96 143 100 (curv = 0.0323693) 95 149 96 (curv = 0.0439844) INFO: Intermediate dominant points are 101 74 97 96 103 105 95 149 96 96 164 81 INFO: Final dominant points are 101 74 97 96 103 105 95 149 96 96 164 81 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 74 97 96 105 105 96 137 102 96 164 81 INFO: Distances between consecutive points are 32 32 34 INFO: Selected control points in test subject's space are 71 41 38 68 56 45 67 73 45 67 88 37 INFO: Distances between consecutive points in test subject's space are 17 17 17 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 92 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0271474 INFO: Points where local peeks in curvature occur are 97 97 107 (curv = 0.047125) 97 124 108 (curv = 0.0422405) 97 127 107 (curv = 0.0441861) 98 134 104 (curv = 0.0399905) INFO: Intermediate dominant points are 99 73 98 97 97 107 97 127 107 94 162 78 INFO: Final dominant points are 99 73 98 97 97 107 97 127 107 94 162 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 73 98 97 104 107 98 136 102 94 162 78 INFO: Distances between consecutive points are 32 32 36 INFO: Selected control points in test subject's space are 70 40 39 68 55 46 68 72 45 66 87 35 INFO: Distances between consecutive points in test subject's space are 17 17 18 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 91 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0210468 INFO: Points where local peeks in curvature occur are 99 94 106 (curv = 0.0604487) 97 101 106 (curv = 0.0365336) 97 122 106 (curv = 0.0296669) 97 131 104 (curv = 0.031874) 97 135 102 (curv = 0.0253973) INFO: Intermediate dominant points are 102 74 108 99 94 106 97 131 104 95 164 78 INFO: Final dominant points are 102 74 108 99 94 106 97 131 104 95 164 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 102 74 108 97 105 106 97 136 101 95 164 78 INFO: Distances between consecutive points are 31 31 36 INFO: Selected control points in test subject's space are 71 40 44 68 56 45 68 72 45 66 88 35 INFO: Distances between consecutive points in test subject's space are 16 16 19 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 90 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0312446 INFO: Points where local peeks in curvature occur are 96 102 105 (curv = 0.0503923) 96 113 106 (curv = 0.0370885) 97 119 106 (curv = 0.0735999) 95 131 104 (curv = 0.0453991) 96 139 101 (curv = 0.0448165) 95 146 98 (curv = 0.0388535) INFO: Intermediate dominant points are 101 74 96 97 119 106 96 139 101 96 164 83 INFO: Final dominant points are 101 74 96 97 119 106 96 139 101 96 164 83 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 74 96 96 105 105 95 135 103 96 164 83 INFO: Distances between consecutive points are 33 30 35 INFO: Selected control points in test subject's space are 71 41 38 68 56 45 67 72 46 67 88 38 INFO: Distances between consecutive points in test subject's space are 17 16 18 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 82 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0291971 INFO: Points where local peeks in curvature occur are 100 97 105 (curv = 0.0432547) 97 104 106 (curv = 0.0510925) 96 111 106 (curv = 0.0425866) 97 119 106 (curv = 0.0387687) 96 132 103 (curv = 0.0584493) INFO: Intermediate dominant points are 101 84 104 97 104 106 96 132 103 101 165 80 INFO: Final dominant points are 101 84 104 97 104 106 96 132 103 101 165 80 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 84 104 96 111 106 97 139 99 101 165 80 INFO: Distances between consecutive points are 28 29 32 INFO: Selected control points in test subject's space are 70 45 43 68 59 46 68 74 44 69 88 36 INFO: Distances between consecutive points in test subject's space are 14 15 16 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 86 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0233378 INFO: Points where local peeks in curvature occur are 98 95 107 (curv = 0.0568288) 97 98 107 (curv = 0.056154) 96 109 107 (curv = 0.027863) 96 118 107 (curv = 0.031383) 97 123 106 (curv = 0.0277436) 97 128 105 (curv = 0.0240206) 97 136 102 (curv = 0.032032) INFO: Intermediate dominant points are 103 79 107 98 95 107 97 136 102 95 165 80 INFO: Final dominant points are 103 79 107 98 95 107 97 136 102 95 165 80 WARN: Defaulting to equidistant control points INFO: Selected control points are 103 79 107 96 