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Hi Bruce,

I am coming back to this request as I was wondering:
would it be possible to load freesurfer surface atlases in surfstat in order to label my surfaces?
Is their format compatible? I saw surfstat only accepts a limited array of formats...

Thanks,
Best,

Loïc

Le lun. 20 mai 2019 à 16:15, Bruce Fischl <fischl@nmr.mgh.harvard.edu> a écrit :
sure. All the fsaverages are in the same space (they are subsets of
fsaverage)
On Mon, 20 May 2019, Loïc Daumail wrote:

>
>         External Email - Use Caution        
>
> Hi Bruce,
>
> Thanks for your response. Is it also fine for fsaverage5 surface or I need to switch my data to
> fsaverage?
>
> Thanks,
>
> Sincerely,
>
> Loïc
>
> Le lun. 20 mai 2019 à 15:52, Bruce Fischl <fischl@nmr.mgh.harvard.edu> a écrit :
>       Hi Loic
>
>       if you are on the fsaverage surface you can save the -log10(p) values
>       using save_mgh.m, then load them in freeview and threshold them or
>       whatever
>
>       cheers
>       Bruce
>       On Mon, 20 May 2019, Loïc Daumail wrote:
>
>       >
>       >         External Email - Use Caution        
>       >
>       > Also, one more thing:
>       >
>       > My data is on fsaverage5 resolution.
>       >
>       > Thanks in advance,
>       >
>       > Sincerely,
>       >
>       > Loïc
>       >
>       > Le lun. 20 mai 2019 à 09:49, Loïc Daumail <loic.daumail@gmail.com> a écrit :
>       >       Dear Freesurfer community,
>       >
>       > I obtained score matrices of surfaces after performing diffusion embedding map on fMRI
>       data.
>       >
>       > I am now using the SurfStat toolbox(Matlab) in order to obtain p-value maps to compare
>       between
>       > two groups.
>       >
>       > After obtaining the p-value map, I would like to label the surface in order to
>       identify the
>       > regions of significant difference between both groups.
>       >
>       > Would it be possible to use Freview in order to do it?
>       > If so, which format should I use for my SurfStatP output p-value map?
>       > How would you do it, (tools to convert into a specific format, surfaces and atlas to
>       load on
>       > Freeview, which format for those ones)?
>       > I would be very grateful if you could detail a bit, as I am new to these tools!
>       >
>       > Thanks in advance,
>       >
>       > Loïc Daumail
>       >
>       >
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