Hi Pedro,

about your first question:
call the recon-all -long command exactly as you would do the processing, but instead of -all pass -localGI

No idea about 2).

Best, Martin

On Jun 13, 2013, at 12:02 PM, Pedro Rosa <pedrogomesrosa@gmail.com> wrote:

Dear all,
I have two issues:
1) I would like to run localGI in a longitudinal analysis. I runned the recon-all, the -base and the -long in all subjects. Then, I tried to run the -localGI command on .long. directories (I believe this it the directory I should run the command),  the error below returned. How can I solve this issue?
2) I tried to download the 5.2 version, but the link does not seem to be working (ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/).
I tried both Chrome and Firefox.
Regards,
Pedro Rosa.

ERROR: Are you trying to run or re-run a longitudinal time point?

       If so, please specify the following parameters:


       \' -long <tpNid> <templateid> \'


       where <tpNid> is the time point id (SAME as cross sectional

       ID) and <templateid> is the ID created in the -base run.

       The directory <tpNid>.long.<templateid> will be created

       automatically or used for output, if it already exists.

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---------------------------------
Dr. Martin Reuter
Assistant in Neuroscience - Massachusetts General Hospital
Instructor in Neurology   - Harvard Medical School
MGH / HMS / MIT

A.A.Martinos Center for Biomedical Imaging
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Charlestown, MA 02129

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