107 107 97 136 102 95 165 80 INFO: Distances between consecutive points are 29 29 36 INFO: Selected control points in test subject's space are 72 43 44 68 57 46 68 72 45 66 88 36 INFO: Distances between consecutive points in test subject's space are 15 15 18 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 86 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0238452 INFO: Points where local peeks in curvature occur are 97 98 107 (curv = 0.0657536) 96 108 107 (curv = 0.02817) 97 121 107 (curv = 0.0460315) 97 133 104 (curv = 0.039472) 97 141 99 (curv = 0.0264866) INFO: Intermediate dominant points are 103 78 108 97 98 107 97 121 107 95 165 81 INFO: Final dominant points are 103 78 108 97 98 107 97 121 107 95 165 81 INFO: Selected control points are 103 78 108 96 96 104 95 117 107 95 165 81 INFO: Distances between consecutive points are 20 21 55 INFO: Selected control points in test subject's space are 72 42 44 68 52 43 67 62 46 66 88 37 INFO: Distances between consecutive points in test subject's space are 11 10 28 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 17.019 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.bbr.trk INFO: Rejected 40 streamlines for straying off mask INFO: Rejected 8 streamlines for reversing direction INFO: Rejected 44 streamlines as length outliers INFO: Have 4330 total streamlines (min/mean/max length: 30/66/116) Processing pathway 14 of 18... Matching streamline ends INFO: Have 928 non-truncated streamlines (min/mean/max length: 56/83/119) INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 125+/-2, 106+/-2) INFO: Center of mass of end points: (83+/-4, 160+/-6, 89+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18942 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0236714 INFO: Points where local peeks in curvature occur are 80 91 104 (curv = 0.0447291) 81 106 107 (curv = 0.0271521) 82 117 107 (curv = 0.0414315) 82 132 103 (curv = 0.0282386) 83 139 99 (curv = 0.0296175) INFO: Intermediate dominant points are 81 77 93 80 91 104 82 117 107 87 156 90 INFO: Final dominant points are 81 77 93 80 91 104 82 117 107 87 156 90 WARN: Defaulting to equidistant control points INFO: Selected control points are 81 77 93 81 102 106 82 129 104 87 156 90 INFO: Distances between consecutive points are 28 27 31 INFO: Selected control points in test subject's space are 60 42 37 60 54 45 60 68 46 62 83 41 INFO: Distances between consecutive points in test subject's space are 14 14 16 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 78 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0227163 INFO: Points where local peeks in curvature occur are 80 95 105 (curv = 0.0477871) 82 113 107 (curv = 0.0509931) 82 130 103 (curv = 0.0384477) INFO: Intermediate dominant points are 81 78 94 82 113 107 82 132 102 82 155 84 INFO: Final dominant points are 81 78 94 82 113 107 83 144 95 82 155 84 WARN: Defaulting to equidistant control points INFO: Selected control points are 81 78 94 81 104 106 82 130 103 82 155 84 INFO: Distances between consecutive points are 29 26 31 INFO: Selected control points in test subject's space are 60 43 37 60 55 45 60 69 46 60 83 38 INFO: Distances between consecutive points in test subject's space are 14 14 16 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 78 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0270174 INFO: Points where local peeks in curvature occur are 83 110 107 (curv = 0.0522601) 83 126 104 (curv = 0.0415067) 84 134 99 (curv = 0.0359319) 84 141 96 (curv = 0.0418542) INFO: Intermediate dominant points are 81 80 95 83 110 107 84 141 96 80 159 83 INFO: Final dominant points are 81 80 95 83 110 107 84 141 96 80 159 83 WARN: Defaulting to equidistant control points INFO: Selected control points are 81 80 95 82 106 106 84 132 100 80 159 83 INFO: Distances between consecutive points are 28 27 32 INFO: Selected control points in test subject's space are 60 44 38 61 56 45 61 70 44 59 85 38 INFO: Distances between consecutive points in test subject's space are 14 14 16 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 69 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0321881 INFO: Points where local peeks in curvature occur are 81 97 105 (curv = 0.0509592) 82 103 104 (curv = 0.0386595) 83 111 106 (curv = 0.0451698) 82 115 107 (curv = 0.0432022) 83 130 105 (curv = 0.0626619) INFO: