External Email - Use Caution        

Oh, yep, sorry about that. I copy the list on this e-mail, and attach the log. I think the list blocks attachments, but if anyone wants to see full log I can send it.


Thanks to all,

-Eli

From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
Sent: Tuesday, July 31, 2018 2:03:05 PM
To: Rockers, Elijah D.
Subject: Re: Surface editing: recon-all exited with errors
 
can you cc the list on these emails so others can help?
On Tue, 31 Jul 2018,
Rockers, Elijah D. wrote:

>
>         External Email - Use Caution        
>
> The recon-all -make all command finished relatively quickly, still with errors. It's still showing
> the same errors, and I have attached the new recon-all.log.
>
> ____________________________________________________________________________________________________
> From: Rockers, Elijah D.
> Sent: Tuesday, July 31, 2018 12:32:11 PM
> To: Bruce Fischl
> Subject: Re: Surface editing: recon-all exited with errors  
>
> Odd. I assumed the individual recon-all commands in the log are just what is reported by the general
> pipeline, since I definitely did not issue all those commands separately. I just used the recon-all
> -make all command after editing. In anycase, I will run it again to see if anything changes, but I
> think that would be surprising.
>
>
> Thanks again
>
> - Eli
>
> ____________________________________________________________________________________________________
> From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> Sent: Tuesday, July 31, 2018 11:52:59 AM
> To: Rockers, Elijah D.
> Subject: Re: Surface editing: recon-all exited with errors  
> Hi Eli
>
> it's hard for me to tell since you have so many individual recon-all
> commands, but it looks like you didn't recreate all the surfaces after
> editing. Errors like thiss one:
>
> mrisReadTriangleFile(../surf/lh.sphere.reg): surface doesn't match
> ../surf/lh.white.preaparc
>
> typically mean something hasn't been recreated properly. Try running
> recon-all -make all
>
> cheers
> Bruce
>
>
> On Tue,
> 31 Jul 2018, Rockers, Elijah D. wrote:
>
> >
> >         External Email - Use Caution        
> >
> > Hi Bruce,
> >
> >
> > I have attached the recon-all.log, regarding an exit with ERRORS that occured after manually
> editing
> > the surface. Thanks for taking a look.
> >
> >
> > Also, I double checked - the original recon-all command finished with no errors. So it seems the
> > message occurs after surface editing. But the new reconstructed surfaces appear accurate, at least
> > with respect to gray and white matter boundaries. Let me know if there's anything else you need.
> >
> >
> > Thanks again,
> >
> > - Eli
> >
> > Houston Methodist. Leading Medicine.
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***CONFIDENTIALITY NOTICE*** This e-mail is the property of Houston Methodist and/or its relevant affiliates and may contain restricted and privileged material for the sole use of the intended recipient(s). Any review, use, distribution or disclosure by others is strictly prohibited. If you are not the intended recipient (or authorized to receive for the recipient), please contact the sender and delete all copies of the message. Thank you.