not sure, maybe one of the HCP folks could weigh in. You might try converting the lh.nii.gz to mgh file first. Should not make a difference, but it might


On 9/14/16 10:24 AM, Sabin Khadka wrote:
Doug- I did try
mris_convert -o $SUBJECTS_DIR/FSsub/surf/lh.white $SUBJECTS_DIR/sub/REST/bold/001/fmcpr.odd.sm5.fsaverage.lh.nii.gz fmcpr.lh.gifit-file.gii

I still get freadFloat: frear failed error.

On separate note: Is is possible to convert these FSFAST generated files (fmcpr.odd.sm5.fsaverage.?h.nii.gz and  fmcpr.odd.sm5.mni305.2mm.nii.gz) into CIFTI format?

-Sabin  

On Tue, Sep 13, 2016 at 3:09 PM Sabin Khadka <mr.sabinkhadka@gmail.com> wrote:
Hi Doug- I did try
mris_convert -o $SUBJECTS_DIR/FSsub/surf/lh.white $SUBJECTS_DIR/sub/REST/bold/001/fmcpr.odd.sm5.fsaverage.lh.nii.gz fmcpr.lh.gifit-file.gii

I still get freadFloat: frear failed error.

Cheers,
Sabin Khadka

On Tue, Sep 13, 2016 at 2:53 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
what is your mris_convert command line? You need to include vertex
position information (eg, -o lh.white)


On 09/12/2016 03:32 PM, Sabin Khadka wrote:
> Hi all,
>
> Is there a way to convert FSFAST files
> (fmcpr.odd.sm5.fsaverage.?h.nii.gz) files to convert into gifti
> format? I've tried mris_convert but it does not work.
>
> Thanks for help.
>
> Cheers,
> Sabin Khadka
>
>
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