Intermediate dominant points are 82 84 100 83 109 106 83 130 105 82 154 89 INFO: Final dominant points are 82 84 100 82 117 107 83 130 105 82 154 89 INFO: Selected control points are 82 84 100 81 115 106 80 127 104 82 154 89 INFO: Distances between consecutive points are 32 12 31 INFO: Selected control points in test subject's space are 61 46 41 60 61 46 59 67 46 60 82 40 INFO: Distances between consecutive points in test subject's space are 16 6 16 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 10.83 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.bbr.trk INFO: Rejected 235 streamlines for straying off mask INFO: Rejected 695 streamlines for reversing direction INFO: Rejected 24 streamlines as length outliers INFO: Have 9313 total streamlines (min/mean/max length: 20/59/106) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3894 non-truncated streamlines (min/mean/max length: 26/65/106) INFO: Center of mass of start points: (145+/-6, 127+/-5, 98+/-12) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-4) INFO: Center of mass of end points: (141+/-10, 84+/-10, 111+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 50739 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.05886 INFO: Points where local peeks in curvature occur are 129 115 99 (curv = 0.0903529) 130 86 103 (curv = 0.141374) INFO: Intermediate dominant points are 150 131 97 129 115 99 129 102 102 130 86 103 150 86 113 INFO: Final dominant points are 150 131 97 129 115 99 128 95 103 130 86 103 150 86 113 INFO: Selected control points are 150 131 97 129 115 98 129 96 103 130 86 104 150 86 113 INFO: Distances between consecutive points are 26 20 10 22 INFO: Selected control points in test subject's space are 95 70 42 84 62 41 84 52 43 85 47 42 95 46 47 INFO: Distances between consecutive points in test subject's space are 14 10 5 11 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 42.607 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.bbr.trk INFO: Rejected 786 streamlines for straying off mask INFO: Rejected 413 streamlines for reversing direction INFO: Rejected 69 streamlines as length outliers INFO: Have 14354 total streamlines (min/mean/max length: 18/63/98) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6759 non-truncated streamlines (min/mean/max length: 27/69/101) INFO: Center of mass of start points: (34+/-8, 130+/-6, 97+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 103+/-3) INFO: Center of mass of end points: (40+/-9, 81+/-10, 113+/-11) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 64731 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0597307 INFO: Points where local peeks in curvature occur are 50 119 100 (curv = 0.116181) 51 90 103 (curv = 0.0712553) 53 81 102 (curv = 0.194926) INFO: Intermediate dominant points are 33 127 97 50 119 100 52 99 105 53 81 102 39 73 122 INFO: Final dominant points are 33 127 97 50 119 100 51 90 103 53 81 102 39 73 122 INFO: Selected control points are 33 127 97 50 118 101 51 91 105 53 80 102 39 73 122 INFO: Distances between consecutive points are 20 27 12 25 INFO: Selected control points in test subject's space are 36 67 43 44 62 44 45 48 44 46 43 42 39 38 51 INFO: Distances between consecutive points in test subject's space are 9 14 5 12 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 111.028 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.bbr.trk INFO: Rejected 401 streamlines for straying off mask INFO: Rejected 69 streamlines for reversing direction INFO: Rejected 42 streamlines as length outliers INFO: Have 7382 total streamlines (min/mean/max length: 34/90/136) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4535 non-truncated streamlines (min/mean/max length: 34/92/139) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (126+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-7, 84+/-13, 65+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 46196 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0494031 INFO: Points where local peeks in curvature occur are 130 118 98 (curv = 0.112622) 125 87 100 (curv = 0.0939046) 128 81 94 (curv = 0.0846298) 135 81 74 (curv = 0.072545) INFO: Intermediate dominant points are 148 133 85 130 118 98 125 87 100 135 81 74 150 93 57 INFO: Final dominant points are 148 133 85 130 118 98 125 87 100 135 81 74 150 93 57 INFO: Selected control points are 148 133 85 131 117 99 127 87 100 133 82 74 150 93 57 INFO: Distances between consecutive points are 27 30 27 26 INFO: Selected control points in test subject's space are 94 72 36 85 63 42 84 48 40 86 47 27 95 54 19 INFO: Distances between consecutive points in test subject's space are 14 15 13 14 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 41.267 sec. Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.bbr.trk INFO: Rejected 64 streamlines for straying off mask INFO: Rejected 16 streamlines for reversing direction INFO: Rejected 19 streamlines as length outliers INFO: Have 3041 total streamlines (min/mean/max length: 31/90/141) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1645 non-truncated streamlines (min/mean/max length: 55/92/143) INFO: Center of mass of start points: (40+/-9, 135+/-8, 96+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-9, 71+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 32030 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0544081 INFO: Points where local peeks in curvature occur are 56 126 95 (curv = 0.115336) 58 99 102 (curv = 0.108833) 52 87 98 (curv = 0.0917009) 51 82 87 (curv = 0.0588861) INFO: Intermediate dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 INFO: Final dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 42 138 83 54 121 98 57 97 102 50 81 86 29 83 70 INFO: Distances between consecutive points are 26 25 24 26 INFO: Selected control points in test subject's space are 40 74 37 46 64 43 48 52 43 45 45 34 34 47 26 INFO: Distances between consecutive points in test subject's space are 13 12 12 14 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 110 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.045208 INFO: Points where local peeks in curvature occur are 53 130 92 (curv = 0.0955001) 52 119 97 (curv = 0.0509654) 54 105 102 (curv = 0.0588573) 52 79 91 (curv = 0.099188) 48 78 80 (curv = 0.0708915) INFO: Intermediate dominant points are 31 142 82 53 130 92 54 105 102 52 79 91 26 77 70 INFO: Final dominant points are 31 142 82 53 130 92 54 105 102 52 79 91 26 77 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 142 82 53 126 93 54 98 101 50 78 83 26 77 70 INFO: Distances between consecutive points are 29 29 27 27 INFO: Selected control points in test subject's space are 34 76 37 46 67 41 47 52 43 45 43 32 32 43 26 INFO: Distances between consecutive points in test subject's space are 16 15 14 14 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0541027 INFO: Points where local peeks in curvature occur are 54 114 102 (curv = 0.111201) 57 97 104 (curv = 0.0718246) 55 86 101 (curv = 0.0879416) 54 82 96 (curv = 0.0682463) 51 82 83 (curv = 0.0671557) INFO: Intermediate dominant points are 31 131 99 54 114 102 55 86 101 51 82 83 34 79 75 INFO: Final dominant points are 31 131 99 54 114 102 55 86 101 51 82 83 34 79 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 101 57 93 103 51 81 86 34 79 75 INFO: Distances between consecutive points are 27 23 22 20 INFO: Selected control points in test subject's space are 35 69 44 46 61 44 48 50 43 45 45 34 36 44 29 INFO: Distances between consecutive points in test subject's space are 14 11 11 10 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0543583 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0612415) 56 96 104 (curv = 0.0706371) 56 91 103 (curv = 0.060168) 54 85 101 (curv = 0.0837136) 53 80 91 (curv = 0.0613242) INFO: Intermediate dominant points are 33 129 101 53 115 102 54 85 101 52 80 83 33 75 75 INFO: Final dominant points are 33 129 101 53 115 102 54 85 101 44 82 73 33 75 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 114 102 56 92 103 52 80 84 33 75 75 INFO: Distances between consecutive points are 25 22 23 22 INFO: Selected control points in test subject's space are 36 68 45 46 60 44 48 49 43 46 44 33 36 42 28 INFO: Distances between consecutive points in test subject's space are 13 11 11 11 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0528474 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.104998) 57 93 103 (curv = 0.0841141) 53 82 95 (curv = 0.0849468) 47 82 76 (curv = 0.0588867) INFO: Intermediate dominant points are 31 128 99 52 117 101 57 93 103 53 82 95 34 79 74 INFO: Final dominant points are 31 128 99 52 117 101 57 93 103 53 82 95 34 79 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 