Dear Shizuka,
You can run the script “run segmentHA_T1_long.sh” with what you already have ;-)
Cheers,
/Eugenio
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Shizuka Hayashi <s.hayashi@student.unsw.edu.au>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, March 23, 2021 at 07:31
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] longitudinal hippocampal subfield
External Email - Use Caution
Dear Freesurfer team,
I'm studying in longitudinal hippocampal changes. Currently I have output from recon-all with T1 and T2-FLAIR across each subject for each time point and output from the longitudinal pipeline
for each subject.
Now, I want to run the longitudinal hippocampal subfield but the documentation states that it is for T1 scans only.
Can I run segmentHA_T1_long.sh with above output or do I need to rerun all above process with only T1 scans.
Thank you.
Best regards,
Shizuka