53 116 101 57 93 103 51 81 86 34 79 74 INFO: Distances between consecutive points are 25 23 22 21 INFO: Selected control points in test subject's space are 35 68 44 46 61 44 48 50 43 45 45 34 36 44 28 INFO: Distances between consecutive points in test subject's space are 13 11 11 11 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0509719 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.106241) 56 90 103 (curv = 0.0762605) 53 80 91 (curv = 0.051943) 53 80 85 (curv = 0.0567582) 49 80 78 (curv = 0.0531748) INFO: Intermediate dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 INFO: Final dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 54 114 102 57 91 103 52 80 84 33 76 75 INFO: Distances between consecutive points are 26 23 23 21 INFO: Selected control points in test subject's space are 36 68 45 46 60 44 48 49 43 46 44 33 36 43 28 INFO: Distances between consecutive points in test subject's space are 13 11 11 11 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0523631 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.112716) 57 95 104 (curv = 0.0676929) 55 87 102 (curv = 0.0762004) 53 81 94 (curv = 0.0786657) 52 80 85 (curv = 0.0559462) INFO: Intermediate dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 INFO: Final dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 102 57 92 103 52 80 85 34 78 74 INFO: Distances between consecutive points are 27 24 22 21 INFO: Selected control points in test subject's space are 35 69 44 46 61 44 48 49 43 46 44 33 36 44 28 INFO: Distances between consecutive points in test subject's space are 14 12 11 11 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0508087 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.0873428) 57 95 104 (curv = 0.0760012) 55 85 101 (curv = 0.103893) 53 80 91 (curv = 0.0543973) 52 80 85 (curv = 0.0536442) INFO: Intermediate dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 INFO: Final dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 52 116 101 57 94 104 53 80 87 34 78 74 INFO: Distances between consecutive points are 24 23 22 23 INFO: Selected control points in test subject's space are 35 68 44 45 61 44 48 50 44 46 44 34 36 44 28 INFO: Distances between consecutive points in test subject's space are 12 11 12 12 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0511504 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.0883091) 57 95 104 (curv = 0.0762743) 55 85 101 (curv = 0.077328) 52 80 83 (curv = 0.0726445) INFO: Intermediate dominant points are 31 128 99 53 115 102 55 85 101 52 80 83 34 78 74 INFO: Final dominant points are 31 128 99 53 115 102 55 85 101 52 80 83 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 52 116 101 57 94 104 52 80 86 34 78 74 INFO: Distances between consecutive points are 24 23 23 22 INFO: Selected control points in test subject's space are 35 68 44 45 61 44 48 50 44 46 44 34 36 44 28 INFO: Distances between consecutive points in test subject's space are 12 11 12 12 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0545286 INFO: Points where local peeks in curvature occur are 54 114 102 (curv = 0.0996838) 56 97 104 (curv = 0.0731049) 54 84 98 (curv = 0.0976728) INFO: Intermediate dominant points are 31 128 99 54 114 102 54 84 98 51 82 86 34 79 74 INFO: Final dominant points are 31 128 99 54 114 102 54 84 98 46 83 75 34 79 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 53 116 101 57 94 103 51 82 86 34 79 74 INFO: Distances between consecutive points are 25 22 22 21 INFO: Selected control points in test subject's space are 35 68 44 46 61 44 48 50 43 45 45 34 36 44 28 INFO: Distances between consecutive points in test subject's space are 13 11 11 11 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0522221 INFO: Points where local peeks in curvature occur are 51 118 101 (curv = 0.08957) 53 106 104 (curv = 0.0533716) 56 95 104 (curv = 0.0627361) 56 91 103 (curv = 0.0658541) 54 82 96 (curv = 0.0734739) 49 81 79 (curv = 0.054201) INFO: Intermediate dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 INFO: Final dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 115 102 56 93 103 52 80 87 34 78 74 INFO: Distances between consecutive points are 24 22 21 22 INFO: Selected control points in test subject's space are 36 68 45 46 61 44 48 50 43 46 44 34 36 44 28 INFO: Distances between consecutive points in test subject's space are 12 11 11 12 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0539997 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0632939) 56 94 104 (curv = 0.0741206) 55 87 102 (curv = 0.0816165) 54 81 93 (curv = 0.0717009) 51 80 82 (curv = 0.0637529) INFO: Intermediate dominant points are 33 129 101 53 115 102 55 87 102 51 80 82 35 78 74 INFO: Final dominant points are 33 129 101 53 115 102 55 87 102 51 80 82 35 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 115 102 56 94 104 53 80 90 35 78 74 INFO: Distances between consecutive points are 24 21 20 24 INFO: Selected control points in test subject's space are 36 68 45 46 61 44 48 50 44 46 44 36 37 44 28 INFO: Distances between consecutive points in test subject's space are 12 11 10 12 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0545474 INFO: Points where local peeks in curvature occur are 53 114 102 (curv = 0.109509) 56 97 104 (curv = 0.0692407) 54 85 100 (curv = 0.0735222) 53 80 87 (curv = 0.0587835) 52 80 84 (curv = 0.0581913) INFO: Intermediate dominant points are 31 131 99 53 114 102 54 85 100 52 80 84 34 78 74 INFO: Final dominant points are 31 131 99 53 114 102 54 85 100 52 80 84 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 52 116 101 56 95 104 53 80 88 34 78 74 INFO: Distances between consecutive points are 26 22 22 24 INFO: Selected control points in test subject's space are 35 69 44 45 61 44 48 51 44 46 44 35 36 44 28 INFO: Distances between consecutive points in test subject's space are 13 10 12 12 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0544688 INFO: Points where local peeks in curvature occur are 52 115 101 (curv = 0.106907) 52 106 103 (curv = 0.0588014) 55 95 104 (curv = 0.0687607) 54 87 102 (curv = 0.0658239) 53 81 95 (curv = 0.0721727) INFO: Intermediate dominant points are 31 130 99 52 115 101 55 93 104 53 81 95 35 77 76 INFO: Final dominant points are 31 130 99 52 115 101 55 92 103 53 81 95 35 77 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 130 99 52 115 101 55 93 104 52 80 85 35 77 76 INFO: Distances between consecutive points are 26 22 23 19 INFO: Selected control points in test subject's space are 35 69 44 45 61 44 47 50 44 46 44 33 37 43 29 INFO: Distances between consecutive points in test subject's space are 13 11 13 10 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 80 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0429231 INFO: Points where local peeks in curvature occur are 54 117 105 (curv = 0.0760724) 57 101 104 (curv = 0.0470509) 56 94 102 (curv = 0.0574063) 53 84 90 (curv = 0.0717983) INFO: Intermediate dominant points are 41 129 102 54 117 105 53 84 90 43 82 80 25 78 73 INFO: Final dominant points are 41 129 102 54 117 105 53 84 90 36 82 73 25 78 73 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 129 102 55 112 105 56 92 101 46 82 82 25 78 73 INFO: Distances between consecutive points are 22 20 24 23 INFO: Selected control points in test subject's space are 40 68 45 47 59 46 48 49 42 43 45 32 32 44 28 INFO: Distances between consecutive points in test subject's space are 11 11 12 12 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0514306 INFO: Points where local peeks in curvature occur are 53 116 102 (curv = 0.110716) 54 107 103 (curv = 0.0531532) 57 97 105 (curv = 0.0733923) 57 91 104 (curv = 0.056127) 55 84 101 (curv = 0.0748225) 55 79 92 (curv = 0.0769231) INFO: Intermediate dominant points are 31 128 99 53 116 102 57 93 104 55 79 92 34 77 72 INFO: Final dominant points are 31 128 99 53 116 102 56 87 102 55 79 92 34 77 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 53 116 102 57 93 104 54 79 87 34 77 72 INFO: Distances between consecutive points are 25 23 22 25 INFO: Selected control points in test subject's space are 35 68 44 46 61 44 48 50 44 47 44 34 36 43 27 INFO: Distances between consecutive points in test subject's space are 13 11 12 13 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0510216 INFO: Points where local peeks in curvature occur are 51 120 104 (curv = 0.116041) 54 100 106 (curv = 0.0767535) 53 83 98 (curv = 0.0769925) 50 78 82 (curv = 0.0621276) 48 79 77 (curv = 0.0667317) INFO: Intermediate dominant points are 33 130 109 51 120 104 53 83 98 48 79 77 36 80 67 INFO: Final dominant points are 33 130 109 51 120 104 53 83 98 48 79 77 36 80 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 130 109 52 119 104 54 97 106 52 80 89 36 80 67 INFO: Distances between consecutive points are 23 22 24 27 INFO: Selected control points in test subject's space are 36 68 49 45 63 46 47 51 45 46 44 35 37 45 25 INFO: Distances between consecutive points in test subject's space are 11 12 12 13 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0477251 INFO: Points where local peeks in curvature occur are 52 118 106 (curv = 0.0961347) 53 87 100 (curv = 0.130721) 52 84 87 (curv = 0.0525987) 44 81 75 (curv = 0.080997) INFO: Intermediate dominant points are 32 128 111 52 118 106 53 87 100 44 81 75 28 84 68 INFO: Final dominant points are 32 128 111 52 118 106 53 87 100 44 81 75 28 84 68 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 128 111 53 115 105 54 91 102 49 83 81 28 84 68 INFO: Distances between consecutive points are 25 24 23 25 INFO: Selected control points in test subject's space are 35 67 50 46 61 46 47 49 43 44 46 32 33 47 25 INFO: Distances between consecutive points in test subject's space are 13 12 12 13 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0473018 INFO: Points where local peeks in curvature occur are 52 117 105 (curv = 0.109912) 55 97 104 (curv = 0.0497872) 54 88 100 (curv = 0.119239) 45 81 75 (curv = 0.075494) INFO: Intermediate dominant points are 32 128 111 52 117 105 54 88 100 45 81 75 28 85 67 INFO: Final dominant points are 32 128 111 52 117 105 54 88 100 45 81 75 28 85 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 128 111 53 116 105 54 93 102 50 83 83 28 85 67 INFO: Distances between consecutive points are 25 23 22 27 INFO: Selected control points in test subject's space are 35 67 50 46 61 46 47 50 43 45 46 33 33 48 25 INFO: Distances between consecutive points in test subject's space are 13 11 11 15 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0484529 INFO: Points where local peeks in curvature occur are 53 117 104 (curv = 0.0991243) 54 100 106 (curv = 0.0644789) 53 82 95 (curv = 0.0600171) 50 78 81 (curv = 0.0701388) INFO: Intermediate dominant points are 33 128 108 53 117 104 54 100 106 50 78 81 36 80 67 INFO: Final dominant points are 33 128 108 53 117 104 54 100 106 50 78 81 36 80 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 128 108 53 117 104 54 96 105 52 80 89 36 80 67 INFO: Distances between consecutive points are 23 21 23 27 INFO: Selected control points in test subject's space are 36 67 48 46 62 45 47 51 44 46 44 35 37 45 25 INFO: Distances between consecutive points in test subject's space are 12 11 11 13 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0476213 INFO: Points where local peeks in curvature occur are 51 120 104 (curv = 0.0894124) 54 97 106 (curv = 0.0847248) 53 82 95 (curv = 0.0577837) 50 78 82 (curv = 0.0487929) 47 79 76 (curv = 0.0505488) INFO: Intermediate dominant points are 31 127 109 51 120 104 54 97 106 53 82 95 36 80 67 INFO: Final dominant points are 31 127 109 51 120 104 54 97 106 53 82 95 36 80 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 127 109 52 118 104 54 96 106 52 79 89 36 80 67 INFO: Distances between consecutive points are 23 22 24 27 INFO: Selected control points in test subject's space are 35 66 49 45 62 46 47 51 45 46 43 35 37 45 25 INFO: Distances between consecutive points in test subject's space are 11 11 13 14 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0482718 INFO: Points where local peeks in curvature occur are 53 119 105 (curv = 0.135971) 54 98 106 (curv = 0.0531644) 53 82 96 (curv = 0.0561673) 50 78 82 (curv = 0.0613239) INFO: Intermediate dominant points are 33 129 108 53 119 105 53 82 96 50 78 82 36 80 67 INFO: Final dominant points are 33 129 108 53 119 105 53 82 96 50 78 82 36 80 67 INFO: Selected control points are 33 129 108 52 118 106 53 84 100 50 78 81 36 80 67 INFO: Distances between consecutive points are 22 35 20 20 INFO: Selected control points in test subject's space are 36 67 49 45 62 47 46 45 41 45 43 31 37 45 25 INFO: Distances between consecutive points in test subject's space are 10 18 10 10 Writing output files to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_* Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/biba1/testing_tracula/diffusion/elmo.2008/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 12.507 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Fri Mar 4 18:23:44 MST 2016 New invocation of trac-all Sat Mar 5 18:27:49 MST 2016 /home/biba1/testing_tracula/diffusion /apps/freesurfer/bin/trac-all -bedp -c dmrirc.tutorial Subject elmo.2008 SUBJECTS_DIR /home/biba1/testing_tracula/recons FREESURFER_HOME /apps/freesurfer Actual FREESURFER_HOME /apps/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 biba1 BIBAStation1 Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127629 maxlocks unlimited maxsignal 127629 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16355668 11650160 4705508 0 156632 10051656 -/+ buffers/cache: 1441872 14913796 Swap: 16698364 616 16697748 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:27:49-GMT BuildTimeStamp: Aug 22 2014 21:04:47 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:27:49-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:27:49-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:27:49-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:27:49-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:27:49-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:27:49-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /apps/freesurfer Previous: /usr/local/freesurfer/dev WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri /apps/freesurfer/bin/bedpostx_mgh: 131: /apps/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected New invocation of trac-all Sat Mar 5 18:30:53 MST 2016 /home/biba1/testing_tracula/diffusion /apps/freesurfer/bin/trac-all -bedp -c dmrirc.tutorial Subject elmo.2008 SUBJECTS_DIR /home/biba1/testing_tracula/recons FREESURFER_HOME /apps/freesurfer Actual FREESURFER_HOME /apps/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 biba1 BIBAStation1 Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127629 maxlocks unlimited maxsignal 127629 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16355668 11651232 4704436 0 156788 10052584 -/+ buffers/cache: 1441860 14913808 Swap: 16698364 616 16697748 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:30:53-GMT BuildTimeStamp: Aug 22 2014 21:04:47 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:30:53-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:30:53-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:30:53-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:30:53-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:30:53-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-01:30:53-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /apps/freesurfer Previous: /usr/local/freesurfer/dev WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri /apps/freesurfer/bin/bedpostx_mgh: 131: /apps/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected New invocation of trac-all Sat Mar 5 19:00:57 MST 2016 /home/biba1/testing_tracula/diffusion /apps/freesurfer/bin/trac-all -bedp -c dmrirc.tutorial Subject elmo.2008 SUBJECTS_DIR /home/biba1/testing_tracula/recons FREESURFER_HOME /apps/freesurfer Actual FREESURFER_HOME /apps/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 biba1 BIBAStation1 Linux BIBAStation1 3.11.0-26-generic #45~precise1-Ubuntu SMP Tue Jul 15 04:02:35 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 127629 maxlocks unlimited maxsignal 127629 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16355668 11654320 4701348 0 160152 10058828 -/+ buffers/cache: 1435340 14920328 Swap: 16698364 616 16697748 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-02:00:57-GMT BuildTimeStamp: Aug 22 2014 21:04:47 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-02:00:57-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-02:00:57-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-02:00:57-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-02:00:57-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-02:00:57-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2016/03/06-02:00:57-GMT BuildTimeStamp: May 22 2014 21:05:21 CVS: User: biba1 Machine: BIBAStation1 Platform: Linux PlatformVersion: 3.11.0-26-generic CompilerName: GCC CompilerVersion: 40400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /apps/freesurfer Previous: /usr/local/freesurfer/dev WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/biba1/testing_tracula/diffusion/elmo.2008/dmri /apps/freesurfer/bin/bedpostx_mgh: 131: /apps/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected