Tue Jul 17 14:20:34 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018 /xnat/apps/freesurfer/bin/recon-all -qcache -all -s assurgentMRI07112018 -sd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 -i /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-100-9axlp2.dcm subjid assurgentMRI07112018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Actual FREESURFER_HOME /xnat/apps/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 8192 memorylocked 64 kbytes maxproc 1024 total used free shared buffers cached Mem: 12198308 11429916 768392 0 623916 6533556 -/+ buffers/cache: 4272444 7925864 Swap: 4194296 525708 3668588 ######################################## program versions used $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $ $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $ mri_convert.bin -all-info ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $ mri_convert.bin --version stable6 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:37-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/17-19:20:37-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:37-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:38-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/17-19:20:38-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/17-19:20:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/17-19:20:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/17-19:20:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/17-19:20:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/17-19:20:41-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:41-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:42-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/17-19:20:42-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:43-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:43-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:44-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/17-19:20:46-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:46-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/17-19:20:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:49-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/17-19:20:49-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:50-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:50-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:51-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:51-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:52-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:52-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:52-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:53-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:53-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:54-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2018/07/17-19:20:54-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: tomcat Machine: hhvrixnatp01 Platform: Linux PlatformVersion: 2.6.32-431.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /xnat/apps/freesurfer/average GCA RB_all_2016-05-10.vc700.gca GCASkull RB_all_withskull_2016-05-10.vc700.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /xnat/apps/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018 mri_convert /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-100-9axlp2.dcm /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig/001.mgz mri_convert.bin /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-100-9axlp2.dcm /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig/001.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-100-9axlp2.dcm... Starting DICOMRead2() dcmfile = /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-100-9axlp2.dcm dcmdir = /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-100-9axlp2.dcm break DICOMRead.c:5228 Ref Series No = 301 Found 303 files, checking for dicoms ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-1-1w5dnci.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-10-7hi2d9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-100-9axlp2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-101-9axlp3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-102-9axlp4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-103-9axlp5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-104-9axlp6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-105-9ayvo9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-106-9ckzhb.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-107-9ckzhx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-108-9ckzhy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-109-9ckzhz.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-11-7hi2da.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-110-9ckzi0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-111-9clmhk.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-112-9clmhl.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-113-9clmhm.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-114-9eaa8s.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-115-9eax8c.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-116-9eax8d.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-117-9eax8z.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-118-9eax90.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-119-9eax91.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-12-7hjccd.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-120-9ec784.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-121-9ec785.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-122-9rgpiq.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-123-9rhzht.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-124-9rhzhu.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-125-9rhzhv.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-126-9rhzhw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-127-9rhzii.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-128-9rimi2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-129-9rimi3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-13-7hjcce.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-130-9t4qb5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-131-9t4qb6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-132-9t60a9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-133-9t60aa.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-134-9t60ab.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-135-9t60ac.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-136-9t60ad.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-137-9t60az.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-138-9u8yi7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-139-9u8yi8.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-14-7hjccf.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-140-9u8yi9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-141-9u8yia.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-142-9u8yib.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-143-9u9lhv.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-144-9u9lhw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-145-9u9lhx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-146-9vdto7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-147-9vegoc.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-148-9vegod.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-149-9vegoe.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-15-7hjccg.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-150-9vegof.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-151-1stx5aw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-152-1styf9z.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-153-1styfa0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-154-1styfa1.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-155-1styfa2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-156-1stz29m.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-157-1stz29n.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-158-1stz29o.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-159-1t74ujb.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-16-7hjcch.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-160-1t74ujx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-161-1t74ujy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-162-1t74ujz.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-163-1t764j2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-164-1t764j3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-165-1t764j4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-166-1t77ei7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-167-1t9vtix.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-168-1t9x3i0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-169-1t9x3i1.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-17-7hjzcm.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-170-1t9x40q.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-171-1t9x40r.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-172-1t9ydzu.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-173-1t9ydzv.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-174-1t9ydzw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-175-1tnnbvd.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-176-1tnnbve.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-177-1tnnbvf.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-178-1tnnbvg.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-179-1tnnbvh.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-18-7j8049.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-180-1tnnbw3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-181-1tnolv6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-182-1tnolv7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-183-1tpbcns.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-184-1tptvaz.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-185-1tptvb0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-186-1tptvb1.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-187-1tptvb2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-188-1tptvb3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-189-1tpv5a6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-19-7j804a.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-190-1tpv5as.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-191-1u49mnf.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-192-1u49mng.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-193-1u49mnh.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-194-1u4nod4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-195-1u4nod5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-196-1u4nod6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-197-1u4nod7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-198-1u4nodt.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-199-1u6b25x.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-2-7ffcvp.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-20-7j804b.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-200-1u6cc50.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-201-1u6cc51.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-202-1u6cc52.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-203-1u6cc53.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-204-1u6cc54.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-205-1u6cz4o.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-206-1u6cz4p.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-207-1u829ve.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-208-1u829w0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-209-1u829w1.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-21-7j9a3e.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-210-1u83jv4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-211-1u83jv5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-212-1u83jv6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-213-1u83jv7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-214-1u846ur.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-215-1ulb93g.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-216-1ulb93h.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-217-1ulb93i.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-218-1ulb944.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-219-1ulb945.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-22-7j9a3f.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-220-1ulpats.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-221-1ulpatt.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-222-1ulpatu.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-223-1undyl0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-224-1undyl1.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-225-1undyl2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-226-1undyl3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-227-1undyl4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-228-1unell9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-229-1unella.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-23-7j9a3g.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-230-1unellb.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-231-1up1zdf.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-232-1up1zdg.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-233-1up39cj.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-234-1up39ck.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-235-1up39cl.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-236-1up39cm.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-237-1up39cn.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-238-1up3wcs.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-239-1v2bll0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-24-7j9a3h.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-240-1v2cvk3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-241-1v2cvk4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-242-1v2cvk5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-243-1v2cvk6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-244-1v2cvk7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-245-1v2qx9u.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-246-1v2qx9v.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-247-1v4eb1z.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-248-1v4fl1n.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-249-1v4fl1o.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-25-7v7n98.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-250-1v4fl1p.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-251-1v4fl1q.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-252-1v4fl1r.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-253-1v4g81b.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-254-1v4g81c.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-255-1v63ltg.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-256-1v63lth.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-257-1v63lti.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-258-1v64wb9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-259-1v64wba.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-26-7wf2d5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-260-1v64wbb.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-261-1v64wbc.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-262-1v65jaw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-263-1vjd8j4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-264-1vjeii7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-265-1vjeii8.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-266-1vjeii9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-267-1vjeiia.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-268-1vjeiiw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-269-1vjsk8j.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-27-7wf2dr.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-270-1vjsk8k.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-271-1vlfy0o.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-272-1vlfy0p.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-273-1vlh7zs.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-274-1vlh7zt.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-275-1vlh7zu.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-276-1vlh7zv.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-277-1vlh7zw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-278-1vlhv01.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-279-1vn58s5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-28-7wf2ds.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-280-1vn58s6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-281-1vn58s7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-282-1vn58s8.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-283-1vn58s9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-284-1vn6irc.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-285-1vn6ird.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-286-1vn6ire.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-287-1w0euz5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-288-1w0euzr.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-289-1w0euzs.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-29-7wgccv.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-290-1w0g4yv.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-291-1w0g4yw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-292-1w0g4yx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-293-1w0g4yy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-294-1w0g4yz.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-295-1w5cdco.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-296-1w5cdcp.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-297-1w5cdcq.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-298-1w5cddc.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-299-1w5cddd.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-3-7ffcvq.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-30-7wgccw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-300-1w5dncg.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-301-1w5dnch.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-31-7wgccx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-32-7wgccy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-33-7wgzci.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-34-7y4d4m.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-35-7y4d4n.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-36-7y4d4o.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-37-7yieuw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-38-7yieux.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-39-7yieuy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-4-7ffcvr.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-40-7yieuz.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-41-7yjou2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-42-8072m6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-43-8072m7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-44-807plr.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-45-807pls.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-46-807plt.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-47-807pmf.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-48-807pmg.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-49-808zlj.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-5-7fu1kx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-50-8ddhw4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-51-8ddhw5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-52-8ddhw6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-53-8derv9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-54-8derva.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-55-8dervb.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-56-8dervc.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-57-8dg2d3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-58-8f434q.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-59-8f434r.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-6-7fu1ky.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-60-8f434s.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-61-8f434t.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-62-8f4q4d.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-63-8f4q4e.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-64-8f4q4f.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-65-8f603i.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-66-8gs3wk.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-67-8gtdw8.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-68-8gtdw9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-69-8gtdwa.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-7-7fu1lk.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-70-8gtdwb.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-71-8gtdwc.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-72-8h7flz.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-73-8h7fm0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-74-8tz661.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-75-8tz662.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-76-8tzt5m.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-77-8tzt68.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-78-8tzt69.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-79-8tzt6a.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-8-7fu1ll.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-80-8tzt6b.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-81-8uehvh.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-82-8w2in4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-83-8w2in5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-84-8w2in6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-85-8w2in7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-86-8w2in8.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-87-8w3smw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-88-8w3smx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-89-8w3smy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-9-7fuol5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-90-8xpwg0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-91-8xpwg1.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-92-8xqjfl.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-93-8xqjfm.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-94-8xqjfn.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-95-8xqjfo.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-96-8xqjfp.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-97-8xrtfd.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-98-9awbpy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-99-9awbpz.dcm break DICOMRead.c:5228 Found 301 dicom files in series. ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-1-1w5dnci.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-10-7hi2d9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-100-9axlp2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-101-9axlp3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-102-9axlp4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-103-9axlp5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-104-9axlp6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-105-9ayvo9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-106-9ckzhb.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-107-9ckzhx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-108-9ckzhy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-109-9ckzhz.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-11-7hi2da.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-110-9ckzi0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-111-9clmhk.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-112-9clmhl.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-113-9clmhm.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-114-9eaa8s.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-115-9eax8c.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-116-9eax8d.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-117-9eax8z.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-118-9eax90.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-119-9eax91.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-12-7hjccd.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-120-9ec784.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-121-9ec785.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-122-9rgpiq.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-123-9rhzht.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-124-9rhzhu.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-125-9rhzhv.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-126-9rhzhw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-127-9rhzii.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-128-9rimi2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-129-9rimi3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-13-7hjcce.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-130-9t4qb5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-131-9t4qb6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-132-9t60a9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-133-9t60aa.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-134-9t60ab.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-135-9t60ac.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-136-9t60ad.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-137-9t60az.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-138-9u8yi7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-139-9u8yi8.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-14-7hjccf.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-140-9u8yi9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-141-9u8yia.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-142-9u8yib.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-143-9u9lhv.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-144-9u9lhw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-145-9u9lhx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-146-9vdto7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-147-9vegoc.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-148-9vegod.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-149-9vegoe.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-15-7hjccg.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-150-9vegof.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-151-1stx5aw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-152-1styf9z.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-153-1styfa0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-154-1styfa1.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-155-1styfa2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-156-1stz29m.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-157-1stz29n.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-158-1stz29o.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-159-1t74ujb.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-16-7hjcch.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-160-1t74ujx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-161-1t74ujy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-162-1t74ujz.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-163-1t764j2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-164-1t764j3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-165-1t764j4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-166-1t77ei7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-167-1t9vtix.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-168-1t9x3i0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-169-1t9x3i1.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-17-7hjzcm.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-170-1t9x40q.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-171-1t9x40r.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-172-1t9ydzu.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-173-1t9ydzv.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-174-1t9ydzw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-175-1tnnbvd.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-176-1tnnbve.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-177-1tnnbvf.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-178-1tnnbvg.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-179-1tnnbvh.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-18-7j8049.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-180-1tnnbw3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-181-1tnolv6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-182-1tnolv7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-183-1tpbcns.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-184-1tptvaz.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-185-1tptvb0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-186-1tptvb1.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-187-1tptvb2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-188-1tptvb3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-189-1tpv5a6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-19-7j804a.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-190-1tpv5as.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-191-1u49mnf.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-192-1u49mng.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-193-1u49mnh.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-194-1u4nod4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-195-1u4nod5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-196-1u4nod6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-197-1u4nod7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-198-1u4nodt.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-199-1u6b25x.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-2-7ffcvp.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-20-7j804b.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-200-1u6cc50.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-201-1u6cc51.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-202-1u6cc52.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-203-1u6cc53.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-204-1u6cc54.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-205-1u6cz4o.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-206-1u6cz4p.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-207-1u829ve.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-208-1u829w0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-209-1u829w1.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-21-7j9a3e.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-210-1u83jv4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-211-1u83jv5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-212-1u83jv6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-213-1u83jv7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-214-1u846ur.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-215-1ulb93g.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-216-1ulb93h.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-217-1ulb93i.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-218-1ulb944.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-219-1ulb945.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-22-7j9a3f.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-220-1ulpats.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-221-1ulpatt.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-222-1ulpatu.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-223-1undyl0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-224-1undyl1.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-225-1undyl2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-226-1undyl3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-227-1undyl4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-228-1unell9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-229-1unella.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-23-7j9a3g.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-230-1unellb.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-231-1up1zdf.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-232-1up1zdg.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-233-1up39cj.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-234-1up39ck.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-235-1up39cl.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-236-1up39cm.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-237-1up39cn.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-238-1up3wcs.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-239-1v2bll0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-24-7j9a3h.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-240-1v2cvk3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-241-1v2cvk4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-242-1v2cvk5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-243-1v2cvk6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-244-1v2cvk7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-245-1v2qx9u.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-246-1v2qx9v.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-247-1v4eb1z.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-248-1v4fl1n.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-249-1v4fl1o.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-25-7v7n98.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-250-1v4fl1p.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-251-1v4fl1q.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-252-1v4fl1r.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-253-1v4g81b.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-254-1v4g81c.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-255-1v63ltg.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-256-1v63lth.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-257-1v63lti.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-258-1v64wb9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-259-1v64wba.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-26-7wf2d5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-260-1v64wbb.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-261-1v64wbc.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-262-1v65jaw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-263-1vjd8j4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-264-1vjeii7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-265-1vjeii8.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-266-1vjeii9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-267-1vjeiia.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-268-1vjeiiw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-269-1vjsk8j.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-27-7wf2dr.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-270-1vjsk8k.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-271-1vlfy0o.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-272-1vlfy0p.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-273-1vlh7zs.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-274-1vlh7zt.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-275-1vlh7zu.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-276-1vlh7zv.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-277-1vlh7zw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-278-1vlhv01.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-279-1vn58s5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-28-7wf2ds.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-280-1vn58s6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-281-1vn58s7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-282-1vn58s8.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-283-1vn58s9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-284-1vn6irc.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-285-1vn6ird.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-286-1vn6ire.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-287-1w0euz5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-288-1w0euzr.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-289-1w0euzs.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-29-7wgccv.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-290-1w0g4yv.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-291-1w0g4yw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-292-1w0g4yx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-293-1w0g4yy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-294-1w0g4yz.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-295-1w5cdco.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-296-1w5cdcp.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-297-1w5cdcq.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-298-1w5cddc.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-299-1w5cddd.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-3-7ffcvq.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-30-7wgccw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-300-1w5dncg.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-301-1w5dnch.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-31-7wgccx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-32-7wgccy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-33-7wgzci.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-34-7y4d4m.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-35-7y4d4n.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-36-7y4d4o.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-37-7yieuw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-38-7yieux.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-39-7yieuy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-4-7ffcvr.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-40-7yieuz.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-41-7yjou2.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-42-8072m6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-43-8072m7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-44-807plr.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-45-807pls.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-46-807plt.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-47-807pmf.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-48-807pmg.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-49-808zlj.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-5-7fu1kx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-50-8ddhw4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-51-8ddhw5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-52-8ddhw6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-53-8derv9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-54-8derva.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-55-8dervb.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-56-8dervc.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-57-8dg2d3.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-58-8f434q.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-59-8f434r.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-6-7fu1ky.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-60-8f434s.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-61-8f434t.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-62-8f4q4d.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-63-8f4q4e.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-64-8f4q4f.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-65-8f603i.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-66-8gs3wk.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-67-8gtdw8.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-68-8gtdw9.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-69-8gtdwa.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-7-7fu1lk.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-70-8gtdwb.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-71-8gtdwc.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-72-8h7flz.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-73-8h7fm0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-74-8tz661.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-75-8tz662.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-76-8tzt5m.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-77-8tzt68.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-78-8tzt69.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-79-8tzt6a.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-8-7fu1ll.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-80-8tzt6b.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-81-8uehvh.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-82-8w2in4.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-83-8w2in5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-84-8w2in6.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-85-8w2in7.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-86-8w2in8.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-87-8w3smw.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-88-8w3smx.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-89-8w3smy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-9-7fuol5.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-90-8xpwg0.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-91-8xpwg1.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-92-8xqjfl.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-93-8xqjfm.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-94-8xqjfn.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-95-8xqjfo.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-96-8xqjfp.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-97-8xrtfd.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-98-9awbpy.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from --Philips Healthcare-- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /data/build/nnac/20180717_142006/assurgentMRI07112018/RAW/301/1.3.46.670589.11.42034.5.0.8396.2018071111250778020-301-99-9awbpz.dcm break DICOMRead.c:5228 First Sorting Computing Slice Direction Vs: -0.595001 -0.00827217 -0.0768089 Vs: -0.991676 -0.0137871 -0.128016 Second Sorting IsDWI = 1, IsPhilipsDWI = 0 Counting frames nframes = 1 nslices = 301 ndcmfiles = 301 PE Dir = ROW (dicom read) Loading pixel data TR=7.51, TE=3.48, TI=0.00, flip angle=8.00 i_ras = (0.0139016, -0.999903, -1.08839e-10) j_ras = (-0.128002, -0.00177961, -0.991772) k_ras = (0.991676, 0.0137871, -0.128016) writing to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig/001.mgz... Saving bvals and bvecs #-------------------------------------------- #@# MotionCor Tue Jul 17 14:21:06 CDT 2018 Found 1 runs /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue. cp /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig/001.mgz /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/rawavg.mgz /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018 mri_convert /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/rawavg.mgz /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig.mgz --conform mri_convert.bin /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/rawavg.mgz /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/rawavg.mgz... TR=7.51, TE=3.48, TI=0.00, flip angle=8.00 i_ras = (0.0139016, -0.999903, -1.08839e-10) j_ras = (-0.128002, -0.00177961, -0.991772) k_ras = (0.991676, 0.0137871, -0.128016) changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig.mgz... mri_add_xform_to_header -c /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/transforms/talairach.xfm /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig.mgz /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig.mgz INFO: extension is mgz #-------------------------------------------- #@# Talairach Tue Jul 17 14:21:18 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri /xnat/apps/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 nIters 1 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux Tue Jul 17 14:21:18 CDT 2018 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is ./tmp.mri_nu_correct.mni.9538 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.9538/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.9538/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig.mgz... TR=7.51, TE=3.48, TI=0.00, flip angle=8.00 i_ras = (-1, -9.31323e-10, 1.49012e-08) j_ras = (-1.49012e-08, -2.32831e-10, -1) k_ras = (0, 1, -1.16415e-10) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.9538/nu0.mnc... -------------------------------------------------------- Iteration 1 Tue Jul 17 14:21:21 CDT 2018 nu_correct -clobber ./tmp.mri_nu_correct.mni.9538/nu0.mnc ./tmp.mri_nu_correct.mni.9538/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.9538/0/ -iterations 1000 -distance 50 [tomcat@hhvrixnatp01:/data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/] [2018-07-17 14:21:21] running: /xnat/apps/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.9538/0/ ./tmp.mri_nu_correct.mni.9538/nu0.mnc ./tmp.mri_nu_correct.mni.9538/nu1.imp Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Number of iterations: 39 CV of field change: 0.00099356 mri_convert ./tmp.mri_nu_correct.mni.9538/nu1.mnc orig_nu.mgz --like orig.mgz --conform mri_convert.bin ./tmp.mri_nu_correct.mni.9538/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.9538/nu1.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -9.31323e-10, 1.49012e-08) j_ras = (-1.49012e-08, -2.32831e-10, -1) k_ras = (0, 1, -1.16415e-10) INFO: transform src into the like-volume: orig.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to orig_nu.mgz... Tue Jul 17 14:22:31 CDT 2018 mri_nu_correct.mni done talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... Started at Tue Jul 17 14:22:32 CDT 2018 Ended at Tue Jul 17 14:23:09 CDT 2018 talairach_avi done cp transforms/talairach.auto.xfm transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Tue Jul 17 14:23:11 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.6508, pval=0.3663 >= threshold=0.0050) awk -f /xnat/apps/freesurfer/bin/extract_talairach_avi_QA.awk /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/transforms/talairach_avi.log tal_QC_AZS /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/transforms/talairach_avi.log TalAviQA: 0.96066 z-score: -3 #-------------------------------------------- #@# Nu Intensity Correction Tue Jul 17 14:23:12 CDT 2018 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri /xnat/apps/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux Tue Jul 17 14:23:12 CDT 2018 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is ./tmp.mri_nu_correct.mni.10297 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.10297/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.10297/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig.mgz... TR=7.51, TE=3.48, TI=0.00, flip angle=8.00 i_ras = (-1, -9.31323e-10, 1.49012e-08) j_ras = (-1.49012e-08, -2.32831e-10, -1) k_ras = (0, 1, -1.16415e-10) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.10297/nu0.mnc... -------------------------------------------------------- Iteration 1 Tue Jul 17 14:23:14 CDT 2018 nu_correct -clobber ./tmp.mri_nu_correct.mni.10297/nu0.mnc ./tmp.mri_nu_correct.mni.10297/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.10297/0/ [tomcat@hhvrixnatp01:/data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/] [2018-07-17 14:23:14] running: /xnat/apps/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.10297/0/ ./tmp.mri_nu_correct.mni.10297/nu0.mnc ./tmp.mri_nu_correct.mni.10297/nu1.imp Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done 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Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Number of iterations: 31 CV of field change: 0.000972113 -------------------------------------------------------- Iteration 2 Tue Jul 17 14:24:03 CDT 2018 nu_correct -clobber ./tmp.mri_nu_correct.mni.10297/nu1.mnc ./tmp.mri_nu_correct.mni.10297/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.10297/1/ [tomcat@hhvrixnatp01:/data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/] [2018-07-17 14:24:03] running: /xnat/apps/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.10297/1/ ./tmp.mri_nu_correct.mni.10297/nu1.mnc ./tmp.mri_nu_correct.mni.10297/nu2.imp Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done 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Processing:.................................................................Done Number of iterations: 21 CV of field change: 0.000962844 mri_binarize --i ./tmp.mri_nu_correct.mni.10297/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.10297/ones.mgz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri cmdline mri_binarize.bin --i ./tmp.mri_nu_correct.mni.10297/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.10297/ones.mgz sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat input ./tmp.mri_nu_correct.mni.10297/nu2.mnc frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.10297/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777216 voxels in final mask Count: 16777216 16777216.000000 16777216 100.000000 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.10297/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.10297/sum.junk --avgwf ./tmp.mri_nu_correct.mni.10297/input.mean.dat $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.10297/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.10297/sum.junk --avgwf ./tmp.mri_nu_correct.mni.10297/input.mean.dat sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat UseRobust 0 Loading ./tmp.mri_nu_correct.mni.10297/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.10297/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.10297/ones.mgz --i ./tmp.mri_nu_correct.mni.10297/nu2.mnc --sum ./tmp.mri_nu_correct.mni.10297/sum.junk --avgwf ./tmp.mri_nu_correct.mni.10297/output.mean.dat $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.10297/ones.mgz --i ./tmp.mri_nu_correct.mni.10297/nu2.mnc --sum ./tmp.mri_nu_correct.mni.10297/sum.junk --avgwf ./tmp.mri_nu_correct.mni.10297/output.mean.dat sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat UseRobust 0 Loading ./tmp.mri_nu_correct.mni.10297/ones.mgz Loading ./tmp.mri_nu_correct.mni.10297/nu2.mnc Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.10297/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.10297/nu2.mnc ./tmp.mri_nu_correct.mni.10297/nu2.mnc mul 1.06236819614898543298 Saving result to './tmp.mri_nu_correct.mni.10297/nu2.mnc' (type = MINC ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.10297/nu2.mnc nu.mgz --like orig.mgz mri_convert.bin ./tmp.mri_nu_correct.mni.10297/nu2.mnc nu.mgz --like orig.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.10297/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -9.31323e-10, 1.49012e-08) j_ras = (-1.49012e-08, -2.32831e-10, -1) k_ras = (0, 1, -1.16415e-10) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 9 seconds. mapping ( 7, 178) to ( 3, 110) Tue Jul 17 14:25:26 CDT 2018 mri_nu_correct.mni done mri_add_xform_to_header -c /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization Tue Jul 17 14:25:27 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_normalize -g 1 -mprage nu.mgz T1.mgz using max gradient = 1.000 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading from nu.mgz... normalizing image... talairach transform 1.04096 0.03625 -0.15333 -6.88027; -0.03364 1.03755 0.03434 -33.37975; 0.17574 -0.03964 1.15621 -3.02303; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 19 Starting OpenSpline(): npoints = 19 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 54 (54), valley at 42 (42) csf peak at 27, setting threshold to 45 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 83 (83), valley at 71 (71) csf peak at 42, setting threshold to 69 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 2 minutes and 8 seconds. #-------------------------------------------- #@# Skull Stripping Tue Jul 17 14:27:36 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_em_register -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mri_em_register.skull.dat -skull nu.mgz /xnat/apps/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 5 == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach_with_skull.log reading '/xnat/apps/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca'... average std = 22.9 using min determinant for regularization = 52.6 0 singular and 9002 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 8.7 or > 569.1 total sample mean = 77.6 (1399 zeros) ************************************************ spacing=8, using 3243 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3243, passno 0, spacing 8 resetting wm mean[0]: 100 --> 108 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=10.0 skull bounding box = (54, 29, 24) --> (209, 255, 224) using (106, 104, 124) as brain centroid... mean wm in atlas = 108, using box (87,76,99) --> (125, 131,148) to find MRI wm before smoothing, mri peak at 105 robust fit to distribution - 106 +- 8.1 after smoothing, mri peak at 106, scaling input intensities by 1.019 scaling channel 0 by 1.01887 initial log_p = -4.474 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.442692 @ (-9.091, 9.091, -9.091) max log p = -4.354666 @ (4.545, -4.545, -4.545) max log p = -4.305943 @ (2.273, 2.273, 2.273) max log p = -4.293299 @ (-1.136, 1.136, -1.136) max log p = -4.287642 @ (1.705, -6.250, 0.568) max log p = -4.278181 @ (-0.284, -0.852, -0.284) Found translation: (-2.0, 0.9, -12.2): log p = -4.278 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.051, old_max_log_p =-4.278 (thresh=-4.3) 1.14016 -0.15011 0.00000 -8.01483; 0.16136 1.22567 0.00000 -35.52447; 0.00000 0.00000 1.00000 -12.21591; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.032, old_max_log_p =-4.051 (thresh=-4.0) 1.05465 -0.13885 0.00000 1.95193; 0.16136 1.22567 0.00000 -35.52447; 0.00000 0.00000 1.00000 -12.21591; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 2 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.032, old_max_log_p =-4.032 (thresh=-4.0) 1.05465 -0.13885 0.00000 1.95193; 0.16136 1.22567 0.00000 -35.52447; 0.00000 0.00000 1.00000 -12.21591; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.922, old_max_log_p =-4.032 (thresh=-4.0) 1.07248 -0.14414 -0.03457 6.38206; 0.15573 1.20323 -0.00194 -31.67414; 0.03365 -0.00166 0.99954 -16.43415; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.922, old_max_log_p =-3.922 (thresh=-3.9) 1.07248 -0.14414 -0.03457 6.38206; 0.15573 1.20323 -0.00194 -31.67414; 0.03365 -0.00166 0.99954 -16.43415; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.904, old_max_log_p =-3.922 (thresh=-3.9) 1.07245 -0.13414 -0.03454 5.10461; 0.14660 1.20155 -0.00165 -30.29374; 0.03369 -0.00166 1.00071 -16.11464; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.904, old_max_log_p =-3.904 (thresh=-3.9) 1.07245 -0.13414 -0.03454 5.10461; 0.14660 1.20155 -0.00165 -30.29374; 0.03369 -0.00166 1.00071 -16.11464; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3243 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.07245 -0.13414 -0.03454 5.10461; 0.14660 1.20155 -0.00165 -30.29374; 0.03369 -0.00166 1.00071 -16.11464; 0.00000 0.00000 0.00000 1.00000; nsamples 3243 Quasinewton: input matrix 1.07245 -0.13414 -0.03454 5.10461; 0.14660 1.20155 -0.00165 -30.29374; 0.03369 -0.00166 1.00071 -16.11464; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 009: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.07245 -0.13414 -0.03454 5.10461; 0.14660 1.20155 -0.00165 -30.29374; 0.03369 -0.00166 1.00071 -16.11464; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.904 (old=-4.474) transform before final EM align: 1.07245 -0.13414 -0.03454 5.10461; 0.14660 1.20155 -0.00165 -30.29374; 0.03369 -0.00166 1.00071 -16.11464; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 364799 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.07245 -0.13414 -0.03454 5.10461; 0.14660 1.20155 -0.00165 -30.29374; 0.03369 -0.00166 1.00071 -16.11464; 0.00000 0.00000 0.00000 1.00000; nsamples 364799 Quasinewton: input matrix 1.07245 -0.13414 -0.03454 5.10461; 0.14660 1.20155 -0.00165 -30.29374; 0.03369 -0.00166 1.00071 -16.11464; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 011: -log(p) = 4.2 tol 0.000000 final transform: 1.07245 -0.13414 -0.03454 5.10461; 0.14660 1.20155 -0.00165 -30.29374; 0.03369 -0.00166 1.00071 -16.11464; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach_with_skull.lta... mri_em_register utimesec 1189.924104 mri_em_register stimesec 2.237659 mri_em_register ru_maxrss 609744 mri_em_register ru_ixrss 0 mri_em_register ru_idrss 0 mri_em_register ru_isrss 0 mri_em_register ru_minflt 162407 mri_em_register ru_majflt 8 mri_em_register ru_nswap 0 mri_em_register ru_inblock 150264 mri_em_register ru_oublock 32 mri_em_register ru_msgsnd 0 mri_em_register ru_msgrcv 0 mri_em_register ru_nsignals 0 mri_em_register ru_nvcsw 131 mri_em_register ru_nivcsw 2107 registration took 19 minutes and 52 seconds. mri_watershed -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mri_watershed.dat -T1 -brain_atlas /xnat/apps/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=130 y=107 z=121 r=88 first estimation of the main basin volume: 2904732 voxels Looking for seedpoints 2 found in the cerebellum 15 found in the rest of the brain global maximum in x=147, y=88, z=86, Imax=255 CSF=13, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=8321600747 voxels, voxel volume =1.000 = 8321600747 mmm3 = 8321600.512 cm3 done. PostAnalyze...Basin Prior 17 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=129,y=112, z=116, r=9959 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=0, CSF_intensity=9, CSF_MAX=33 , nb = 45242 RIGHT_CER CSF_MIN=0, CSF_intensity=9, CSF_MAX=35 , nb = -1036767343 LEFT_CER CSF_MIN=0, CSF_intensity=7, CSF_MAX=30 , nb = 1085322642 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=9, CSF_MAX=29 , nb = 1090829066 LEFT_BRAIN CSF_MIN=0, CSF_intensity=9, CSF_MAX=37 , nb = 1073146364 OTHER CSF_MIN=0, CSF_intensity=4, CSF_MAX=50 , nb = 1075471568 Problem with the least square interpolation in GM_MIN calculation. CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 33, 26, 5, 78 after analyzing : 21, 26, 26, 39 RIGHT_CER before analyzing : 35, 46, 57, 80 after analyzing : 35, 53, 57, 59 LEFT_CER before analyzing : 30, 43, 57, 80 after analyzing : 30, 52, 57, 59 RIGHT_BRAIN before analyzing : 29, 23, 5, 76 after analyzing : 23, 24, 25, 37 LEFT_BRAIN before analyzing : 37, 28, 10, 66 after analyzing : 23, 28, 28, 37 OTHER before analyzing : 50, 27, 20, 34 after analyzing : 18, 27, 27, 28 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...70 iterations *********************VALIDATION********************* curvature mean = -0.013, std = 0.011 curvature mean = 67.360, std = 8.186 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 4.58, sigma = 6.99 after rotation: sse = 4.58, sigma = 6.99 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 5.16, its var is 7.29 before Erosion-Dilatation 2.14% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...38 iterations mri_strip_skull: done peeling brain Brain Size = 1483050 voxels, voxel volume = 1.000 mm3 = 1483050 mmm3 = 1483.050 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 21.461737 mri_watershed stimesec 0.419936 mri_watershed ru_maxrss 836848 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 214540 mri_watershed ru_majflt 10 mri_watershed ru_nswap 0 mri_watershed ru_inblock 18032 mri_watershed ru_oublock 2448 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 90 mri_watershed ru_nivcsw 129 mri_watershed done cp brainmask.auto.mgz brainmask.mgz #------------------------------------- #@# EM Registration Tue Jul 17 14:47:51 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_em_register -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mri_em_register.dat -uns 3 -mask brainmask.mgz nu.mgz /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca'... average std = 7.3 using min determinant for regularization = 5.3 0 singular and 841 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 6.3 or > 503.7 total sample mean = 78.8 (1011 zeros) ************************************************ spacing=8, using 2830 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2830, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=12.0 skull bounding box = (63, 54, 34) --> (195, 162, 205) using (107, 90, 120) as brain centroid... mean wm in atlas = 107, using box (91,77,99) --> (123, 103,141) to find MRI wm before smoothing, mri peak at 105 robust fit to distribution - 106 +- 5.4 after smoothing, mri peak at 105, scaling input intensities by 1.019 scaling channel 0 by 1.01905 initial log_p = -4.318 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.110045 @ (-9.091, 9.091, -9.091) max log p = -4.060243 @ (4.545, -4.545, -4.545) max log p = -4.010061 @ (2.273, 2.273, 2.273) max log p = -3.966578 @ (-1.136, -1.136, 1.136) max log p = -3.953524 @ (0.568, 0.568, -1.705) max log p = -3.953524 @ (0.000, 0.000, 0.000) Found translation: (-2.8, 6.2, -11.9): log p = -3.954 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.781, old_max_log_p =-3.954 (thresh=-3.9) 1.07125 -0.11999 0.00000 1.48971; 0.18169 1.22023 0.00000 -34.68783; 0.00000 0.00000 1.00000 -11.93182; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.781, old_max_log_p =-3.781 (thresh=-3.8) 1.07125 -0.11999 0.00000 1.48971; 0.18169 1.22023 0.00000 -34.68783; 0.00000 0.00000 1.00000 -11.93182; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.651, old_max_log_p =-3.781 (thresh=-3.8) 1.05060 -0.11767 -0.03211 7.67233; 0.17488 1.17447 0.00000 -32.66366; 0.03571 -0.00400 1.01820 -18.24341; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.647, old_max_log_p =-3.651 (thresh=-3.6) 1.04432 -0.15604 -0.03209 12.70787; 0.20916 1.16999 -0.00105 -36.47799; 0.03571 -0.00400 1.01820 -18.24341; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.647, old_max_log_p =-3.647 (thresh=-3.6) 1.04432 -0.15604 -0.03209 12.70787; 0.20916 1.16999 -0.00105 -36.47799; 0.03571 -0.00400 1.01820 -18.24341; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.614, old_max_log_p =-3.647 (thresh=-3.6) 1.05035 -0.12756 -0.03203 7.37858; 0.18436 1.17612 0.00835 -34.57470; 0.03416 -0.01392 1.01936 -17.53963; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.610, old_max_log_p =-3.614 (thresh=-3.6) 1.05004 -0.13732 -0.03207 8.49174; 0.19200 1.17098 -0.00027 -33.99434; 0.03566 -0.00432 1.01940 -18.79136; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.607, old_max_log_p =-3.610 (thresh=-3.6) 1.05004 -0.13732 -0.03207 8.49174; 0.19200 1.17098 -0.00027 -33.99434; 0.03575 -0.00433 1.02178 -19.08254; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2830 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.05004 -0.13732 -0.03207 8.49174; 0.19200 1.17098 -0.00027 -33.99434; 0.03575 -0.00433 1.02178 -19.08254; 0.00000 0.00000 0.00000 1.00000; nsamples 2830 Quasinewton: input matrix 1.05004 -0.13732 -0.03207 8.49174; 0.19200 1.17098 -0.00027 -33.99434; 0.03575 -0.00433 1.02178 -19.08254; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.05004 -0.13732 -0.03207 8.49174; 0.19200 1.17098 -0.00027 -33.99434; 0.03575 -0.00433 1.02178 -19.08254; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.607 (old=-4.318) transform before final EM align: 1.05004 -0.13732 -0.03207 8.49174; 0.19200 1.17098 -0.00027 -33.99434; 0.03575 -0.00433 1.02178 -19.08254; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315557 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.05004 -0.13732 -0.03207 8.49174; 0.19200 1.17098 -0.00027 -33.99434; 0.03575 -0.00433 1.02178 -19.08254; 0.00000 0.00000 0.00000 1.00000; nsamples 315557 Quasinewton: input matrix 1.05004 -0.13732 -0.03207 8.49174; 0.19200 1.17098 -0.00027 -33.99434; 0.03575 -0.00433 1.02178 -19.08254; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 012: -log(p) = 4.0 tol 0.000000 final transform: 1.05004 -0.13732 -0.03207 8.49174; 0.19200 1.17098 -0.00027 -33.99434; 0.03575 -0.00433 1.02178 -19.08254; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... mri_em_register utimesec 1165.907755 mri_em_register stimesec 2.587606 mri_em_register ru_maxrss 598968 mri_em_register ru_ixrss 0 mri_em_register ru_idrss 0 mri_em_register ru_isrss 0 mri_em_register ru_minflt 163165 mri_em_register ru_majflt 0 mri_em_register ru_nswap 0 mri_em_register ru_inblock 142600 mri_em_register ru_oublock 24 mri_em_register ru_msgsnd 0 mri_em_register ru_msgrcv 0 mri_em_register ru_nsignals 0 mri_em_register ru_nvcsw 87 mri_em_register ru_nivcsw 2704 registration took 19 minutes and 29 seconds. #-------------------------------------- #@# CA Normalize Tue Jul 17 15:07:20 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=13.0 skull bounding box = (63, 54, 34) --> (195, 161, 205) using (107, 90, 120) as brain centroid... mean wm in atlas = 107, using box (91,77,99) --> (123, 103,141) to find MRI wm before smoothing, mri peak at 105 robust fit to distribution - 106 +- 5.4 after smoothing, mri peak at 105, scaling input intensities by 1.019 scaling channel 0 by 1.01905 using 246344 sample points... INFO: compute sample coordinates transform 1.05004 -0.13732 -0.03207 8.49174; 0.19200 1.17098 -0.00027 -33.99434; 0.03575 -0.00433 1.02178 -19.08254; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (126, 50, 40) --> (194, 148, 204) Left_Cerebral_White_Matter: limiting intensities to 95.0 --> 132.0 0 of 2107 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (68, 55, 41) --> (133, 159, 205) Right_Cerebral_White_Matter: limiting intensities to 97.0 --> 132.0 0 of 1940 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (133, 125, 61) --> (181, 157, 114) Left_Cerebellum_White_Matter: limiting intensities to 104.0 --> 132.0 0 of 392 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (93, 125, 60) --> (133, 164, 117) Right_Cerebellum_White_Matter: limiting intensities to 109.0 --> 132.0 0 of 250 (0.0%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (117, 117, 95) --> (152, 177, 126) Brain_Stem: limiting intensities to 99.0 --> 132.0 1 of 585 (0.2%) samples deleted using 5274 total control points for intensity normalization... bias field = 0.909 +- 0.101 0 of 5273 control points discarded finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (126, 50, 40) --> (194, 148, 204) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 130.0 1 of 2837 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (68, 55, 41) --> (133, 159, 205) Right_Cerebral_White_Matter: limiting intensities to 89.0 --> 130.0 0 of 2406 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (133, 125, 61) --> (181, 157, 114) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 130.0 5 of 459 (1.1%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (93, 125, 60) --> (133, 164, 117) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 130.0 3 of 288 (1.0%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (117, 117, 95) --> (152, 177, 126) Brain_Stem: limiting intensities to 88.0 --> 130.0 172 of 795 (21.6%) samples deleted using 6785 total control points for intensity normalization... bias field = 1.015 +- 0.063 3 of 6523 control points discarded finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (126, 50, 40) --> (194, 148, 204) Left_Cerebral_White_Matter: limiting intensities to 89.0 --> 131.0 1 of 2995 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (68, 55, 41) --> (133, 159, 205) Right_Cerebral_White_Matter: limiting intensities to 90.0 --> 131.0 2 of 2432 (0.1%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (133, 125, 61) --> (181, 157, 114) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 131.0 97 of 479 (20.3%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (93, 125, 60) --> (133, 164, 117) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 131.0 69 of 317 (21.8%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (117, 117, 95) --> (152, 177, 126) Brain_Stem: limiting intensities to 88.0 --> 131.0 482 of 816 (59.1%) samples deleted using 7039 total control points for intensity normalization... bias field = 1.016 +- 0.044 26 of 6304 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 1 minutes and 37 seconds. #-------------------------------------- #@# CA Reg Tue Jul 17 15:08:57 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_ca_register -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mri_ca_register.dat -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_ca_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca'... label assignment complete, 0 changed (0.00%) det(m_affine) = 1.28 (predicted orig area = 6.2) label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.039 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.996, neg=0, invalid=762 0001: dt=208.444444, rms=0.910 (8.612%), neg=0, invalid=762 0002: dt=275.221122, rms=0.886 (2.695%), neg=0, invalid=762 0003: dt=260.253776, rms=0.873 (1.414%), neg=0, invalid=762 0004: dt=175.191919, rms=0.867 (0.728%), neg=0, invalid=762 0005: dt=517.888000, rms=0.855 (1.302%), neg=0, invalid=762 0006: dt=129.472000, rms=0.852 (0.368%), neg=0, invalid=762 0007: dt=3551.232000, rms=0.825 (3.218%), neg=0, invalid=762 0008: dt=295.936000, rms=0.820 (0.618%), neg=0, invalid=762 0009: dt=129.472000, rms=0.819 (0.124%), neg=0, invalid=762 0010: dt=129.472000, rms=0.817 (0.152%), neg=0, invalid=762 0011: dt=129.472000, rms=0.816 (0.222%), neg=0, invalid=762 0012: dt=129.472000, rms=0.814 (0.234%), neg=0, invalid=762 0013: dt=129.472000, rms=0.812 (0.220%), neg=0, invalid=762 0014: dt=129.472000, rms=0.810 (0.230%), neg=0, invalid=762 0015: dt=129.472000, rms=0.808 (0.255%), neg=0, invalid=762 0016: dt=129.472000, rms=0.806 (0.301%), neg=0, invalid=762 0017: dt=129.472000, rms=0.803 (0.349%), neg=0, invalid=762 0018: dt=129.472000, rms=0.800 (0.380%), neg=0, invalid=762 0019: dt=129.472000, rms=0.796 (0.413%), neg=0, invalid=762 0020: dt=129.472000, rms=0.793 (0.416%), neg=0, invalid=762 0021: dt=129.472000, rms=0.790 (0.408%), neg=0, invalid=762 0022: dt=129.472000, rms=0.787 (0.392%), neg=0, invalid=762 0023: dt=129.472000, rms=0.784 (0.385%), neg=0, invalid=762 0024: dt=129.472000, rms=0.781 (0.352%), neg=0, invalid=762 0025: dt=129.472000, rms=0.778 (0.326%), neg=0, invalid=762 0026: dt=129.472000, rms=0.776 (0.293%), neg=0, invalid=762 0027: dt=129.472000, rms=0.774 (0.271%), neg=0, invalid=762 0028: dt=129.472000, rms=0.772 (0.261%), neg=0, invalid=762 0029: dt=129.472000, rms=0.770 (0.243%), neg=0, invalid=762 0030: dt=129.472000, rms=0.768 (0.238%), neg=0, invalid=762 0031: dt=129.472000, rms=0.767 (0.211%), neg=0, invalid=762 0032: dt=129.472000, rms=0.765 (0.201%), neg=0, invalid=762 0033: dt=129.472000, rms=0.764 (0.190%), neg=0, invalid=762 0034: dt=129.472000, rms=0.762 (0.165%), neg=0, invalid=762 0035: dt=129.472000, rms=0.761 (0.153%), neg=0, invalid=762 0036: dt=129.472000, rms=0.760 (0.137%), neg=0, invalid=762 0037: dt=129.472000, rms=0.759 (0.124%), neg=0, invalid=762 0038: dt=129.472000, rms=0.758 (0.128%), neg=0, invalid=762 0039: dt=129.472000, rms=0.757 (0.128%), neg=0, invalid=762 0040: dt=129.472000, rms=0.756 (0.120%), neg=0, invalid=762 0041: dt=129.472000, rms=0.756 (0.106%), neg=0, invalid=762 0042: dt=517.888000, rms=0.756 (0.009%), neg=0, invalid=762 0043: dt=517.888000, rms=0.755 (0.094%), neg=0, invalid=762 0044: dt=517.888000, rms=0.755 (-0.179%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.756, neg=0, invalid=762 0045: dt=110.976000, rms=0.754 (0.242%), neg=0, invalid=762 0046: dt=221.952000, rms=0.754 (0.071%), neg=0, invalid=762 0047: dt=221.952000, rms=0.753 (0.053%), neg=0, invalid=762 0048: dt=221.952000, rms=0.753 (0.050%), neg=0, invalid=762 0049: dt=221.952000, rms=0.753 (0.009%), neg=0, invalid=762 setting smoothness coefficient to 0.154 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.761, neg=0, invalid=762 0050: dt=175.679083, rms=0.750 (1.496%), neg=0, invalid=762 0051: dt=178.558767, rms=0.735 (2.020%), neg=0, invalid=762 0052: dt=77.238095, rms=0.727 (1.091%), neg=0, invalid=762 0053: dt=145.152000, rms=0.722 (0.746%), neg=0, invalid=762 0054: dt=164.896797, rms=0.714 (1.016%), neg=0, invalid=762 0055: dt=72.615385, rms=0.711 (0.438%), neg=0, invalid=762 0056: dt=228.705882, rms=0.705 (0.919%), neg=0, invalid=762 0057: dt=62.171429, rms=0.701 (0.496%), neg=0, invalid=762 0058: dt=414.720000, rms=0.693 (1.114%), neg=0, invalid=762 0059: dt=51.450980, rms=0.690 (0.529%), neg=0, invalid=762 0060: dt=580.608000, rms=0.682 (1.110%), neg=0, invalid=762 0061: dt=36.288000, rms=0.681 (0.191%), neg=0, invalid=762 0062: dt=36.288000, rms=0.680 (0.053%), neg=0, invalid=762 0063: dt=36.288000, rms=0.680 (0.074%), neg=0, invalid=762 0064: dt=36.288000, rms=0.679 (0.108%), neg=0, invalid=762 0065: dt=36.288000, rms=0.678 (0.167%), neg=0, invalid=762 0066: dt=36.288000, rms=0.677 (0.195%), neg=0, invalid=762 0067: dt=36.288000, rms=0.675 (0.189%), neg=0, invalid=762 0068: dt=36.288000, rms=0.674 (0.199%), neg=0, invalid=762 0069: dt=36.288000, rms=0.673 (0.200%), neg=0, invalid=762 0070: dt=36.288000, rms=0.671 (0.198%), neg=0, invalid=762 0071: dt=36.288000, rms=0.670 (0.212%), neg=0, invalid=762 0072: dt=36.288000, rms=0.668 (0.229%), neg=0, invalid=762 0073: dt=36.288000, rms=0.667 (0.225%), neg=0, invalid=762 0074: dt=36.288000, rms=0.665 (0.207%), neg=0, invalid=762 0075: dt=36.288000, rms=0.664 (0.186%), neg=0, invalid=762 0076: dt=36.288000, rms=0.663 (0.169%), neg=0, invalid=762 0077: dt=36.288000, rms=0.662 (0.157%), neg=0, invalid=762 0078: dt=36.288000, rms=0.661 (0.166%), neg=0, invalid=762 0079: dt=36.288000, rms=0.660 (0.165%), neg=0, invalid=762 0080: dt=36.288000, rms=0.659 (0.156%), neg=0, invalid=762 0081: dt=36.288000, rms=0.658 (0.141%), neg=0, invalid=762 0082: dt=36.288000, rms=0.657 (0.123%), neg=0, invalid=762 0083: dt=36.288000, rms=0.656 (0.107%), neg=0, invalid=762 0084: dt=103.680000, rms=0.656 (0.010%), neg=0, invalid=762 0085: dt=103.680000, rms=0.656 (0.006%), neg=0, invalid=762 0086: dt=103.680000, rms=0.656 (0.034%), neg=0, invalid=762 0087: dt=103.680000, rms=0.656 (0.052%), neg=0, invalid=762 0088: dt=103.680000, rms=0.655 (0.048%), neg=0, invalid=762 0089: dt=103.680000, rms=0.655 (0.076%), neg=0, invalid=762 0090: dt=103.680000, rms=0.654 (0.100%), neg=0, invalid=762 0091: dt=103.680000, rms=0.654 (0.079%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.656, neg=0, invalid=762 0092: dt=36.288000, rms=0.653 (0.357%), neg=0, invalid=762 0093: dt=36.288000, rms=0.653 (0.032%), neg=0, invalid=762 0094: dt=36.288000, rms=0.653 (0.015%), neg=0, invalid=762 0095: dt=36.288000, rms=0.653 (-0.016%), neg=0, invalid=762 setting smoothness coefficient to 0.588 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.684, neg=0, invalid=762 0096: dt=0.000000, rms=0.682 (0.267%), neg=0, invalid=762 0097: dt=0.000000, rms=0.682 (0.000%), neg=0, invalid=762 0098: dt=0.250000, rms=0.682 (-0.008%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.684, neg=0, invalid=762 0099: dt=0.000000, rms=0.682 (0.267%), neg=0, invalid=762 0100: dt=0.000000, rms=0.682 (0.000%), neg=0, invalid=762 0101: dt=0.250000, rms=0.682 (-0.009%), neg=0, invalid=762 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.770, neg=0, invalid=762 0102: dt=4.218884, rms=0.753 (2.260%), neg=0, invalid=762 0103: dt=1.008000, rms=0.752 (0.066%), neg=0, invalid=762 0104: dt=1.008000, rms=0.752 (-0.001%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.754, neg=0, invalid=762 0105: dt=0.000703, rms=0.752 (0.202%), neg=0, invalid=762 0106: dt=0.000000, rms=0.752 (0.000%), neg=0, invalid=762 0107: dt=0.150000, rms=0.752 (-0.001%), neg=0, invalid=762 setting smoothness coefficient to 5.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.857, neg=0, invalid=762 0108: dt=1.829574, rms=0.845 (1.450%), neg=0, invalid=762 0109: dt=1.536000, rms=0.841 (0.496%), neg=0, invalid=762 0110: dt=0.448000, rms=0.840 (0.069%), neg=0, invalid=762 0111: dt=0.448000, rms=0.840 (0.033%), neg=0, invalid=762 0112: dt=0.448000, rms=0.840 (-0.005%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.841, neg=0, invalid=762 0113: dt=1.024000, rms=0.839 (0.229%), neg=0, invalid=762 0114: dt=0.256000, rms=0.839 (0.006%), neg=0, invalid=762 0115: dt=0.256000, rms=0.839 (-0.000%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 10.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.754, neg=0, invalid=762 0116: dt=1.119518, rms=0.722 (4.165%), neg=0, invalid=762 0117: dt=0.112000, rms=0.720 (0.266%), neg=0, invalid=762 0118: dt=0.020000, rms=0.720 (0.006%), neg=0, invalid=762 0119: dt=0.020000, rms=0.720 (-0.005%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.722, neg=0, invalid=762 0120: dt=0.024000, rms=0.720 (0.184%), neg=0, invalid=762 0121: dt=0.000375, rms=0.720 (0.000%), neg=0, invalid=762 0122: dt=0.000375, rms=0.720 (-0.000%), neg=0, invalid=762 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.10027 (20) mri peak = 0.12832 (15) Left_Lateral_Ventricle (4): linear fit = 0.69 x + 0.0 (2299 voxels, overlap=0.414) Left_Lateral_Ventricle (4): linear fit = 0.69 x + 0.0 (2299 voxels, peak = 14), gca=13.7 gca peak = 0.15565 (16) mri peak = 0.09892 (19) Right_Lateral_Ventricle (43): linear fit = 1.22 x + 0.0 (1715 voxels, overlap=0.820) Right_Lateral_Ventricle (43): linear fit = 1.22 x + 0.0 (1715 voxels, peak = 19), gca=19.4 gca peak = 0.26829 (96) mri peak = 0.08623 (105) Right_Pallidum (52): linear fit = 1.11 x + 0.0 (839 voxels, overlap=0.041) Right_Pallidum (52): linear fit = 1.11 x + 0.0 (839 voxels, peak = 106), gca=106.1 gca peak = 0.20183 (93) mri peak = 0.09478 (98) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (818 voxels, overlap=0.980) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (818 voxels, peak = 97), gca=97.2 gca peak = 0.21683 (55) mri peak = 0.06641 (65) Right_Hippocampus (53): linear fit = 1.10 x + 0.0 (390 voxels, overlap=0.724) Right_Hippocampus (53): linear fit = 1.10 x + 0.0 (390 voxels, peak = 60), gca=60.2 gca peak = 0.30730 (58) mri peak = 0.07377 (68) Left_Hippocampus (17): linear fit = 1.16 x + 0.0 (585 voxels, overlap=0.891) Left_Hippocampus (17): linear fit = 1.16 x + 0.0 (585 voxels, peak = 68), gca=67.6 gca peak = 0.11430 (101) mri peak = 0.08117 (104) Right_Cerebral_White_Matter (41): linear fit = 1.04 x + 0.0 (45734 voxels, overlap=0.687) Right_Cerebral_White_Matter (41): linear fit = 1.04 x + 0.0 (45734 voxels, peak = 106), gca=105.5 gca peak = 0.12076 (102) mri peak = 0.07788 (107) Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (48002 voxels, overlap=0.719) Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (48002 voxels, peak = 107), gca=106.6 gca peak = 0.14995 (59) mri peak = 0.02512 (65) Left_Cerebral_Cortex (3): linear fit = 1.35 x + 0.0 (18805 voxels, overlap=0.007) Left_Cerebral_Cortex (3): linear fit = 1.35 x + 0.0 (18805 voxels, peak = 79), gca=79.4 gca peak = 0.15082 (58) mri peak = 0.02747 (80) Right_Cerebral_Cortex (42): linear fit = 1.35 x + 0.0 (17192 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 1.35 x + 0.0 (17192 voxels, peak = 78), gca=78.0 gca peak = 0.14161 (67) mri peak = 0.05052 (88) Right_Caudate (50): linear fit = 1.30 x + 0.0 (817 voxels, overlap=0.222) Right_Caudate (50): linear fit = 1.30 x + 0.0 (817 voxels, peak = 87), gca=87.4 gca peak = 0.15243 (71) mri peak = 0.10265 (78) Left_Caudate (11): linear fit = 1.05 x + 0.0 (346 voxels, overlap=0.575) Left_Caudate (11): linear fit = 1.05 x + 0.0 (346 voxels, peak = 75), gca=74.9 gca peak = 0.13336 (57) mri peak = 0.04575 (60) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (24155 voxels, overlap=0.745) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (24155 voxels, peak = 64), gca=63.6 gca peak = 0.13252 (56) mri peak = 0.04012 (63) Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (27716 voxels, overlap=0.555) Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (27716 voxels, peak = 62), gca=62.4 gca peak = 0.18181 (84) mri peak = 0.10422 (90) Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (8317 voxels, overlap=0.253) Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (8317 voxels, peak = 90), gca=90.3 gca peak = 0.20573 (83) mri peak = 0.11503 (89) Right_Cerebellum_White_Matter (46): linear fit = 1.07 x + 0.0 (7056 voxels, overlap=0.116) Right_Cerebellum_White_Matter (46): linear fit = 1.07 x + 0.0 (7056 voxels, peak = 88), gca=88.4 gca peak = 0.21969 (57) mri peak = 0.10878 (67) Left_Amygdala (18): linear fit = 1.18 x + 0.0 (400 voxels, overlap=0.028) Left_Amygdala (18): linear fit = 1.18 x + 0.0 (400 voxels, peak = 68), gca=67.5 gca peak = 0.39313 (56) mri peak = 0.07903 (60) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (445 voxels, overlap=1.000) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (445 voxels, peak = 59), gca=58.5 gca peak = 0.14181 (85) mri peak = 0.06341 (91) Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (4080 voxels, overlap=0.851) Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (4080 voxels, peak = 87), gca=87.1 gca peak = 0.11978 (83) mri peak = 0.07294 (89) Right_Thalamus_Proper (49): linear fit = 1.08 x + 0.0 (2876 voxels, overlap=0.626) Right_Thalamus_Proper (49): linear fit = 1.08 x + 0.0 (2876 voxels, peak = 89), gca=89.2 gca peak = 0.13399 (79) mri peak = 0.10689 (82) Left_Putamen (12): linear fit = 1.02 x + 0.0 (2192 voxels, overlap=0.865) Left_Putamen (12): linear fit = 1.02 x + 0.0 (2192 voxels, peak = 81), gca=81.0 gca peak = 0.14159 (79) mri peak = 0.05695 (84) Right_Putamen (51): linear fit = 1.15 x + 0.0 (2289 voxels, overlap=0.051) Right_Putamen (51): linear fit = 1.15 x + 0.0 (2289 voxels, peak = 91), gca=91.2 gca peak = 0.10025 (80) mri peak = 0.07845 (84) Brain_Stem (16): linear fit = 1.11 x + 0.0 (11281 voxels, overlap=0.402) Brain_Stem (16): linear fit = 1.11 x + 0.0 (11281 voxels, peak = 88), gca=88.4 gca peak = 0.13281 (86) mri peak = 0.10236 (101) Right_VentralDC (60): linear fit = 1.16 x + 0.0 (904 voxels, overlap=0.017) Right_VentralDC (60): linear fit = 1.16 x + 0.0 (904 voxels, peak = 100), gca=100.2 gca peak = 0.12801 (89) mri peak = 0.09473 (101) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (1118 voxels, overlap=0.028) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (1118 voxels, peak = 100), gca=100.1 gca peak = 0.20494 (23) mri peak = 0.19212 (20) Third_Ventricle (14): linear fit = 0.81 x + 0.0 (91 voxels, overlap=0.856) Third_Ventricle (14): linear fit = 0.81 x + 0.0 (91 voxels, peak = 19), gca=18.5 gca peak = 0.15061 (21) mri peak = 0.14269 (21) Fourth_Ventricle (15): linear fit = 0.98 x + 0.0 (382 voxels, overlap=0.681) Fourth_Ventricle (15): linear fit = 0.98 x + 0.0 (382 voxels, peak = 20), gca=20.5 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.18056 (32) gca peak Left_Thalamus = 0.64095 (94) gca peak CSF = 0.20999 (34) gca peak Left_Accumbens_area = 0.39030 (62) gca peak Left_undetermined = 0.95280 (25) gca peak Left_vessel = 0.67734 (53) gca peak Left_choroid_plexus = 0.09433 (44) gca peak Right_Inf_Lat_Vent = 0.23544 (26) gca peak Right_Accumbens_area = 0.30312 (64) gca peak Right_vessel = 0.46315 (51) gca peak Right_choroid_plexus = 0.14086 (44) gca peak Fifth_Ventricle = 0.51669 (36) gca peak WM_hypointensities = 0.09722 (76) gca peak non_WM_hypointensities = 0.11899 (47) gca peak Optic_Chiasm = 0.39033 (72) label assignment complete, 0 changed (0.00%) not using caudate to estimate GM means estimating mean gm scale to be 1.20 x + 0.0 estimating mean wm scale to be 1.04 x + 0.0 estimating mean csf scale to be 0.92 x + 0.0 Right_Pallidum too bright - rescaling by 0.970 (from 1.105) to 102.9 (was 106.1) saving intensity scales to talairach.label_intensities.txt **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.829, neg=0, invalid=762 0123: dt=56.229023, rms=0.820 (1.125%), neg=0, invalid=762 0124: dt=27.744000, rms=0.820 (0.054%), neg=0, invalid=762 0125: dt=23.120000, rms=0.820 (0.015%), neg=0, invalid=762 0126: dt=23.120000, rms=0.820 (0.006%), neg=0, invalid=762 0127: dt=23.120000, rms=0.820 (-0.031%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.821, neg=0, invalid=762 0128: dt=369.920000, rms=0.811 (1.215%), neg=0, invalid=762 0129: dt=129.472000, rms=0.806 (0.636%), neg=0, invalid=762 0130: dt=92.480000, rms=0.805 (0.076%), neg=0, invalid=762 0131: dt=2071.552000, rms=0.791 (1.726%), neg=0, invalid=762 0132: dt=73.984000, rms=0.789 (0.237%), neg=0, invalid=762 0133: dt=110.976000, rms=0.789 (0.056%), neg=0, invalid=762 0134: dt=517.888000, rms=0.786 (0.340%), neg=0, invalid=762 0135: dt=32.368000, rms=0.786 (0.006%), neg=0, invalid=762 0136: dt=32.368000, rms=0.786 (0.011%), neg=0, invalid=762 0137: dt=32.368000, rms=0.786 (0.015%), neg=0, invalid=762 0138: dt=32.368000, rms=0.786 (0.022%), neg=0, invalid=762 0139: dt=32.368000, rms=0.785 (0.041%), neg=0, invalid=762 0140: dt=32.368000, rms=0.785 (0.070%), neg=0, invalid=762 0141: dt=32.368000, rms=0.784 (0.095%), neg=0, invalid=762 0142: dt=32.368000, rms=0.783 (0.106%), neg=0, invalid=762 0143: dt=32.368000, rms=0.782 (0.105%), neg=0, invalid=762 0144: dt=32.368000, rms=0.782 (0.097%), neg=0, invalid=762 0145: dt=32.368000, rms=0.781 (0.088%), neg=0, invalid=762 0146: dt=32.368000, rms=0.780 (0.079%), neg=0, invalid=762 0147: dt=32.368000, rms=0.780 (0.073%), neg=0, invalid=762 0148: dt=32.368000, rms=0.779 (0.072%), neg=0, invalid=762 0149: dt=32.368000, rms=0.779 (0.079%), neg=0, invalid=762 0150: dt=32.368000, rms=0.778 (0.092%), neg=0, invalid=762 0151: dt=32.368000, rms=0.777 (0.104%), neg=0, invalid=762 0152: dt=32.368000, rms=0.776 (0.108%), neg=0, invalid=762 0153: dt=32.368000, rms=0.775 (0.107%), neg=0, invalid=762 0154: dt=32.368000, rms=0.775 (0.100%), neg=0, invalid=762 0155: dt=32.368000, rms=0.774 (0.094%), neg=0, invalid=762 0156: dt=32.368000, rms=0.773 (0.087%), neg=0, invalid=762 0157: dt=32.368000, rms=0.773 (0.081%), neg=0, invalid=762 0158: dt=32.368000, rms=0.772 (0.080%), neg=0, invalid=762 0159: dt=32.368000, rms=0.771 (0.084%), neg=0, invalid=762 0160: dt=32.368000, rms=0.771 (0.086%), neg=0, invalid=762 0161: dt=32.368000, rms=0.770 (0.085%), neg=0, invalid=762 0162: dt=32.368000, rms=0.769 (0.081%), neg=0, invalid=762 0163: dt=32.368000, rms=0.769 (0.077%), neg=0, invalid=762 0164: dt=32.368000, rms=0.768 (0.073%), neg=0, invalid=762 0165: dt=32.368000, rms=0.768 (0.069%), neg=0, invalid=762 0166: dt=32.368000, rms=0.767 (0.067%), neg=0, invalid=762 0167: dt=32.368000, rms=0.767 (0.066%), neg=0, invalid=762 0168: dt=32.368000, rms=0.766 (0.067%), neg=0, invalid=762 0169: dt=32.368000, rms=0.766 (0.068%), neg=0, invalid=762 0170: dt=32.368000, rms=0.765 (0.070%), neg=0, invalid=762 0171: dt=32.368000, rms=0.765 (0.069%), neg=0, invalid=762 0172: dt=32.368000, rms=0.764 (0.066%), neg=0, invalid=762 0173: dt=32.368000, rms=0.764 (0.063%), neg=0, invalid=762 0174: dt=32.368000, rms=0.763 (0.058%), neg=0, invalid=762 0175: dt=32.368000, rms=0.763 (0.053%), neg=0, invalid=762 0176: dt=32.368000, rms=0.762 (0.049%), neg=0, invalid=762 0177: dt=32.368000, rms=0.762 (0.048%), neg=0, invalid=762 0178: dt=32.368000, rms=0.762 (0.048%), neg=0, invalid=762 0179: dt=32.368000, rms=0.761 (0.049%), neg=0, invalid=762 0180: dt=32.368000, rms=0.761 (0.049%), neg=0, invalid=762 0181: dt=32.368000, rms=0.761 (0.049%), neg=0, invalid=762 0182: dt=32.368000, rms=0.760 (0.048%), neg=0, invalid=762 0183: dt=32.368000, rms=0.760 (0.048%), neg=0, invalid=762 0184: dt=32.368000, rms=0.760 (0.045%), neg=0, invalid=762 0185: dt=32.368000, rms=0.759 (0.043%), neg=0, invalid=762 0186: dt=32.368000, rms=0.759 (0.041%), neg=0, invalid=762 0187: dt=32.368000, rms=0.759 (0.040%), neg=0, invalid=762 0188: dt=32.368000, rms=0.758 (0.040%), neg=0, invalid=762 0189: dt=32.368000, rms=0.758 (0.039%), neg=0, invalid=762 0190: dt=32.368000, rms=0.758 (0.038%), neg=0, invalid=762 0191: dt=32.368000, rms=0.757 (0.038%), neg=0, invalid=762 0192: dt=32.368000, rms=0.757 (0.037%), neg=0, invalid=762 0193: dt=32.368000, rms=0.757 (0.035%), neg=0, invalid=762 0194: dt=32.368000, rms=0.757 (0.034%), neg=0, invalid=762 0195: dt=32.368000, rms=0.756 (0.032%), neg=0, invalid=762 0196: dt=32.368000, rms=0.756 (0.032%), neg=0, invalid=762 0197: dt=32.368000, rms=0.756 (0.032%), neg=0, invalid=762 0198: dt=32.368000, rms=0.756 (0.032%), neg=0, invalid=762 0199: dt=32.368000, rms=0.755 (0.032%), neg=0, invalid=762 0200: dt=32.368000, rms=0.755 (0.031%), neg=0, invalid=762 0201: dt=32.368000, rms=0.755 (0.030%), neg=0, invalid=762 0202: dt=32.368000, rms=0.755 (0.029%), neg=0, invalid=762 0203: dt=32.368000, rms=0.755 (0.028%), neg=0, invalid=762 0204: dt=32.368000, rms=0.754 (0.027%), neg=0, invalid=762 0205: dt=32.368000, rms=0.754 (0.027%), neg=0, invalid=762 0206: dt=32.368000, rms=0.754 (0.027%), neg=0, invalid=762 0207: dt=32.368000, rms=0.754 (0.027%), neg=0, invalid=762 0208: dt=32.368000, rms=0.753 (0.027%), neg=0, invalid=762 0209: dt=32.368000, rms=0.753 (0.027%), neg=0, invalid=762 0210: dt=32.368000, rms=0.753 (0.026%), neg=0, invalid=762 0211: dt=32.368000, rms=0.753 (0.025%), neg=0, invalid=762 0212: dt=32.368000, rms=0.753 (0.024%), neg=0, invalid=762 0213: dt=32.368000, rms=0.753 (0.024%), neg=0, invalid=762 0214: dt=8286.208000, rms=0.749 (0.469%), neg=0, invalid=762 0215: dt=295.936000, rms=0.748 (0.115%), neg=0, invalid=762 0216: dt=6.936000, rms=0.748 (-0.008%), neg=0, invalid=762 0217: dt=6.936000, rms=0.748 (0.000%), neg=0, invalid=762 0218: dt=6.936000, rms=0.748 (-0.001%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.751, neg=0, invalid=762 0219: dt=9.072000, rms=0.747 (0.454%), neg=0, invalid=762 0220: dt=2.268000, rms=0.747 (0.049%), neg=0, invalid=762 0221: dt=2.268000, rms=0.747 (0.048%), neg=0, invalid=762 0222: dt=0.567000, rms=0.747 (0.012%), neg=0, invalid=762 0223: dt=0.283500, rms=0.747 (0.006%), neg=0, invalid=762 0224: dt=0.035437, rms=0.746 (0.001%), neg=0, invalid=762 0225: dt=0.017719, rms=0.746 (0.000%), neg=0, invalid=762 0226: dt=0.008859, rms=0.746 (0.000%), neg=0, invalid=762 0227: dt=0.002215, rms=0.746 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.748, neg=0, invalid=762 0228: dt=0.000000, rms=0.746 (0.256%), neg=0, invalid=762 0229: dt=0.000000, rms=0.746 (0.000%), neg=0, invalid=762 0230: dt=0.000220, rms=0.746 (0.000%), neg=0, invalid=762 0231: dt=0.000003, rms=0.746 (0.000%), neg=0, invalid=762 0232: dt=0.000001, rms=0.746 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.751, neg=0, invalid=762 0233: dt=0.000000, rms=0.749 (0.254%), neg=0, invalid=762 0234: dt=0.000000, rms=0.749 (0.000%), neg=0, invalid=762 0235: dt=0.000000, rms=0.749 (0.000%), neg=0, invalid=762 0236: dt=0.000000, rms=0.749 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.751, neg=0, invalid=762 0237: dt=0.000000, rms=0.749 (0.254%), neg=0, invalid=762 0238: dt=0.000000, rms=0.749 (0.000%), neg=0, invalid=762 0239: dt=0.000015, rms=0.749 (0.000%), neg=0, invalid=762 0240: dt=0.000004, rms=0.749 (0.000%), neg=0, invalid=762 0241: dt=0.000001, rms=0.749 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.759, neg=0, invalid=762 0242: dt=2.880000, rms=0.728 (4.181%), neg=0, invalid=762 0243: dt=0.720000, rms=0.721 (0.849%), neg=0, invalid=762 0244: dt=0.063000, rms=0.721 (0.073%), neg=0, invalid=762 0245: dt=0.054000, rms=0.721 (0.060%), neg=0, invalid=762 0246: dt=0.003938, rms=0.720 (0.005%), neg=0, invalid=762 0247: dt=0.000492, rms=0.720 (0.001%), neg=0, invalid=762 0248: dt=0.000246, rms=0.720 (0.000%), neg=0, invalid=762 0249: dt=0.000062, rms=0.720 (0.000%), neg=0, invalid=762 0250: dt=0.000000, rms=0.720 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.722, neg=0, invalid=762 0251: dt=0.000000, rms=0.720 (0.244%), neg=0, invalid=762 0252: dt=0.000000, rms=0.720 (0.000%), neg=0, invalid=762 0253: dt=0.000073, rms=0.720 (0.000%), neg=0, invalid=762 0254: dt=0.000018, rms=0.720 (0.000%), neg=0, invalid=762 0255: dt=0.000001, rms=0.720 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.741, neg=0, invalid=762 0256: dt=1.792000, rms=0.714 (3.738%), neg=0, invalid=762 0257: dt=1.792000, rms=0.699 (2.091%), neg=0, invalid=762 0258: dt=1.792000, rms=0.690 (1.236%), neg=0, invalid=762 0259: dt=1.792000, rms=0.685 (0.776%), neg=0, invalid=762 0260: dt=0.448000, rms=0.684 (0.136%), neg=0, invalid=762 0261: dt=1.792000, rms=0.680 (0.498%), neg=0, invalid=762 0262: dt=0.448000, rms=0.680 (0.092%), neg=0, invalid=762 0263: dt=1.536000, rms=0.678 (0.297%), neg=0, invalid=762 0264: dt=1.280000, rms=0.676 (0.203%), neg=0, invalid=762 0265: dt=0.448000, rms=0.676 (0.060%), neg=0, invalid=762 0266: dt=1.792000, rms=0.674 (0.230%), neg=0, invalid=762 0267: dt=1.280000, rms=0.673 (0.134%), neg=0, invalid=762 0268: dt=1.280000, rms=0.673 (0.120%), neg=0, invalid=762 0269: dt=1.280000, rms=0.672 (0.106%), neg=0, invalid=762 0270: dt=0.448000, rms=0.672 (0.035%), neg=0, invalid=762 0271: dt=0.448000, rms=0.671 (0.033%), neg=0, invalid=762 0272: dt=0.448000, rms=0.671 (0.061%), neg=0, invalid=762 0273: dt=0.448000, rms=0.670 (0.083%), neg=0, invalid=762 0274: dt=0.448000, rms=0.670 (0.101%), neg=0, invalid=762 0275: dt=0.448000, rms=0.669 (0.113%), neg=0, invalid=762 0276: dt=0.448000, rms=0.668 (0.119%), neg=0, invalid=762 0277: dt=0.448000, rms=0.667 (0.118%), neg=0, invalid=762 0278: dt=0.448000, rms=0.667 (0.115%), neg=0, invalid=762 0279: dt=0.448000, rms=0.666 (0.110%), neg=0, invalid=762 0280: dt=0.448000, rms=0.665 (0.099%), neg=0, invalid=762 0281: dt=0.448000, rms=0.665 (0.089%), neg=0, invalid=762 0282: dt=0.448000, rms=0.664 (0.074%), neg=0, invalid=762 0283: dt=0.448000, rms=0.664 (0.061%), neg=0, invalid=762 0284: dt=0.448000, rms=0.663 (0.047%), neg=0, invalid=762 0285: dt=0.448000, rms=0.663 (0.035%), neg=0, invalid=762 0286: dt=0.448000, rms=0.663 (0.024%), neg=0, invalid=762 0287: dt=0.448000, rms=0.663 (0.016%), neg=0, invalid=762 0288: dt=0.000000, rms=0.663 (0.001%), neg=0, invalid=762 0289: dt=0.100000, rms=0.663 (-0.001%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.664, neg=0, invalid=762 0290: dt=1.792000, rms=0.662 (0.381%), neg=0, invalid=762 0291: dt=1.536000, rms=0.661 (0.033%), neg=0, invalid=762 0292: dt=0.768000, rms=0.661 (0.000%), neg=0, invalid=762 0293: dt=0.768000, rms=0.661 (-0.003%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.639, neg=0, invalid=762 0294: dt=0.112000, rms=0.632 (1.078%), neg=0, invalid=762 0295: dt=0.112000, rms=0.627 (0.803%), neg=0, invalid=762 0296: dt=0.112000, rms=0.623 (0.707%), neg=0, invalid=762 0297: dt=0.112000, rms=0.619 (0.617%), neg=0, invalid=762 0298: dt=0.112000, rms=0.616 (0.538%), neg=0, invalid=762 0299: dt=0.112000, rms=0.613 (0.470%), neg=0, invalid=762 0300: dt=0.112000, rms=0.610 (0.412%), neg=0, invalid=762 0301: dt=0.112000, rms=0.608 (0.363%), neg=0, invalid=762 0302: dt=0.112000, rms=0.606 (0.323%), neg=0, invalid=762 0303: dt=0.112000, rms=0.604 (0.286%), neg=0, invalid=762 0304: dt=0.112000, rms=0.603 (0.257%), neg=0, invalid=762 0305: dt=0.112000, rms=0.601 (0.231%), neg=0, invalid=762 0306: dt=0.112000, rms=0.600 (0.209%), neg=0, invalid=762 0307: dt=0.218750, rms=0.598 (0.371%), neg=0, invalid=762 0308: dt=0.175000, rms=0.597 (0.246%), neg=0, invalid=762 0309: dt=0.112000, rms=0.596 (0.139%), neg=0, invalid=762 0310: dt=0.112000, rms=0.595 (0.130%), neg=0, invalid=762 0311: dt=0.112000, rms=0.594 (0.121%), neg=0, invalid=762 0312: dt=0.112000, rms=0.594 (0.113%), neg=0, invalid=762 0313: dt=0.112000, rms=0.593 (0.105%), neg=0, invalid=762 0314: dt=0.112000, rms=0.592 (0.099%), neg=0, invalid=762 0315: dt=0.112000, rms=0.592 (0.092%), neg=0, invalid=762 0316: dt=0.112000, rms=0.591 (0.087%), neg=0, invalid=762 0317: dt=0.112000, rms=0.591 (0.083%), neg=0, invalid=762 0318: dt=0.112000, rms=0.590 (0.078%), neg=0, invalid=762 0319: dt=0.112000, rms=0.590 (0.073%), neg=0, invalid=762 0320: dt=0.112000, rms=0.589 (0.070%), neg=0, invalid=762 0321: dt=0.112000, rms=0.589 (0.066%), neg=0, invalid=762 0322: dt=0.112000, rms=0.589 (0.062%), neg=0, invalid=762 0323: dt=0.112000, rms=0.588 (0.062%), neg=0, invalid=762 0324: dt=0.112000, rms=0.588 (0.056%), neg=0, invalid=762 0325: dt=0.112000, rms=0.588 (0.054%), neg=0, invalid=762 0326: dt=0.112000, rms=0.587 (0.053%), neg=0, invalid=762 0327: dt=0.112000, rms=0.587 (0.049%), neg=0, invalid=762 0328: dt=0.112000, rms=0.587 (0.048%), neg=0, invalid=762 0329: dt=0.112000, rms=0.586 (0.089%), neg=0, invalid=762 0330: dt=0.112000, rms=0.586 (0.120%), neg=0, invalid=762 0331: dt=0.112000, rms=0.585 (0.144%), neg=0, invalid=762 0332: dt=0.112000, rms=0.584 (0.159%), neg=0, invalid=762 0333: dt=0.112000, rms=0.583 (0.169%), neg=0, invalid=762 0334: dt=0.112000, rms=0.582 (0.167%), neg=0, invalid=762 0335: dt=0.112000, rms=0.581 (0.162%), neg=0, invalid=762 0336: dt=0.112000, rms=0.580 (0.150%), neg=0, invalid=762 0337: dt=0.112000, rms=0.579 (0.136%), neg=0, invalid=762 0338: dt=0.112000, rms=0.579 (0.121%), neg=0, invalid=762 0339: dt=0.112000, rms=0.578 (0.105%), neg=0, invalid=762 0340: dt=0.112000, rms=0.577 (0.086%), neg=0, invalid=762 0341: dt=0.112000, rms=0.577 (0.071%), neg=0, invalid=762 0342: dt=0.112000, rms=0.577 (0.056%), neg=0, invalid=762 0343: dt=0.112000, rms=0.576 (0.041%), neg=0, invalid=762 0344: dt=0.112000, rms=0.576 (0.030%), neg=0, invalid=762 0345: dt=0.112000, rms=0.576 (0.021%), neg=0, invalid=762 0346: dt=0.112000, rms=0.576 (0.014%), neg=0, invalid=762 0347: dt=0.000000, rms=0.576 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.577, neg=0, invalid=762 0348: dt=0.214286, rms=0.574 (0.550%), neg=0, invalid=762 0349: dt=0.112000, rms=0.573 (0.108%), neg=0, invalid=762 0350: dt=0.112000, rms=0.573 (0.080%), neg=0, invalid=762 0351: dt=0.112000, rms=0.573 (0.058%), neg=0, invalid=762 0352: dt=0.112000, rms=0.572 (0.040%), neg=0, invalid=762 0353: dt=0.112000, rms=0.572 (0.028%), neg=0, invalid=762 0354: dt=0.112000, rms=0.572 (0.043%), neg=0, invalid=762 0355: dt=0.112000, rms=0.572 (0.039%), neg=0, invalid=762 0356: dt=0.112000, rms=0.572 (0.016%), neg=0, invalid=762 0357: dt=0.112000, rms=0.572 (-0.023%), neg=0, invalid=762 0358: dt=0.000000, rms=0.572 (0.000%), neg=0, invalid=762 label assignment complete, 0 changed (0.00%) ********************* ALLOWING NEGATIVE NODES IN DEFORMATION******************************** **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.568, neg=0, invalid=762 0359: dt=5.780000, rms=0.567 (0.183%), neg=0, invalid=762 0360: dt=0.867000, rms=0.567 (-0.001%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.568, neg=0, invalid=762 0361: dt=73.984000, rms=0.567 (0.197%), neg=0, invalid=762 0362: dt=295.936000, rms=0.567 (0.068%), neg=0, invalid=762 0363: dt=295.936000, rms=0.567 (-1.228%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.568, neg=0, invalid=762 0364: dt=74.666667, rms=0.564 (0.648%), neg=0, invalid=762 0365: dt=72.237624, rms=0.562 (0.445%), neg=0, invalid=762 0366: dt=31.104000, rms=0.561 (0.143%), neg=0, invalid=762 0367: dt=31.104000, rms=0.560 (0.112%), neg=0, invalid=762 0368: dt=31.104000, rms=0.559 (0.159%), neg=0, invalid=762 0369: dt=31.104000, rms=0.558 (0.174%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 3 iterations, nbhd size=0, neg = 0 0370: dt=31.104000, rms=0.557 (0.167%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0371: dt=31.104000, rms=0.556 (0.158%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 6 iterations, nbhd size=0, neg = 0 0372: dt=31.104000, rms=0.556 (0.131%), neg=0, invalid=762 0373: dt=31.104000, rms=0.555 (0.115%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 10 iterations, nbhd size=1, neg = 0 0374: dt=31.104000, rms=0.555 (0.016%), neg=0, invalid=762 iter 0, gcam->neg = 4 after 6 iterations, nbhd size=1, neg = 0 0375: dt=331.776000, rms=0.554 (0.239%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0376: dt=36.288000, rms=0.553 (0.193%), neg=0, invalid=762 0377: dt=36.288000, rms=0.553 (0.021%), neg=0, invalid=762 0378: dt=36.288000, rms=0.552 (0.038%), neg=0, invalid=762 0379: dt=36.288000, rms=0.552 (0.059%), neg=0, invalid=762 0380: dt=36.288000, rms=0.552 (0.068%), neg=0, invalid=762 0381: dt=36.288000, rms=0.551 (0.070%), neg=0, invalid=762 0382: dt=36.288000, rms=0.551 (0.071%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 9 iterations, nbhd size=1, neg = 0 0383: dt=36.288000, rms=0.550 (0.064%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 4 iterations, nbhd size=0, neg = 0 0384: dt=36.288000, rms=0.550 (0.089%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0385: dt=36.288000, rms=0.550 (0.085%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.551, neg=0, invalid=762 0386: dt=36.288000, rms=0.549 (0.456%), neg=0, invalid=762 0387: dt=103.680000, rms=0.547 (0.278%), neg=0, invalid=762 0388: dt=31.104000, rms=0.547 (0.032%), neg=0, invalid=762 0389: dt=31.104000, rms=0.546 (0.079%), neg=0, invalid=762 0390: dt=31.104000, rms=0.546 (0.095%), neg=0, invalid=762 0391: dt=31.104000, rms=0.545 (0.090%), neg=0, invalid=762 0392: dt=31.104000, rms=0.545 (0.072%), neg=0, invalid=762 0393: dt=145.152000, rms=0.544 (0.092%), neg=0, invalid=762 0394: dt=9.072000, rms=0.544 (0.002%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.547, neg=0, invalid=762 iter 0, gcam->neg = 83 after 17 iterations, nbhd size=1, neg = 0 0395: dt=61.205634, rms=0.537 (1.931%), neg=0, invalid=762 iter 0, gcam->neg = 14 after 2 iterations, nbhd size=0, neg = 0 0396: dt=23.327478, rms=0.533 (0.694%), neg=0, invalid=762 iter 0, gcam->neg = 152 after 18 iterations, nbhd size=1, neg = 0 0397: dt=53.784038, rms=0.529 (0.788%), neg=0, invalid=762 iter 0, gcam->neg = 23 after 10 iterations, nbhd size=0, neg = 0 0398: dt=22.662513, rms=0.526 (0.567%), neg=0, invalid=762 iter 0, gcam->neg = 263 after 23 iterations, nbhd size=1, neg = 0 0399: dt=92.268936, rms=0.522 (0.691%), neg=0, invalid=762 iter 0, gcam->neg = 10 after 2 iterations, nbhd size=0, neg = 0 0400: dt=11.200000, rms=0.521 (0.284%), neg=0, invalid=762 iter 0, gcam->neg = 21 after 22 iterations, nbhd size=1, neg = 0 0401: dt=32.000000, rms=0.520 (0.165%), neg=0, invalid=762 iter 0, gcam->neg = 24 after 24 iterations, nbhd size=1, neg = 0 0402: dt=32.000000, rms=0.518 (0.285%), neg=0, invalid=762 iter 0, gcam->neg = 78 after 21 iterations, nbhd size=1, neg = 0 0403: dt=32.000000, rms=0.517 (0.300%), neg=0, invalid=762 iter 0, gcam->neg = 163 after 21 iterations, nbhd size=1, neg = 0 0404: dt=32.000000, rms=0.516 (0.101%), neg=0, invalid=762 iter 0, gcam->neg = 248 after 26 iterations, nbhd size=1, neg = 0 0405: dt=32.000000, rms=0.516 (0.053%), neg=0, invalid=762 iter 0, gcam->neg = 143 after 21 iterations, nbhd size=1, neg = 0 0406: dt=38.400000, rms=0.515 (0.298%), neg=0, invalid=762 iter 0, gcam->neg = 13 after 24 iterations, nbhd size=2, neg = 0 0407: dt=11.200000, rms=0.514 (0.073%), neg=0, invalid=762 iter 0, gcam->neg = 15 after 19 iterations, nbhd size=2, neg = 0 0408: dt=11.200000, rms=0.514 (0.014%), neg=0, invalid=762 iter 0, gcam->neg = 31 after 5 iterations, nbhd size=0, neg = 0 0409: dt=11.200000, rms=0.513 (0.257%), neg=0, invalid=762 iter 0, gcam->neg = 61 after 23 iterations, nbhd size=1, neg = 0 0410: dt=11.200000, rms=0.512 (0.158%), neg=0, invalid=762 iter 0, gcam->neg = 30 after 19 iterations, nbhd size=1, neg = 0 0411: dt=11.200000, rms=0.511 (0.148%), neg=0, invalid=762 iter 0, gcam->neg = 43 after 15 iterations, nbhd size=1, neg = 0 0412: dt=11.200000, rms=0.511 (0.107%), neg=0, invalid=762 iter 0, gcam->neg = 40 after 12 iterations, nbhd size=1, neg = 0 0413: dt=11.200000, rms=0.510 (0.084%), neg=0, invalid=762 iter 0, gcam->neg = 4 after 24 iterations, nbhd size=2, neg = 0 0414: dt=9.600000, rms=0.510 (-0.085%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.512, neg=0, invalid=762 iter 0, gcam->neg = 4 after 18 iterations, nbhd size=2, neg = 0 0415: dt=11.200000, rms=0.510 (0.318%), neg=0, invalid=762 iter 0, gcam->neg = 8 after 4 iterations, nbhd size=0, neg = 0 0416: dt=25.600000, rms=0.509 (0.126%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 2 iterations, nbhd size=0, neg = 0 0417: dt=25.600000, rms=0.509 (0.178%), neg=0, invalid=762 iter 0, gcam->neg = 6 after 6 iterations, nbhd size=0, neg = 0 0418: dt=25.600000, rms=0.508 (0.168%), neg=0, invalid=762 iter 0, gcam->neg = 17 after 17 iterations, nbhd size=1, neg = 0 0419: dt=25.600000, rms=0.508 (0.037%), neg=0, invalid=762 iter 0, gcam->neg = 30 after 15 iterations, nbhd size=1, neg = 0 0420: dt=25.600000, rms=0.508 (0.001%), neg=0, invalid=762 iter 0, gcam->neg = 63 after 13 iterations, nbhd size=1, neg = 0 0421: dt=90.175589, rms=0.506 (0.357%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 5 iterations, nbhd size=0, neg = 0 0422: dt=11.200000, rms=0.505 (0.044%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 8 iterations, nbhd size=1, neg = 0 0423: dt=11.200000, rms=0.505 (0.021%), neg=0, invalid=762 iter 0, gcam->neg = 4 after 10 iterations, nbhd size=1, neg = 0 0424: dt=11.200000, rms=0.505 (-0.004%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.516, neg=0, invalid=762 0425: dt=1.008000, rms=0.514 (0.315%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 0426: dt=1.008000, rms=0.514 (0.005%), neg=0, invalid=762 0427: dt=1.008000, rms=0.514 (0.004%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 6 iterations, nbhd size=1, neg = 0 0428: dt=1.008000, rms=0.514 (-0.004%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.516, neg=0, invalid=762 0429: dt=0.000000, rms=0.514 (0.301%), neg=0, invalid=762 0430: dt=0.000000, rms=0.514 (0.000%), neg=0, invalid=762 0431: dt=0.150000, rms=0.514 (-0.003%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.533, neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0432: dt=0.448000, rms=0.532 (0.312%), neg=0, invalid=762 0433: dt=0.112000, rms=0.532 (0.002%), neg=0, invalid=762 0434: dt=0.112000, rms=0.532 (0.002%), neg=0, invalid=762 0435: dt=0.112000, rms=0.532 (-0.003%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.533, neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0436: dt=0.448000, rms=0.531 (0.336%), neg=0, invalid=762 0437: dt=0.448000, rms=0.531 (0.026%), neg=0, invalid=762 0438: dt=0.448000, rms=0.531 (0.000%), neg=0, invalid=762 0439: dt=0.448000, rms=0.531 (-0.069%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.511, neg=0, invalid=762 iter 0, gcam->neg = 3091 after 17 iterations, nbhd size=1, neg = 0 0440: dt=1.911907, rms=0.475 (7.151%), neg=0, invalid=762 0441: dt=0.000013, rms=0.475 (0.007%), neg=0, invalid=762 0442: dt=0.000013, rms=0.475 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.477, neg=0, invalid=762 0443: dt=0.028000, rms=0.475 (0.404%), neg=0, invalid=762 0444: dt=0.007000, rms=0.475 (0.003%), neg=0, invalid=762 0445: dt=0.007000, rms=0.475 (0.000%), neg=0, invalid=762 0446: dt=0.007000, rms=0.475 (-0.002%), neg=0, invalid=762 label assignment complete, 0 changed (0.00%) label assignment complete, 0 changed (0.00%) ***************** morphing with label term set to 0 ******************************* **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.461, neg=0, invalid=762 0447: dt=18.496000, rms=0.461 (0.007%), neg=0, invalid=762 0448: dt=2.023000, rms=0.461 (0.000%), neg=0, invalid=762 0449: dt=2.023000, rms=0.461 (0.000%), neg=0, invalid=762 0450: dt=2.023000, rms=0.461 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.461, neg=0, invalid=762 0451: dt=73.984000, rms=0.461 (0.006%), neg=0, invalid=762 0452: dt=221.952000, rms=0.461 (0.013%), neg=0, invalid=762 0453: dt=27.744000, rms=0.461 (0.000%), neg=0, invalid=762 0454: dt=27.744000, rms=0.461 (0.000%), neg=0, invalid=762 0455: dt=27.744000, rms=0.461 (0.001%), neg=0, invalid=762 0456: dt=27.744000, rms=0.461 (0.001%), neg=0, invalid=762 0457: dt=27.744000, rms=0.461 (0.002%), neg=0, invalid=762 0458: dt=27.744000, rms=0.461 (0.002%), neg=0, invalid=762 0459: dt=27.744000, rms=0.461 (0.002%), neg=0, invalid=762 0460: dt=27.744000, rms=0.461 (0.002%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.461, neg=0, invalid=762 0461: dt=36.288000, rms=0.461 (0.113%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0462: dt=36.288000, rms=0.461 (0.022%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 7 iterations, nbhd size=1, neg = 0 0463: dt=36.288000, rms=0.461 (-0.009%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.461, neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0464: dt=36.288000, rms=0.460 (0.089%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0465: dt=82.944000, rms=0.460 (0.041%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 8 iterations, nbhd size=1, neg = 0 0466: dt=82.944000, rms=0.460 (0.053%), neg=0, invalid=762 iter 0, gcam->neg = 8 after 9 iterations, nbhd size=1, neg = 0 0467: dt=82.944000, rms=0.460 (0.067%), neg=0, invalid=762 iter 0, gcam->neg = 9 after 1 iterations, nbhd size=0, neg = 0 0468: dt=82.944000, rms=0.459 (0.067%), neg=0, invalid=762 iter 0, gcam->neg = 12 after 9 iterations, nbhd size=1, neg = 0 0469: dt=82.944000, rms=0.459 (0.040%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.460, neg=0, invalid=762 iter 0, gcam->neg = 214 after 24 iterations, nbhd size=1, neg = 0 0470: dt=43.550296, rms=0.456 (0.745%), neg=0, invalid=762 iter 0, gcam->neg = 105 after 17 iterations, nbhd size=1, neg = 0 0471: dt=32.000000, rms=0.456 (0.186%), neg=0, invalid=762 iter 0, gcam->neg = 99 after 20 iterations, nbhd size=1, neg = 0 0472: dt=32.000000, rms=0.455 (0.092%), neg=0, invalid=762 iter 0, gcam->neg = 271 after 37 iterations, nbhd size=1, neg = 0 0473: dt=32.000000, rms=0.455 (-0.241%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.455, neg=0, invalid=762 iter 0, gcam->neg = 39 after 17 iterations, nbhd size=1, neg = 0 0474: dt=25.328622, rms=0.454 (0.236%), neg=0, invalid=762 iter 0, gcam->neg = 25 after 6 iterations, nbhd size=0, neg = 0 0475: dt=44.800000, rms=0.453 (0.321%), neg=0, invalid=762 iter 0, gcam->neg = 33 after 21 iterations, nbhd size=1, neg = 0 0476: dt=38.400000, rms=0.453 (-0.002%), neg=0, invalid=762 iter 0, gcam->neg = 33 after 21 iterations, nbhd size=1, neg = 0 0477: dt=38.400000, rms=0.453 (-0.002%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.456, neg=0, invalid=762 iter 0, gcam->neg = 627 after 31 iterations, nbhd size=1, neg = 0 0478: dt=20.206897, rms=0.456 (0.059%), neg=0, invalid=762 iter 0, gcam->neg = 555 after 24 iterations, nbhd size=1, neg = 0 0479: dt=13.294964, rms=0.453 (0.587%), neg=0, invalid=762 iter 0, gcam->neg = 192 after 23 iterations, nbhd size=1, neg = 0 0480: dt=9.704918, rms=0.452 (0.305%), neg=0, invalid=762 iter 0, gcam->neg = 184 after 24 iterations, nbhd size=1, neg = 0 0481: dt=9.572254, rms=0.451 (0.133%), neg=0, invalid=762 iter 0, gcam->neg = 193 after 27 iterations, nbhd size=2, neg = 0 0482: dt=9.572254, rms=0.451 (-0.192%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.451, neg=0, invalid=762 iter 0, gcam->neg = 137 after 33 iterations, nbhd size=2, neg = 0 0483: dt=8.908108, rms=0.451 (-0.287%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.460, neg=0, invalid=762 0484: dt=0.000050, rms=0.460 (0.000%), neg=0, invalid=762 0485: dt=0.000000, rms=0.460 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.460, neg=0, invalid=762 0486: dt=0.000000, rms=0.460 (0.000%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.445, neg=0, invalid=762 iter 0, gcam->neg = 1462 after 22 iterations, nbhd size=1, neg = 0 0487: dt=0.662544, rms=0.439 (1.355%), neg=0, invalid=762 iter 0, gcam->neg = 19 after 3 iterations, nbhd size=0, neg = 0 0488: dt=0.256000, rms=0.438 (0.217%), neg=0, invalid=762 iter 0, gcam->neg = 11 after 0 iterations, nbhd size=0, neg = 0 0489: dt=0.256000, rms=0.437 (0.258%), neg=0, invalid=762 iter 0, gcam->neg = 83 after 10 iterations, nbhd size=1, neg = 0 0490: dt=0.256000, rms=0.436 (0.122%), neg=0, invalid=762 iter 0, gcam->neg = 110 after 12 iterations, nbhd size=1, neg = 0 0491: dt=0.256000, rms=0.435 (0.189%), neg=0, invalid=762 iter 0, gcam->neg = 157 after 17 iterations, nbhd size=1, neg = 0 0492: dt=0.256000, rms=0.435 (0.170%), neg=0, invalid=762 iter 0, gcam->neg = 181 after 13 iterations, nbhd size=1, neg = 0 0493: dt=0.256000, rms=0.434 (0.118%), neg=0, invalid=762 iter 0, gcam->neg = 214 after 22 iterations, nbhd size=1, neg = 0 0494: dt=0.256000, rms=0.434 (-0.098%), neg=0, invalid=762 iter 0, gcam->neg = 17 after 6 iterations, nbhd size=0, neg = 0 0495: dt=0.256000, rms=0.434 (0.141%), neg=0, invalid=762 0496: dt=0.112000, rms=0.433 (0.052%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.433, neg=0, invalid=762 iter 0, gcam->neg = 529 after 15 iterations, nbhd size=1, neg = 0 0497: dt=0.616000, rms=0.431 (0.586%), neg=0, invalid=762 0498: dt=0.096000, rms=0.431 (0.031%), neg=0, invalid=762 0499: dt=0.096000, rms=0.431 (0.019%), neg=0, invalid=762 0500: dt=0.096000, rms=0.431 (0.017%), neg=0, invalid=762 0501: dt=0.096000, rms=0.430 (0.027%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0502: dt=0.096000, rms=0.430 (0.052%), neg=0, invalid=762 0503: dt=0.096000, rms=0.430 (0.081%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 1 iterations, nbhd size=0, neg = 0 0504: dt=0.096000, rms=0.429 (0.098%), neg=0, invalid=762 iter 0, gcam->neg = 4 after 0 iterations, nbhd size=0, neg = 0 0505: dt=0.096000, rms=0.429 (0.105%), neg=0, invalid=762 iter 0, gcam->neg = 11 after 12 iterations, nbhd size=1, neg = 0 0506: dt=0.096000, rms=0.429 (0.051%), neg=0, invalid=762 0507: dt=0.112000, rms=0.429 (0.032%), neg=0, invalid=762 writing output transformation to transforms/talairach.m3z... GCAMwrite mri_ca_register took 2 hours, 51 minutes and 27 seconds. mri_ca_register utimesec 10273.979117 mri_ca_register stimesec 14.003871 mri_ca_register ru_maxrss 1333336 mri_ca_register ru_ixrss 0 mri_ca_register ru_idrss 0 mri_ca_register ru_isrss 0 mri_ca_register ru_minflt 6361023 mri_ca_register ru_majflt 9 mri_ca_register ru_nswap 0 mri_ca_register ru_inblock 4280 mri_ca_register ru_oublock 64992 mri_ca_register ru_msgsnd 0 mri_ca_register ru_msgrcv 0 mri_ca_register ru_nsignals 0 mri_ca_register ru_nvcsw 225 mri_ca_register ru_nivcsw 20251 FSRUNTIME@ mri_ca_register 2.8574 hours 1 threads #-------------------------------------- #@# SubCort Seg Tue Jul 17 18:00:24 CDT 2018 mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz sysname Linux hostname hhvrixnatp01 machine x86_64 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz == Number of threads available to mri_ca_label for OpenMP = 1 == relabeling unlikely voxels with window_size = 9 and prior threshold 0.30 using Gibbs prior factor = 0.500 renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 reading 1 input volumes reading classifier array from /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca reading input volume from norm.mgz average std[0] = 7.3 reading transform from transforms/talairach.m3z setting orig areas to linear transform determinant scaled 6.23 Atlas used for the 3D morph was /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca average std = 7.3 using min determinant for regularization = 5.3 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.16259 (20) mri peak = 0.09959 (14) Left_Lateral_Ventricle (4): linear fit = 0.70 x + 0.0 (9450 voxels, overlap=0.391) Left_Lateral_Ventricle (4): linear fit = 0.70 x + 0.0 (9450 voxels, peak = 14), gca=14.1 gca peak = 0.17677 (13) mri peak = 0.09783 (15) Right_Lateral_Ventricle (43): linear fit = 1.03 x + 0.0 (11452 voxels, overlap=0.810) Right_Lateral_Ventricle (43): linear fit = 1.03 x + 0.0 (11452 voxels, peak = 13), gca=13.5 gca peak = 0.28129 (95) mri peak = 0.13616 (104) Right_Pallidum (52): linear fit = 1.09 x + 0.0 (336 voxels, overlap=0.464) Right_Pallidum (52): linear fit = 1.09 x + 0.0 (336 voxels, peak = 103), gca=103.1 gca peak = 0.16930 (96) mri peak = 0.09699 (100) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (600 voxels, overlap=0.875) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (600 voxels, peak = 100), gca=100.3 gca peak = 0.24553 (55) mri peak = 0.10405 (71) Right_Hippocampus (53): linear fit = 1.23 x + 0.0 (432 voxels, overlap=0.204) Right_Hippocampus (53): linear fit = 1.23 x + 0.0 (432 voxels, peak = 67), gca=67.4 gca peak = 0.30264 (59) mri peak = 0.07725 (68) Left_Hippocampus (17): linear fit = 1.13 x + 0.0 (810 voxels, overlap=1.016) Left_Hippocampus (17): linear fit = 1.13 x + 0.0 (810 voxels, peak = 67), gca=67.0 gca peak = 0.07580 (103) mri peak = 0.10503 (104) Right_Cerebral_White_Matter (41): linear fit = 1.01 x + 0.0 (12041 voxels, overlap=0.643) Right_Cerebral_White_Matter (41): linear fit = 1.01 x + 0.0 (12041 voxels, peak = 105), gca=104.5 gca peak = 0.07714 (104) mri peak = 0.09291 (107) Left_Cerebral_White_Matter (2): linear fit = 1.01 x + 0.0 (15437 voxels, overlap=0.612) Left_Cerebral_White_Matter (2): linear fit = 1.01 x + 0.0 (15437 voxels, peak = 106), gca=105.6 gca peak = 0.09712 (58) mri peak = 0.03399 (80) Left_Cerebral_Cortex (3): linear fit = 1.35 x + 0.0 (16596 voxels, overlap=0.006) Left_Cerebral_Cortex (3): linear fit = 1.35 x + 0.0 (16596 voxels, peak = 78), gca=78.0 gca peak = 0.11620 (58) mri peak = 0.03790 (80) Right_Cerebral_Cortex (42): linear fit = 1.35 x + 0.0 (13950 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 1.35 x + 0.0 (13950 voxels, peak = 78), gca=78.0 gca peak = 0.30970 (66) mri peak = 0.07959 (84) Right_Caudate (50): linear fit = 1.26 x + 0.0 (711 voxels, overlap=0.021) Right_Caudate (50): linear fit = 1.26 x + 0.0 (711 voxels, peak = 83), gca=83.5 gca peak = 0.15280 (69) mri peak = 0.11392 (79) Left_Caudate (11): linear fit = 1.09 x + 0.0 (664 voxels, overlap=0.652) Left_Caudate (11): linear fit = 1.09 x + 0.0 (664 voxels, peak = 75), gca=74.9 gca peak = 0.13902 (56) mri peak = 0.06366 (63) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (24847 voxels, overlap=0.797) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (24847 voxels, peak = 62), gca=62.4 gca peak = 0.14777 (55) mri peak = 0.06334 (63) Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (25923 voxels, overlap=0.721) Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (25923 voxels, peak = 62), gca=61.9 gca peak = 0.16765 (84) mri peak = 0.17187 (90) Left_Cerebellum_White_Matter (7): linear fit = 1.07 x + 0.0 (4905 voxels, overlap=0.404) Left_Cerebellum_White_Matter (7): linear fit = 1.07 x + 0.0 (4905 voxels, peak = 89), gca=89.5 gca peak = 0.18739 (84) mri peak = 0.21318 (89) Right_Cerebellum_White_Matter (46): linear fit = 1.07 x + 0.0 (5515 voxels, overlap=0.138) Right_Cerebellum_White_Matter (46): linear fit = 1.07 x + 0.0 (5515 voxels, peak = 89), gca=89.5 gca peak = 0.29869 (57) mri peak = 0.11628 (69) Left_Amygdala (18): linear fit = 1.16 x + 0.0 (172 voxels, overlap=0.053) Left_Amygdala (18): linear fit = 1.16 x + 0.0 (172 voxels, peak = 66), gca=66.4 gca peak = 0.33601 (57) mri peak = 0.09109 (50) gca peak = 0.11131 (90) mri peak = 0.07761 (91) Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (3080 voxels, overlap=0.833) Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (3080 voxels, peak = 92), gca=92.2 gca peak = 0.11793 (83) mri peak = 0.09014 (91) Right_Thalamus_Proper (49): linear fit = 1.11 x + 0.0 (2534 voxels, overlap=0.497) Right_Thalamus_Proper (49): linear fit = 1.11 x + 0.0 (2534 voxels, peak = 92), gca=91.7 gca peak = 0.08324 (81) mri peak = 0.14308 (82) Left_Putamen (12): linear fit = 1.01 x + 0.0 (636 voxels, overlap=0.689) Left_Putamen (12): linear fit = 1.01 x + 0.0 (636 voxels, peak = 82), gca=82.2 gca peak = 0.10360 (77) mri peak = 0.13953 (90) Right_Putamen (51): linear fit = 1.15 x + 0.0 (194 voxels, overlap=0.067) Right_Putamen (51): linear fit = 1.15 x + 0.0 (194 voxels, peak = 89), gca=88.9 gca peak = 0.08424 (78) mri peak = 0.07010 (84) Brain_Stem (16): linear fit = 1.13 x + 0.0 (11294 voxels, overlap=0.476) Brain_Stem (16): linear fit = 1.13 x + 0.0 (11294 voxels, peak = 89), gca=88.5 gca peak = 0.12631 (89) mri peak = 0.11056 (101) Right_VentralDC (60): linear fit = 1.16 x + 0.0 (1026 voxels, overlap=0.013) Right_VentralDC (60): linear fit = 1.16 x + 0.0 (1026 voxels, peak = 104), gca=103.7 gca peak = 0.14500 (87) mri peak = 0.09807 (101) Left_VentralDC (28): linear fit = 1.15 x + 0.0 (1223 voxels, overlap=0.011) Left_VentralDC (28): linear fit = 1.15 x + 0.0 (1223 voxels, peak = 100), gca=100.5 gca peak = 0.14975 (24) mri peak = 0.16320 (21) Third_Ventricle (14): linear fit = 0.85 x + 0.0 (674 voxels, overlap=0.592) Third_Ventricle (14): linear fit = 0.85 x + 0.0 (674 voxels, peak = 20), gca=20.3 gca peak = 0.19357 (14) mri peak = 0.16568 (21) Fourth_Ventricle (15): linear fit = 1.25 x + 0.0 (506 voxels, overlap=0.456) Fourth_Ventricle (15): linear fit = 1.25 x + 0.0 (506 voxels, peak = 17), gca=17.4 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.16825 (27) gca peak Left_Thalamus = 1.00000 (94) gca peak CSF = 0.23379 (36) gca peak Left_Accumbens_area = 0.70037 (62) gca peak Left_undetermined = 1.00000 (26) gca peak Left_vessel = 0.75997 (52) gca peak Left_choroid_plexus = 0.12089 (35) gca peak Right_Inf_Lat_Vent = 0.24655 (23) gca peak Right_Amygdala = 0.33601 (57) gca peak Right_Accumbens_area = 0.45042 (65) gca peak Right_vessel = 0.82168 (52) gca peak Right_choroid_plexus = 0.14516 (37) gca peak Fifth_Ventricle = 0.65475 (32) gca peak WM_hypointensities = 0.07854 (76) gca peak non_WM_hypointensities = 0.08491 (43) gca peak Optic_Chiasm = 0.71127 (75) not using caudate to estimate GM means setting label Right_Amygdala based on Left_Amygdala = 1.16 x + 0: 66 estimating mean gm scale to be 1.23 x + 0.0 estimating mean wm scale to be 1.01 x + 0.0 estimating mean csf scale to be 0.96 x + 0.0 Right_Pallidum too bright - rescaling by 0.989 (from 1.085) to 101.9 (was 103.1) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.19905 (14) mri peak = 0.09959 (14) Left_Lateral_Ventricle (4): linear fit = 1.03 x + 0.0 (9450 voxels, overlap=0.922) Left_Lateral_Ventricle (4): linear fit = 1.03 x + 0.0 (9450 voxels, peak = 14), gca=14.5 gca peak = 0.19108 (13) mri peak = 0.09783 (15) Right_Lateral_Ventricle (43): linear fit = 1.12 x + 0.0 (11452 voxels, overlap=0.746) Right_Lateral_Ventricle (43): linear fit = 1.12 x + 0.0 (11452 voxels, peak = 14), gca=14.5 gca peak = 0.22544 (102) mri peak = 0.13616 (104) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (336 voxels, overlap=1.004) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (336 voxels, peak = 103), gca=102.5 gca peak = 0.16204 (100) mri peak = 0.09699 (100) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (600 voxels, overlap=1.011) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (600 voxels, peak = 100), gca=100.0 gca peak = 0.23905 (68) mri peak = 0.10405 (71) Right_Hippocampus (53): linear fit = 0.96 x + 0.0 (432 voxels, overlap=1.001) Right_Hippocampus (53): linear fit = 0.96 x + 0.0 (432 voxels, peak = 66), gca=65.6 gca peak = 0.27241 (67) mri peak = 0.07725 (68) Left_Hippocampus (17): linear fit = 1.05 x + 0.0 (810 voxels, overlap=1.006) Left_Hippocampus (17): linear fit = 1.05 x + 0.0 (810 voxels, peak = 71), gca=70.7 gca peak = 0.07795 (104) mri peak = 0.10503 (104) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (12041 voxels, overlap=0.707) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (12041 voxels, peak = 103), gca=103.5 gca peak = 0.07821 (106) mri peak = 0.09291 (107) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (15437 voxels, overlap=0.679) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (15437 voxels, peak = 105), gca=105.5 gca peak = 0.07283 (78) mri peak = 0.03399 (80) Left_Cerebral_Cortex (3): linear fit = 0.98 x + 0.0 (16596 voxels, overlap=0.822) Left_Cerebral_Cortex (3): linear fit = 0.98 x + 0.0 (16596 voxels, peak = 76), gca=76.1 gca peak = 0.08771 (78) mri peak = 0.03790 (80) Right_Cerebral_Cortex (42): linear fit = 1.04 x + 0.0 (13950 voxels, overlap=0.942) Right_Cerebral_Cortex (42): linear fit = 1.04 x + 0.0 (13950 voxels, peak = 82), gca=81.5 gca peak = 0.21464 (83) mri peak = 0.07959 (84) Right_Caudate (50): linear fit = 0.99 x + 0.0 (711 voxels, overlap=1.002) Right_Caudate (50): linear fit = 0.99 x + 0.0 (711 voxels, peak = 82), gca=81.8 gca peak = 0.16159 (84) mri peak = 0.11392 (79) Left_Caudate (11): linear fit = 0.99 x + 0.0 (664 voxels, overlap=1.002) Left_Caudate (11): linear fit = 0.99 x + 0.0 (664 voxels, peak = 83), gca=82.7 gca peak = 0.12892 (62) mri peak = 0.06366 (63) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (24847 voxels, overlap=0.982) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (24847 voxels, peak = 62), gca=62.0 gca peak = 0.13119 (62) mri peak = 0.06334 (63) Right_Cerebellum_Cortex (47): linear fit = 1.00 x + 0.0 (25923 voxels, overlap=0.991) Right_Cerebellum_Cortex (47): linear fit = 1.00 x + 0.0 (25923 voxels, peak = 62), gca=62.0 gca peak = 0.15889 (90) mri peak = 0.17187 (90) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4905 voxels, overlap=0.865) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4905 voxels, peak = 90), gca=90.0 gca peak = 0.15165 (90) mri peak = 0.21318 (89) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (5515 voxels, overlap=0.754) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (5515 voxels, peak = 90), gca=90.0 gca peak = 0.30590 (68) mri peak = 0.11628 (69) Left_Amygdala (18): linear fit = 1.00 x + 0.0 (172 voxels, overlap=0.991) Left_Amygdala (18): linear fit = 1.00 x + 0.0 (172 voxels, peak = 68), gca=68.0 gca peak = 0.30737 (66) mri peak = 0.09109 (50) gca peak = 0.09712 (92) mri peak = 0.07761 (91) Left_Thalamus_Proper (10): linear fit = 0.99 x + 0.0 (3080 voxels, overlap=0.897) Left_Thalamus_Proper (10): linear fit = 0.99 x + 0.0 (3080 voxels, peak = 91), gca=90.6 gca peak = 0.09503 (89) mri peak = 0.09014 (91) Right_Thalamus_Proper (49): linear fit = 0.99 x + 0.0 (2534 voxels, overlap=0.915) Right_Thalamus_Proper (49): linear fit = 0.99 x + 0.0 (2534 voxels, peak = 88), gca=87.7 gca peak = 0.08903 (82) mri peak = 0.14308 (82) Left_Putamen (12): linear fit = 1.00 x + 0.0 (636 voxels, overlap=0.684) Left_Putamen (12): linear fit = 1.00 x + 0.0 (636 voxels, peak = 82), gca=82.0 gca peak = 0.10306 (89) mri peak = 0.13953 (90) Right_Putamen (51): linear fit = 1.00 x + 0.0 (194 voxels, overlap=0.603) Right_Putamen (51): linear fit = 1.00 x + 0.0 (194 voxels, peak = 89), gca=88.6 gca peak = 0.07552 (89) mri peak = 0.07010 (84) Brain_Stem (16): linear fit = 0.98 x + 0.0 (11294 voxels, overlap=0.807) Brain_Stem (16): linear fit = 0.98 x + 0.0 (11294 voxels, peak = 87), gca=86.8 gca peak = 0.10539 (104) mri peak = 0.11056 (101) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1026 voxels, overlap=0.819) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1026 voxels, peak = 103), gca=103.5 gca peak = 0.15005 (99) mri peak = 0.09807 (101) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1223 voxels, overlap=0.874) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1223 voxels, peak = 99), gca=99.5 gca peak = 0.21251 (22) mri peak = 0.16320 (21) Third_Ventricle (14): linear fit = 1.00 x + 0.0 (674 voxels, overlap=1.000) Third_Ventricle (14): linear fit = 1.00 x + 0.0 (674 voxels, peak = 22), gca=22.0 gca peak = 0.16542 (20) mri peak = 0.16568 (21) Fourth_Ventricle (15): linear fit = 1.00 x + 0.0 (506 voxels, overlap=0.723) Fourth_Ventricle (15): linear fit = 1.00 x + 0.0 (506 voxels, peak = 20), gca=20.0 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.15131 (30) gca peak Left_Thalamus = 0.64095 (103) gca peak CSF = 0.25901 (35) gca peak Left_Accumbens_area = 0.62172 (68) gca peak Left_undetermined = 1.00000 (26) gca peak Left_vessel = 0.75997 (52) gca peak Left_choroid_plexus = 0.12089 (35) gca peak Right_Inf_Lat_Vent = 0.20093 (28) gca peak Right_Amygdala = 0.30737 (66) gca peak Right_Accumbens_area = 0.29899 (82) gca peak Right_vessel = 0.82168 (52) gca peak Right_choroid_plexus = 0.14516 (37) gca peak Fifth_Ventricle = 0.54107 (31) gca peak WM_hypointensities = 0.07639 (78) gca peak non_WM_hypointensities = 0.09744 (44) gca peak Optic_Chiasm = 0.61287 (75) not using caudate to estimate GM means setting label Right_Amygdala based on Left_Amygdala = 1.00 x + 0: 68 estimating mean gm scale to be 1.01 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 1.04 x + 0.0 Right_Pallidum too bright - rescaling by 0.989 (from 1.005) to 101.3 (was 102.5) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt 39580 voxels changed in iteration 0 of unlikely voxel relabeling 212 voxels changed in iteration 1 of unlikely voxel relabeling 10 voxels changed in iteration 2 of unlikely voxel relabeling 1 voxels changed in iteration 3 of unlikely voxel relabeling 0 voxels changed in iteration 4 of unlikely voxel relabeling 45427 gm and wm labels changed (%30 to gray, %70 to white out of all changed labels) 208 hippocampal voxels changed. 0 amygdala voxels changed. pass 1: 57788 changed. image ll: -2.116, PF=0.500 pass 2: 13533 changed. image ll: -2.115, PF=0.500 pass 3: 4436 changed. 34969 voxels changed in iteration 0 of unlikely voxel relabeling 155 voxels changed in iteration 1 of unlikely voxel relabeling 12 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 4760 voxels changed in iteration 0 of unlikely voxel relabeling 127 voxels changed in iteration 1 of unlikely voxel relabeling 2 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 4779 voxels changed in iteration 0 of unlikely voxel relabeling 29 voxels changed in iteration 1 of unlikely voxel relabeling 1 voxels changed in iteration 2 of unlikely voxel relabeling 2 voxels changed in iteration 3 of unlikely voxel relabeling 0 voxels changed in iteration 4 of unlikely voxel relabeling 4838 voxels changed in iteration 0 of unlikely voxel relabeling 46 voxels changed in iteration 1 of unlikely voxel relabeling 1 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling MRItoUCHAR: min=0, max=85 MRItoUCHAR: converting to UCHAR writing labeled volume to aseg.auto_noCCseg.mgz mri_ca_label utimesec 3863.828608 mri_ca_label stimesec 3.943400 mri_ca_label ru_maxrss 2090272 mri_ca_label ru_ixrss 0 mri_ca_label ru_idrss 0 mri_ca_label ru_isrss 0 mri_ca_label ru_minflt 1431725 mri_ca_label ru_majflt 9 mri_ca_label ru_nswap 0 mri_ca_label ru_inblock 66568 mri_ca_label ru_oublock 440 mri_ca_label ru_msgsnd 0 mri_ca_label ru_msgrcv 0 mri_ca_label ru_nsignals 0 mri_ca_label ru_nvcsw 46 mri_ca_label ru_nivcsw 7465 auto-labeling took 64 minutes and 27 seconds. mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/transforms/cc_up.lta assurgentMRI07112018 will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/transforms/cc_up.lta reading aseg from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/aseg.auto_noCCseg.mgz reading norm from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/norm.mgz 37141 voxels in left wm, 28866 in right wm, xrange [121, 134] searching rotation angles z=[-2 12], y=[-11 3] searching scale 1 Z rot -2.0 searching scale 1 Z rot -1.7 searching scale 1 Z rot -1.5 searching scale 1 Z rot -1.2 searching scale 1 Z rot -1.0 searching scale 1 Z rot -0.7 searching scale 1 Z rot -0.5 searching scale 1 Z rot -0.2 searching scale 1 Z rot 0.0 searching scale 1 Z rot 0.3 searching scale 1 Z rot 0.5 searching scale 1 Z rot 0.8 searching scale 1 Z rot 1.0 searching scale 1 Z rot 1.3 searching scale 1 Z rot 1.5 searching scale 1 Z rot 1.8 searching scale 1 Z rot 2.0 searching scale 1 Z rot 2.3 searching scale 1 Z rot 2.5 searching scale 1 Z rot 2.8 searching scale 1 Z rot 3.0 searching scale 1 Z rot 3.3 searching scale 1 Z rot 3.5 searching scale 1 Z rot 3.8 searching scale 1 Z rot 4.0 searching scale 1 Z rot 4.3 searching scale 1 Z rot 4.5 searching scale 1 Z rot 4.8 searching scale 1 Z rot 5.0 searching scale 1 Z rot 5.3 searching scale 1 Z rot 5.5 searching scale 1 Z rot 5.8 searching scale 1 Z rot 6.0 searching scale 1 Z rot 6.3 searching scale 1 Z rot 6.5 searching scale 1 Z rot 6.8 searching scale 1 Z rot 7.0 searching scale 1 Z rot 7.3 searching scale 1 Z rot 7.5 searching scale 1 Z rot 7.8 searching scale 1 Z rot 8.0 searching scale 1 Z rot 8.3 searching scale 1 Z rot 8.5 searching scale 1 Z rot 8.8 searching scale 1 Z rot 9.0 searching scale 1 Z rot 9.3 searching scale 1 Z rot 9.5 searching scale 1 Z rot 9.8 searching scale 1 Z rot 10.0 searching scale 1 Z rot 10.3 searching scale 1 Z rot 10.5 searching scale 1 Z rot 10.8 searching scale 1 Z rot 11.0 global minimum found at slice 126.0, rotations (-3.32, 4.29) final transformation (x=126.0, yr=-3.322, zr=4.294): 0.99552 -0.07488 -0.05779 15.27050; 0.07475 0.99719 -0.00434 18.25088; 0.05795 0.00000 0.99832 31.84809; 0.00000 0.00000 0.00000 1.00000; updating x range to be [124, 132] in xformed coordinates best xformed slice 127 cc center is found at 127 101 89 eigenvectors: 0.00227 0.00023 1.00000; 0.09884 -0.99510 0.00001; 0.99510 0.09884 -0.00228; error in mid anterior detected - correcting... writing aseg with callosum to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/aseg.auto.mgz... corpus callosum segmentation took 0.8 minutes #-------------------------------------- #@# Merge ASeg Tue Jul 17 19:05:40 CDT 2018 cp aseg.auto.mgz aseg.presurf.mgz #-------------------------------------------- #@# Intensity Normalization2 Tue Jul 17 19:05:41 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_normalize -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz assuming input volume is MGH (Van der Kouwe) MP-RAGE using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading from norm.mgz... Reading aseg aseg.presurf.mgz normalizing image... processing with aseg removing outliers in the aseg WM... 1153 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 109 gm peak at 69 (69), valley at 50 (50) csf peak at 15, setting threshold to 51 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 74 (74), valley at 49 (49) csf peak at 15, setting threshold to 54 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 3 minutes and 25 seconds. #-------------------------------------------- #@# Mask BFS Tue Jul 17 19:09:08 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1457223 voxels in mask (pct= 8.69) Writing masked volume to brain.finalsurfs.mgz...done. #-------------------------------------------- #@# WM Segmentation Tue Jul 17 19:09:10 CDT 2018 mri_segment -mprage brain.mgz wm.seg.mgz doing initial intensity segmentation... using local statistics to label ambiguous voxels... computing class statistics for intensity windows... WM (104.0): 105.0 +- 4.7 [79.0 --> 125.0] GM (70.0) : 67.7 +- 11.3 [30.0 --> 95.0] setting bottom of white matter range to 79.0 setting top of gray matter range to 90.3 doing initial intensity segmentation... using local statistics to label ambiguous voxels... using local geometry to label remaining ambiguous voxels... reclassifying voxels using Gaussian border classifier... removing voxels with positive offset direction... smoothing T1 volume with sigma = 0.250 removing 1-dimensional structures... 2300 sparsely connected voxels removed... thickening thin strands.... 20 segments, 4400 filled 9 bright non-wm voxels segmented. 1423 diagonally connected voxels added... white matter segmentation took 1.4 minutes writing output to wm.seg.mgz... assuming input volume is MGH (Van der Kouwe) MP-RAGE mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz preserving editing changes in input volume... auto filling took 1.00 minutes reading wm segmentation from wm.seg.mgz... 1802 voxels added to wm to prevent paths from MTL structures to cortex 5225 additional wm voxels added 0 additional wm voxels added SEG EDIT: 97237 voxels turned on, 41429 voxels turned off. propagating editing to output volume from wm.seg.mgz 115,126,128 old 110 new 110 115,126,128 old 110 new 110 writing edited volume to wm.asegedit.mgz.... mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 38 found - 38 modified | TOTAL: 38 pass 2 (xy+): 0 found - 38 modified | TOTAL: 38 pass 1 (xy-): 30 found - 30 modified | TOTAL: 68 pass 2 (xy-): 0 found - 30 modified | TOTAL: 68 pass 1 (yz+): 24 found - 24 modified | TOTAL: 92 pass 2 (yz+): 0 found - 24 modified | TOTAL: 92 pass 1 (yz-): 19 found - 19 modified | TOTAL: 111 pass 2 (yz-): 0 found - 19 modified | TOTAL: 111 pass 1 (xz+): 16 found - 16 modified | TOTAL: 127 pass 2 (xz+): 0 found - 16 modified | TOTAL: 127 pass 1 (xz-): 20 found - 20 modified | TOTAL: 147 pass 2 (xz-): 0 found - 20 modified | TOTAL: 147 Iteration Number : 1 pass 1 (+++): 6 found - 6 modified | TOTAL: 6 pass 2 (+++): 0 found - 6 modified | TOTAL: 6 pass 1 (+++): 11 found - 11 modified | TOTAL: 17 pass 2 (+++): 0 found - 11 modified | TOTAL: 17 pass 1 (+++): 6 found - 6 modified | TOTAL: 23 pass 2 (+++): 0 found - 6 modified | TOTAL: 23 pass 1 (+++): 6 found - 6 modified | TOTAL: 29 pass 2 (+++): 0 found - 6 modified | TOTAL: 29 Iteration Number : 1 pass 1 (++): 43 found - 43 modified | TOTAL: 43 pass 2 (++): 0 found - 43 modified | TOTAL: 43 pass 1 (+-): 50 found - 50 modified | TOTAL: 93 pass 2 (+-): 0 found - 50 modified | TOTAL: 93 pass 1 (--): 36 found - 36 modified | TOTAL: 129 pass 2 (--): 0 found - 36 modified | TOTAL: 129 pass 1 (-+): 36 found - 36 modified | TOTAL: 165 pass 2 (-+): 0 found - 36 modified | TOTAL: 165 Iteration Number : 2 pass 1 (xy+): 3 found - 3 modified | TOTAL: 3 pass 2 (xy+): 0 found - 3 modified | TOTAL: 3 pass 1 (xy-): 1 found - 1 modified | TOTAL: 4 pass 2 (xy-): 0 found - 1 modified | TOTAL: 4 pass 1 (yz+): 0 found - 0 modified | TOTAL: 4 pass 1 (yz-): 4 found - 4 modified | TOTAL: 8 pass 2 (yz-): 0 found - 4 modified | TOTAL: 8 pass 1 (xz+): 3 found - 3 modified | TOTAL: 11 pass 2 (xz+): 0 found - 3 modified | TOTAL: 11 pass 1 (xz-): 3 found - 3 modified | TOTAL: 14 pass 2 (xz-): 0 found - 3 modified | TOTAL: 14 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 Iteration Number : 2 pass 1 (++): 2 found - 2 modified | TOTAL: 2 pass 2 (++): 0 found - 2 modified | TOTAL: 2 pass 1 (+-): 0 found - 0 modified | TOTAL: 2 pass 1 (--): 3 found - 3 modified | TOTAL: 5 pass 2 (--): 0 found - 3 modified | TOTAL: 5 pass 1 (-+): 0 found - 0 modified | TOTAL: 5 Iteration Number : 3 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 0 found - 0 modified | TOTAL: 1 pass 1 (yz-): 0 found - 0 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 363 (out of 486358: 0.074636) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done #-------------------------------------------- #@# Fill Tue Jul 17 19:11:39 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.auto_noCCseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.05004 -0.13732 -0.03207 8.49174; 0.19200 1.17098 -0.00027 -33.99435; 0.03575 -0.00433 1.02178 -19.08255; 0.00000 0.00000 0.00000 1.00000; voxel to talairach voxel transform 1.05004 -0.13732 -0.03207 8.49174; 0.19200 1.17098 -0.00027 -33.99435; 0.03575 -0.00433 1.02178 -19.08255; 0.00000 0.00000 0.00000 1.00000; reading segmented volume aseg.auto_noCCseg.mgz... Looking for area (min, max) = (350, 1400) area[0] = 1147 (min = 350, max = 1400), aspect = 0.43 (min = 0.10, max = 0.75) no need to search using seed (126, 112, 91), TAL = (2.0, -37.0, 16.0) talairach voxel to voxel transform 0.93136 0.10933 0.02926 -3.63396; -0.15272 0.83606 -0.00457 29.63083; -0.03323 -0.00028 0.97764 18.92854; 0.00000 0.00000 0.00000 1.00000; segmentation indicates cc at (126, 112, 91) --> (2.0, -37.0, 16.0) done. writing output to filled.mgz... filling took 0.8 minutes talairach cc position changed to (2.00, -37.00, 16.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(20.00, -37.00, 16.00) SRC: (111.86, 106.36, 104.27) search lh wm seed point around talairach space (-16.00, -37.00, 16.00), SRC: (145.39, 100.86, 103.08) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram to separate WM into two hemispheres ... Find the largest connected component for each hemisphere ... #-------------------------------------------- #@# Tessellate lh Tue Jul 17 19:12:25 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 3 found - 3 modified | TOTAL: 3 pass 2 (xy-): 0 found - 3 modified | TOTAL: 3 pass 1 (yz+): 2 found - 2 modified | TOTAL: 5 pass 2 (yz+): 0 found - 2 modified | TOTAL: 5 pass 1 (yz-): 0 found - 0 modified | TOTAL: 5 pass 1 (xz+): 2 found - 2 modified | TOTAL: 7 pass 2 (xz+): 0 found - 2 modified | TOTAL: 7 pass 1 (xz-): 0 found - 0 modified | TOTAL: 7 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 8 (out of 242039: 0.003305) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ slice 40: 221 vertices, 263 faces slice 50: 4631 vertices, 4802 faces slice 60: 10860 vertices, 11120 faces slice 70: 18599 vertices, 18910 faces slice 80: 27427 vertices, 27702 faces slice 90: 35253 vertices, 35559 faces slice 100: 43975 vertices, 44284 faces slice 110: 53824 vertices, 54185 faces slice 120: 64462 vertices, 64836 faces slice 130: 74874 vertices, 75277 faces slice 140: 85030 vertices, 85406 faces slice 150: 93180 vertices, 93452 faces slice 160: 99643 vertices, 99929 faces slice 170: 106637 vertices, 106919 faces slice 180: 112230 vertices, 112455 faces slice 190: 117269 vertices, 117474 faces slice 200: 119940 vertices, 120009 faces slice 210: 119980 vertices, 120030 faces slice 220: 119980 vertices, 120030 faces slice 230: 119980 vertices, 120030 faces slice 240: 119980 vertices, 120030 faces slice 250: 119980 vertices, 120030 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 119980 voxel in cpt #1: X=-50 [v=119980,e=360090,f=240060] located at (-26.264462, -13.035148, 29.079346) For the whole surface: X=-50 [v=119980,e=360090,f=240060] One single component has been found nothing to do done #-------------------------------------------- #@# Tessellate rh Tue Jul 17 19:12:32 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 2 found - 2 modified | TOTAL: 2 pass 2 (xy+): 0 found - 2 modified | TOTAL: 2 pass 1 (xy-): 1 found - 1 modified | TOTAL: 3 pass 2 (xy-): 0 found - 1 modified | TOTAL: 3 pass 1 (yz+): 2 found - 2 modified | TOTAL: 5 pass 2 (yz+): 0 found - 2 modified | TOTAL: 5 pass 1 (yz-): 0 found - 0 modified | TOTAL: 5 pass 1 (xz+): 0 found - 0 modified | TOTAL: 5 pass 1 (xz-): 0 found - 0 modified | TOTAL: 5 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 1 found - 1 modified | TOTAL: 2 pass 2 (--): 0 found - 1 modified | TOTAL: 2 pass 1 (-+): 2 found - 2 modified | TOTAL: 4 pass 2 (-+): 0 found - 2 modified | TOTAL: 4 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 9 (out of 226114: 0.003980) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ slice 50: 1403 vertices, 1493 faces slice 60: 5658 vertices, 5855 faces slice 70: 12064 vertices, 12293 faces slice 80: 19784 vertices, 20100 faces slice 90: 28569 vertices, 28834 faces slice 100: 37456 vertices, 37760 faces slice 110: 47485 vertices, 47848 faces slice 120: 58372 vertices, 58756 faces slice 130: 68701 vertices, 69075 faces slice 140: 78740 vertices, 79119 faces slice 150: 87083 vertices, 87364 faces slice 160: 93265 vertices, 93517 faces slice 170: 99462 vertices, 99725 faces slice 180: 105486 vertices, 105740 faces slice 190: 110426 vertices, 110678 faces slice 200: 113459 vertices, 113546 faces slice 210: 113518 vertices, 113584 faces slice 220: 113518 vertices, 113584 faces slice 230: 113518 vertices, 113584 faces slice 240: 113518 vertices, 113584 faces slice 250: 113518 vertices, 113584 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 113518 voxel in cpt #1: X=-66 [v=113518,e=340752,f=227168] located at (26.715313, -9.213156, 22.307106) For the whole surface: X=-66 [v=113518,e=340752,f=227168] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 lh Tue Jul 17 19:12:37 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Smooth1 rh Tue Jul 17 19:12:41 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh Tue Jul 17 19:12:45 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix Not saving sulc Reading ../surf/lh.smoothwm.nofix avg radius = 46.3 mm, total surface area = 64371 mm^2 writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.4 minutes step 000: RMS=0.154 (target=0.015) step 005: RMS=0.117 (target=0.015) step 010: RMS=0.087 (target=0.015) step 015: RMS=0.073 (target=0.015) step 020: RMS=0.062 (target=0.015) step 025: RMS=0.055 (target=0.015) step 030: RMS=0.050 (target=0.015) step 035: RMS=0.046 (target=0.015) step 040: RMS=0.043 (target=0.015) step 045: RMS=0.041 (target=0.015) step 050: RMS=0.040 (target=0.015) step 055: RMS=0.039 (target=0.015) step 060: RMS=0.039 (target=0.015) inflation complete. Not saving sulc mris_inflate utimesec 26.274005 mris_inflate stimesec 0.091986 mris_inflate ru_maxrss 154224 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 19789 mris_inflate ru_majflt 4 mris_inflate ru_nswap 0 mris_inflate ru_inblock 9464 mris_inflate ru_oublock 8448 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 52 mris_inflate ru_nivcsw 197 #-------------------------------------------- #@# Inflation1 rh Tue Jul 17 19:13:12 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix Not saving sulc Reading ../surf/rh.smoothwm.nofix avg radius = 44.5 mm, total surface area = 60398 mm^2 writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.4 minutes step 000: RMS=0.158 (target=0.015) step 005: RMS=0.121 (target=0.015) step 010: RMS=0.093 (target=0.015) step 015: RMS=0.080 (target=0.015) step 020: RMS=0.072 (target=0.015) step 025: RMS=0.067 (target=0.015) step 030: RMS=0.061 (target=0.015) step 035: RMS=0.058 (target=0.015) step 040: RMS=0.056 (target=0.015) step 045: RMS=0.055 (target=0.015) step 050: RMS=0.054 (target=0.015) step 055: RMS=0.054 (target=0.015) step 060: RMS=0.053 (target=0.015) inflation complete. Not saving sulc mris_inflate utimesec 25.055191 mris_inflate stimesec 0.081987 mris_inflate ru_maxrss 146328 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 19352 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 7992 mris_inflate ru_oublock 7992 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 74 mris_inflate ru_nivcsw 184 #-------------------------------------------- #@# QSphere lh Tue Jul 17 19:13:37 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.04 +- 0.61 (0.00-->7.62) (max @ vno 41973 --> 41974) face area 0.03 +- 0.03 (-0.10-->0.99) == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.319... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=177.135, avgs=0 005/300: dt: 0.9000, rms radial error=176.875, avgs=0 010/300: dt: 0.9000, rms radial error=176.320, avgs=0 015/300: dt: 0.9000, rms radial error=175.591, avgs=0 020/300: dt: 0.9000, rms radial error=174.761, avgs=0 025/300: dt: 0.9000, rms radial error=173.873, avgs=0 030/300: dt: 0.9000, rms radial error=172.953, avgs=0 035/300: dt: 0.9000, rms radial error=172.016, avgs=0 040/300: dt: 0.9000, rms radial error=171.071, avgs=0 045/300: dt: 0.9000, rms radial error=170.123, avgs=0 050/300: dt: 0.9000, rms radial error=169.175, avgs=0 055/300: dt: 0.9000, rms radial error=168.230, avgs=0 060/300: dt: 0.9000, rms radial error=167.287, avgs=0 065/300: dt: 0.9000, rms radial error=166.349, avgs=0 070/300: dt: 0.9000, rms radial error=165.415, avgs=0 075/300: dt: 0.9000, rms radial error=164.486, avgs=0 080/300: dt: 0.9000, rms radial error=163.562, avgs=0 085/300: dt: 0.9000, rms radial error=162.642, avgs=0 090/300: dt: 0.9000, rms radial error=161.727, avgs=0 095/300: dt: 0.9000, rms radial error=160.817, avgs=0 100/300: dt: 0.9000, rms radial error=159.912, avgs=0 105/300: dt: 0.9000, rms radial error=159.012, avgs=0 110/300: dt: 0.9000, rms radial error=158.116, avgs=0 115/300: dt: 0.9000, rms radial error=157.225, avgs=0 120/300: dt: 0.9000, rms radial error=156.339, avgs=0 125/300: dt: 0.9000, rms radial error=155.458, avgs=0 130/300: dt: 0.9000, rms radial error=154.581, avgs=0 135/300: dt: 0.9000, rms radial error=153.710, avgs=0 140/300: dt: 0.9000, rms radial error=152.843, avgs=0 145/300: dt: 0.9000, rms radial error=151.980, avgs=0 150/300: dt: 0.9000, rms radial error=151.123, avgs=0 155/300: dt: 0.9000, rms radial error=150.270, avgs=0 160/300: dt: 0.9000, rms radial error=149.422, avgs=0 165/300: dt: 0.9000, rms radial error=148.578, avgs=0 170/300: dt: 0.9000, rms radial error=147.740, avgs=0 175/300: dt: 0.9000, rms radial error=146.906, avgs=0 180/300: dt: 0.9000, rms radial error=146.076, avgs=0 185/300: dt: 0.9000, rms radial error=145.252, avgs=0 190/300: dt: 0.9000, rms radial error=144.432, avgs=0 195/300: dt: 0.9000, rms radial error=143.616, avgs=0 200/300: dt: 0.9000, rms radial error=142.805, avgs=0 205/300: dt: 0.9000, rms radial error=141.999, avgs=0 210/300: dt: 0.9000, rms radial error=141.197, avgs=0 215/300: dt: 0.9000, rms radial error=140.400, avgs=0 220/300: dt: 0.9000, rms radial error=139.607, avgs=0 225/300: dt: 0.9000, rms radial error=138.819, avgs=0 230/300: dt: 0.9000, rms radial error=138.035, avgs=0 235/300: dt: 0.9000, rms radial error=137.255, avgs=0 240/300: dt: 0.9000, rms radial error=136.480, avgs=0 245/300: dt: 0.9000, rms radial error=135.709, avgs=0 250/300: dt: 0.9000, rms radial error=134.943, avgs=0 255/300: dt: 0.9000, rms radial error=134.181, avgs=0 260/300: dt: 0.9000, rms radial error=133.424, avgs=0 265/300: dt: 0.9000, rms radial error=132.671, avgs=0 270/300: dt: 0.9000, rms radial error=131.922, avgs=0 275/300: dt: 0.9000, rms radial error=131.177, avgs=0 280/300: dt: 0.9000, rms radial error=130.436, avgs=0 285/300: dt: 0.9000, rms radial error=129.699, avgs=0 290/300: dt: 0.9000, rms radial error=128.967, avgs=0 295/300: dt: 0.9000, rms radial error=128.239, avgs=0 300/300: dt: 0.9000, rms radial error=127.515, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 13880.32 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00015 epoch 2 (K=40.0), pass 1, starting sse = 2281.72 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00026 epoch 3 (K=160.0), pass 1, starting sse = 237.60 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.09/11 = 0.00841 epoch 4 (K=640.0), pass 1, starting sse = 16.95 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.19/17 = 0.01128 final distance error %27.26 writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.05 hours mris_sphere utimesec 185.711767 mris_sphere stimesec 0.109983 mris_sphere ru_maxrss 154420 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 20352 mris_sphere ru_majflt 7 mris_sphere ru_nswap 0 mris_sphere ru_inblock 9664 mris_sphere ru_oublock 8448 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 68 mris_sphere ru_nivcsw 388 FSRUNTIME@ mris_sphere 0.0517 hours 1 threads #-------------------------------------------- #@# QSphere rh Tue Jul 17 19:16:43 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.06 +- 0.63 (0.00-->8.78) (max @ vno 40684 --> 40697) face area 0.03 +- 0.04 (-0.19-->1.19) == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.329... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=177.237, avgs=0 005/300: dt: 0.9000, rms radial error=176.978, avgs=0 010/300: dt: 0.9000, rms radial error=176.422, avgs=0 015/300: dt: 0.9000, rms radial error=175.691, avgs=0 020/300: dt: 0.9000, rms radial error=174.860, avgs=0 025/300: dt: 0.9000, rms radial error=173.970, avgs=0 030/300: dt: 0.9000, rms radial error=173.050, avgs=0 035/300: dt: 0.9000, rms radial error=172.112, avgs=0 040/300: dt: 0.9000, rms radial error=171.166, avgs=0 045/300: dt: 0.9000, rms radial error=170.218, avgs=0 050/300: dt: 0.9000, rms radial error=169.271, avgs=0 055/300: dt: 0.9000, rms radial error=168.327, avgs=0 060/300: dt: 0.9000, rms radial error=167.386, avgs=0 065/300: dt: 0.9000, rms radial error=166.450, avgs=0 070/300: dt: 0.9000, rms radial error=165.518, avgs=0 075/300: dt: 0.9000, rms radial error=164.591, avgs=0 080/300: dt: 0.9000, rms radial error=163.668, avgs=0 085/300: dt: 0.9000, rms radial error=162.751, avgs=0 090/300: dt: 0.9000, rms radial error=161.838, avgs=0 095/300: dt: 0.9000, rms radial error=160.930, avgs=0 100/300: dt: 0.9000, rms radial error=160.027, avgs=0 105/300: dt: 0.9000, rms radial error=159.129, avgs=0 110/300: dt: 0.9000, rms radial error=158.236, avgs=0 115/300: dt: 0.9000, rms radial error=157.348, avgs=0 120/300: dt: 0.9000, rms radial error=156.465, avgs=0 125/300: dt: 0.9000, rms radial error=155.586, avgs=0 130/300: dt: 0.9000, rms radial error=154.712, avgs=0 135/300: dt: 0.9000, rms radial error=153.843, avgs=0 140/300: dt: 0.9000, rms radial error=152.979, avgs=0 145/300: dt: 0.9000, rms radial error=152.119, avgs=0 150/300: dt: 0.9000, rms radial error=151.264, avgs=0 155/300: dt: 0.9000, rms radial error=150.414, avgs=0 160/300: dt: 0.9000, rms radial error=149.568, avgs=0 165/300: dt: 0.9000, rms radial error=148.727, avgs=0 170/300: dt: 0.9000, rms radial error=147.890, avgs=0 175/300: dt: 0.9000, rms radial error=147.058, avgs=0 180/300: dt: 0.9000, rms radial error=146.231, avgs=0 185/300: dt: 0.9000, rms radial error=145.408, avgs=0 190/300: dt: 0.9000, rms radial error=144.590, avgs=0 195/300: dt: 0.9000, rms radial error=143.776, avgs=0 200/300: dt: 0.9000, rms radial error=142.966, avgs=0 205/300: dt: 0.9000, rms radial error=142.161, avgs=0 210/300: dt: 0.9000, rms radial error=141.361, avgs=0 215/300: dt: 0.9000, rms radial error=140.565, avgs=0 220/300: dt: 0.9000, rms radial error=139.773, avgs=0 225/300: dt: 0.9000, rms radial error=138.986, avgs=0 230/300: dt: 0.9000, rms radial error=138.203, avgs=0 235/300: dt: 0.9000, rms radial error=137.424, avgs=0 240/300: dt: 0.9000, rms radial error=136.650, avgs=0 245/300: dt: 0.9000, rms radial error=135.880, avgs=0 250/300: dt: 0.9000, rms radial error=135.114, avgs=0 255/300: dt: 0.9000, rms radial error=134.353, avgs=0 260/300: dt: 0.9000, rms radial error=133.595, avgs=0 265/300: dt: 0.9000, rms radial error=132.842, avgs=0 270/300: dt: 0.9000, rms radial error=132.094, avgs=0 275/300: dt: 0.9000, rms radial error=131.349, avgs=0 280/300: dt: 0.9000, rms radial error=130.609, avgs=0 285/300: dt: 0.9000, rms radial error=129.872, avgs=0 290/300: dt: 0.9000, rms radial error=129.140, avgs=0 295/300: dt: 0.9000, rms radial error=128.412, avgs=0 300/300: dt: 0.9000, rms radial error=127.688, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 13018.01 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00009 epoch 2 (K=40.0), pass 1, starting sse = 2120.79 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00012 epoch 3 (K=160.0), pass 1, starting sse = 232.50 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.10/11 = 0.00903 epoch 4 (K=640.0), pass 1, starting sse = 19.96 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.08/11 = 0.00698 final distance error %26.63 writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.04 hours mris_sphere utimesec 160.202645 mris_sphere stimesec 0.108983 mris_sphere ru_maxrss 146540 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 18897 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 7992 mris_sphere ru_oublock 7992 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 51 mris_sphere ru_nivcsw 329 FSRUNTIME@ mris_sphere 0.0445 hours 1 threads #-------------------------------------------- #@# Fix Topology Copy lh Tue Jul 17 19:19:24 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts cp ../surf/lh.orig.nofix ../surf/lh.orig cp ../surf/lh.inflated.nofix ../surf/lh.inflated #-------------------------------------------- #@# Fix Topology Copy rh Tue Jul 17 19:19:24 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts cp ../surf/rh.orig.nofix ../surf/rh.orig cp ../surf/rh.inflated.nofix ../surf/rh.inflated #@# Fix Topology lh Tue Jul 17 19:19:24 CDT 2018 mris_fix_topology -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 assurgentMRI07112018 lh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ before topology correction, eno=-50 (nv=119980, nf=240060, ne=360090, g=26) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 10 iterations marking ambiguous vertices... 3622 ambiguous faces found in tessellation segmenting defects... 34 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 23 into 20 33 defects to be corrected 0 vertices coincident reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -9.4862 (-4.7431) -vertex loglikelihood: -6.5908 (-3.2954) -normal dot loglikelihood: -3.6625 (-3.6625) -quad curv loglikelihood: -6.1459 (-3.0730) Total Loglikelihood : -25.8855 CORRECTING DEFECT 0 (vertices=79, convex hull=125, v0=5232) After retessellation of defect 0 (v0=5232), euler #=-29 (117762,352255,234464) : difference with theory (-30) = -1 CORRECTING DEFECT 1 (vertices=27, convex hull=49, v0=7622) After retessellation of defect 1 (v0=7622), euler #=-28 (117768,352290,234494) : difference with theory (-29) = -1 CORRECTING DEFECT 2 (vertices=46, convex hull=53, v0=9205) After retessellation of defect 2 (v0=9205), euler #=-27 (117779,352343,234537) : difference with theory (-28) = -1 CORRECTING DEFECT 3 (vertices=91, convex hull=127, v0=13040) After retessellation of defect 3 (v0=13040), euler #=-26 (117832,352562,234704) : difference with theory (-27) = -1 CORRECTING DEFECT 4 (vertices=467, convex hull=242, v0=13494) After retessellation of defect 4 (v0=13494), euler #=-25 (117932,352978,235021) : difference with theory (-26) = -1 CORRECTING DEFECT 5 (vertices=29, convex hull=59, v0=14097) After retessellation of defect 5 (v0=14097), euler #=-24 (117941,353026,235061) : difference with theory (-25) = -1 CORRECTING DEFECT 6 (vertices=14, convex hull=27, v0=16643) After retessellation of defect 6 (v0=16643), euler #=-23 (117941,353032,235068) : difference with theory (-24) = -1 CORRECTING DEFECT 7 (vertices=30, convex hull=72, v0=22213) After retessellation of defect 7 (v0=22213), euler #=-22 (117950,353087,235115) : difference with theory (-23) = -1 CORRECTING DEFECT 8 (vertices=12, convex hull=18, v0=38425) After retessellation of defect 8 (v0=38425), euler #=-21 (117957,353112,235134) : difference with theory (-22) = -1 CORRECTING DEFECT 9 (vertices=52, convex hull=90, v0=41095) After retessellation of defect 9 (v0=41095), euler #=-20 (117975,353201,235206) : difference with theory (-21) = -1 CORRECTING DEFECT 10 (vertices=37, convex hull=35, v0=46260) After retessellation of defect 10 (v0=46260), euler #=-19 (117980,353229,235230) : difference with theory (-20) = -1 CORRECTING DEFECT 11 (vertices=48, convex hull=61, v0=47950) After retessellation of defect 11 (v0=47950), euler #=-19 (117989,353282,235274) : difference with theory (-19) = 0 CORRECTING DEFECT 12 (vertices=75, convex hull=118, v0=48464) After retessellation of defect 12 (v0=48464), euler #=-18 (118027,353451,235406) : difference with theory (-18) = 0 CORRECTING DEFECT 13 (vertices=6, convex hull=24, v0=49684) After retessellation of defect 13 (v0=49684), euler #=-17 (118030,353465,235418) : difference with theory (-17) = 0 CORRECTING DEFECT 14 (vertices=126, convex hull=187, v0=56777) After retessellation of defect 14 (v0=56777), euler #=-16 (118096,353745,235633) : difference with theory (-16) = 0 CORRECTING DEFECT 15 (vertices=40, convex hull=32, v0=66276) After retessellation of defect 15 (v0=66276), euler #=-15 (118101,353770,235654) : difference with theory (-15) = 0 CORRECTING DEFECT 16 (vertices=25, convex hull=60, v0=73425) After retessellation of defect 16 (v0=73425), euler #=-14 (118114,353831,235703) : difference with theory (-14) = 0 CORRECTING DEFECT 17 (vertices=413, convex hull=255, v0=74647) normal vector of length zero at vertex 119255 with 4 faces After retessellation of defect 17 (v0=74647), euler #=-13 (118242,354338,236083) : difference with theory (-13) = 0 CORRECTING DEFECT 18 (vertices=24, convex hull=59, v0=75678) After retessellation of defect 18 (v0=75678), euler #=-12 (118259,354414,236143) : difference with theory (-12) = 0 CORRECTING DEFECT 19 (vertices=33, convex hull=79, v0=81048) After retessellation of defect 19 (v0=81048), euler #=-11 (118269,354472,236192) : difference with theory (-11) = 0 CORRECTING DEFECT 20 (vertices=203, convex hull=158, v0=85804) After retessellation of defect 20 (v0=85804), euler #=-9 (118332,354742,236401) : difference with theory (-10) = -1 CORRECTING DEFECT 21 (vertices=25, convex hull=45, v0=88730) After retessellation of defect 21 (v0=88730), euler #=-8 (118334,354764,236422) : difference with theory (-9) = -1 CORRECTING DEFECT 22 (vertices=56, convex hull=36, v0=91779) After retessellation of defect 22 (v0=91779), euler #=-8 (118335,354789,236446) : difference with theory (-8) = 0 CORRECTING DEFECT 23 (vertices=14, convex hull=43, v0=95892) After retessellation of defect 23 (v0=95892), euler #=-7 (118335,354810,236468) : difference with theory (-7) = 0 CORRECTING DEFECT 24 (vertices=20, convex hull=29, v0=98935) After retessellation of defect 24 (v0=98935), euler #=-6 (118338,354827,236483) : difference with theory (-6) = 0 CORRECTING DEFECT 25 (vertices=19, convex hull=24, v0=102299) After retessellation of defect 25 (v0=102299), euler #=-5 (118342,354846,236499) : difference with theory (-5) = 0 CORRECTING DEFECT 26 (vertices=33, convex hull=77, v0=103341) After retessellation of defect 26 (v0=103341), euler #=-4 (118362,354935,236569) : difference with theory (-4) = 0 CORRECTING DEFECT 27 (vertices=43, convex hull=70, v0=104497) After retessellation of defect 27 (v0=104497), euler #=-3 (118386,355036,236647) : difference with theory (-3) = 0 CORRECTING DEFECT 28 (vertices=78, convex hull=97, v0=108313) After retessellation of defect 28 (v0=108313), euler #=-2 (118420,355179,236757) : difference with theory (-2) = 0 CORRECTING DEFECT 29 (vertices=21, convex hull=59, v0=110644) After retessellation of defect 29 (v0=110644), euler #=-1 (118430,355230,236799) : difference with theory (-1) = 0 CORRECTING DEFECT 30 (vertices=48, convex hull=50, v0=112093) After retessellation of defect 30 (v0=112093), euler #=0 (118443,355290,236847) : difference with theory (0) = 0 CORRECTING DEFECT 31 (vertices=6, convex hull=22, v0=115039) After retessellation of defect 31 (v0=115039), euler #=1 (118444,355299,236856) : difference with theory (1) = 0 CORRECTING DEFECT 32 (vertices=29, convex hull=70, v0=119289) After retessellation of defect 32 (v0=119289), euler #=2 (118454,355356,236904) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.22 (0.09-->11.38) (max @ vno 86072 --> 91123) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.22 (0.09-->11.38) (max @ vno 86072 --> 91123) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 122 mutations (38.7%), 193 crossovers (61.3%), 71 vertices were eliminated building final representation... 1526 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=118454, nf=236904, ne=355356, g=0) writing corrected surface to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 16.5 minutes 0 defective edges removing intersecting faces 000: 125 intersecting 001: 5 intersecting mris_fix_topology utimesec 987.729842 mris_fix_topology stimesec 0.741887 mris_fix_topology ru_maxrss 381516 mris_fix_topology ru_ixrss 0 mris_fix_topology ru_idrss 0 mris_fix_topology ru_isrss 0 mris_fix_topology ru_minflt 67301 mris_fix_topology ru_majflt 9 mris_fix_topology ru_nswap 0 mris_fix_topology ru_inblock 21144 mris_fix_topology ru_oublock 11168 mris_fix_topology ru_msgsnd 0 mris_fix_topology ru_msgrcv 0 mris_fix_topology ru_nsignals 0 mris_fix_topology ru_nvcsw 108 mris_fix_topology ru_nivcsw 2214 FSRUNTIME@ mris_fix_topology lh 0.2747 hours 1 threads #@# Fix Topology rh Tue Jul 17 19:35:53 CDT 2018 mris_fix_topology -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 assurgentMRI07112018 rh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ before topology correction, eno=-66 (nv=113518, nf=227168, ne=340752, g=34) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 9 iterations marking ambiguous vertices... 8538 ambiguous faces found in tessellation segmenting defects... 43 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 16 into 14 -merging segment 22 into 20 41 defects to be corrected 0 vertices coincident reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -9.4233 (-4.7116) -vertex loglikelihood: -6.7279 (-3.3639) -normal dot loglikelihood: -3.6354 (-3.6354) -quad curv loglikelihood: -5.8795 (-2.9398) Total Loglikelihood : -25.6660 CORRECTING DEFECT 0 (vertices=87, convex hull=68, v0=7094) After retessellation of defect 0 (v0=7094), euler #=-39 (108598,324437,215800) : difference with theory (-38) = 1 CORRECTING DEFECT 1 (vertices=40, convex hull=79, v0=14766) After retessellation of defect 1 (v0=14766), euler #=-38 (108622,324538,215878) : difference with theory (-37) = 1 CORRECTING DEFECT 2 (vertices=102, convex hull=113, v0=16680) After retessellation of defect 2 (v0=16680), euler #=-37 (108628,324620,215955) : difference with theory (-36) = 1 CORRECTING DEFECT 3 (vertices=111, convex hull=133, v0=21169) After retessellation of defect 3 (v0=21169), euler #=-36 (108689,324865,216140) : difference with theory (-35) = 1 CORRECTING DEFECT 4 (vertices=55, convex hull=75, v0=22625) After retessellation of defect 4 (v0=22625), euler #=-35 (108713,324964,216216) : difference with theory (-34) = 1 CORRECTING DEFECT 5 (vertices=29, convex hull=60, v0=24289) After retessellation of defect 5 (v0=24289), euler #=-34 (108722,325013,216257) : difference with theory (-33) = 1 CORRECTING DEFECT 6 (vertices=93, convex hull=129, v0=34818) normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces normal vector of length zero at vertex 109043 with 3 faces After retessellation of defect 6 (v0=34818), euler #=-33 (108739,325121,216349) : difference with theory (-32) = 1 CORRECTING DEFECT 7 (vertices=23, convex hull=21, v0=35076) After retessellation of defect 7 (v0=35076), euler #=-32 (108742,325138,216364) : difference with theory (-31) = 1 CORRECTING DEFECT 8 (vertices=43, convex hull=71, v0=35398) After retessellation of defect 8 (v0=35398), euler #=-31 (108774,325265,216460) : difference with theory (-30) = 1 CORRECTING DEFECT 9 (vertices=28, convex hull=73, v0=44132) After retessellation of defect 9 (v0=44132), euler #=-30 (108780,325309,216499) : difference with theory (-29) = 1 CORRECTING DEFECT 10 (vertices=44, convex hull=79, v0=48876) After retessellation of defect 10 (v0=48876), euler #=-29 (108804,325415,216582) : difference with theory (-28) = 1 CORRECTING DEFECT 11 (vertices=101, convex hull=69, v0=49477) After retessellation of defect 11 (v0=49477), euler #=-28 (108813,325468,216627) : difference with theory (-27) = 1 CORRECTING DEFECT 12 (vertices=36, convex hull=59, v0=50784) After retessellation of defect 12 (v0=50784), euler #=-27 (108823,325519,216669) : difference with theory (-26) = 1 CORRECTING DEFECT 13 (vertices=6, convex hull=35, v0=58215) After retessellation of defect 13 (v0=58215), euler #=-26 (108826,325537,216685) : difference with theory (-25) = 1 CORRECTING DEFECT 14 (vertices=1440, convex hull=462, v0=61356) L defect detected... After retessellation of defect 14 (v0=61356), euler #=-25 (109160,326784,217599) : difference with theory (-24) = 1 CORRECTING DEFECT 15 (vertices=10, convex hull=19, v0=62956) After retessellation of defect 15 (v0=62956), euler #=-24 (109161,326793,217608) : difference with theory (-23) = 1 CORRECTING DEFECT 16 (vertices=133, convex hull=76, v0=63687) After retessellation of defect 16 (v0=63687), euler #=-23 (109188,326908,217697) : difference with theory (-22) = 1 CORRECTING DEFECT 17 (vertices=6, convex hull=21, v0=64530) After retessellation of defect 17 (v0=64530), euler #=-22 (109189,326916,217705) : difference with theory (-21) = 1 CORRECTING DEFECT 18 (vertices=36, convex hull=32, v0=66506) After retessellation of defect 18 (v0=66506), euler #=-21 (109198,326951,217732) : difference with theory (-20) = 1 CORRECTING DEFECT 19 (vertices=997, convex hull=236, v0=68689) After retessellation of defect 19 (v0=68689), euler #=-19 (109215,327123,217889) : difference with theory (-19) = 0 CORRECTING DEFECT 20 (vertices=10, convex hull=24, v0=72734) After retessellation of defect 20 (v0=72734), euler #=-18 (109216,327132,217898) : difference with theory (-18) = 0 CORRECTING DEFECT 21 (vertices=6, convex hull=27, v0=79360) After retessellation of defect 21 (v0=79360), euler #=-17 (109219,327148,217912) : difference with theory (-17) = 0 CORRECTING DEFECT 22 (vertices=219, convex hull=137, v0=79530) After retessellation of defect 22 (v0=79530), euler #=-16 (109278,327391,218097) : difference with theory (-16) = 0 CORRECTING DEFECT 23 (vertices=111, convex hull=74, v0=80576) After retessellation of defect 23 (v0=80576), euler #=-15 (109287,327448,218146) : difference with theory (-15) = 0 CORRECTING DEFECT 24 (vertices=115, convex hull=60, v0=81328) After retessellation of defect 24 (v0=81328), euler #=-14 (109296,327504,218194) : difference with theory (-14) = 0 CORRECTING DEFECT 25 (vertices=43, convex hull=30, v0=83059) After retessellation of defect 25 (v0=83059), euler #=-13 (109305,327542,218224) : difference with theory (-13) = 0 CORRECTING DEFECT 26 (vertices=22, convex hull=61, v0=84756) After retessellation of defect 26 (v0=84756), euler #=-12 (109314,327596,218270) : difference with theory (-12) = 0 CORRECTING DEFECT 27 (vertices=238, convex hull=85, v0=84789) After retessellation of defect 27 (v0=84789), euler #=-11 (109360,327772,218401) : difference with theory (-11) = 0 CORRECTING DEFECT 28 (vertices=99, convex hull=63, v0=91025) After retessellation of defect 28 (v0=91025), euler #=-10 (109380,327858,218468) : difference with theory (-10) = 0 CORRECTING DEFECT 29 (vertices=15, convex hull=28, v0=95793) After retessellation of defect 29 (v0=95793), euler #=-9 (109381,327872,218482) : difference with theory (-9) = 0 CORRECTING DEFECT 30 (vertices=25, convex hull=41, v0=97948) After retessellation of defect 30 (v0=97948), euler #=-8 (109390,327915,218517) : difference with theory (-8) = 0 CORRECTING DEFECT 31 (vertices=49, convex hull=32, v0=101417) After retessellation of defect 31 (v0=101417), euler #=-7 (109398,327948,218543) : difference with theory (-7) = 0 CORRECTING DEFECT 32 (vertices=48, convex hull=43, v0=102425) After retessellation of defect 32 (v0=102425), euler #=-6 (109405,327989,218578) : difference with theory (-6) = 0 CORRECTING DEFECT 33 (vertices=109, convex hull=123, v0=102592) After retessellation of defect 33 (v0=102592), euler #=-5 (109443,328160,218712) : difference with theory (-5) = 0 CORRECTING DEFECT 34 (vertices=23, convex hull=54, v0=103960) After retessellation of defect 34 (v0=103960), euler #=-4 (109452,328210,218754) : difference with theory (-4) = 0 CORRECTING DEFECT 35 (vertices=89, convex hull=49, v0=103975) After retessellation of defect 35 (v0=103975), euler #=-3 (109472,328292,218817) : difference with theory (-3) = 0 CORRECTING DEFECT 36 (vertices=106, convex hull=108, v0=104369) After retessellation of defect 36 (v0=104369), euler #=-2 (109534,328527,218991) : difference with theory (-2) = 0 CORRECTING DEFECT 37 (vertices=81, convex hull=44, v0=106002) After retessellation of defect 37 (v0=106002), euler #=-1 (109541,328565,219023) : difference with theory (-1) = 0 CORRECTING DEFECT 38 (vertices=66, convex hull=38, v0=108814) After retessellation of defect 38 (v0=108814), euler #=0 (109550,328607,219057) : difference with theory (0) = 0 CORRECTING DEFECT 39 (vertices=22, convex hull=71, v0=110241) After retessellation of defect 39 (v0=110241), euler #=1 (109559,328658,219100) : difference with theory (1) = 0 CORRECTING DEFECT 40 (vertices=16, convex hull=31, v0=112854) After retessellation of defect 40 (v0=112854), euler #=2 (109561,328677,219118) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.24 (0.10-->7.98) (max @ vno 34397 --> 36105) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.24 (0.10-->7.98) (max @ vno 34397 --> 36105) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 131 mutations (31.8%), 281 crossovers (68.2%), 251 vertices were eliminated building final representation... 3957 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=109561, nf=219118, ne=328677, g=0) writing corrected surface to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 28.6 minutes 0 defective edges removing intersecting faces 000: 471 intersecting 001: 37 intersecting 002: 6 intersecting expanding nbhd size to 2 003: 9 intersecting 004: 5 intersecting mris_fix_topology utimesec 1716.335077 mris_fix_topology stimesec 0.707892 mris_fix_topology ru_maxrss 369980 mris_fix_topology ru_ixrss 0 mris_fix_topology ru_idrss 0 mris_fix_topology ru_isrss 0 mris_fix_topology ru_minflt 67774 mris_fix_topology ru_majflt 0 mris_fix_topology ru_nswap 0 mris_fix_topology ru_inblock 19256 mris_fix_topology ru_oublock 10376 mris_fix_topology ru_msgsnd 0 mris_fix_topology ru_msgrcv 0 mris_fix_topology ru_nsignals 0 mris_fix_topology ru_nvcsw 104 mris_fix_topology ru_nivcsw 2953 FSRUNTIME@ mris_fix_topology rh 0.4769 hours 1 threads mris_euler_number ../surf/lh.orig euler # = v-e+f = 2g-2: 118454 - 355356 + 236904 = 2 --> 0 holes F =2V-4: 236904 = 236908-4 (0) 2E=3F: 710712 = 710712 (0) total defect index = 0 mris_euler_number ../surf/rh.orig euler # = v-e+f = 2g-2: 109561 - 328677 + 219118 = 2 --> 0 holes F =2V-4: 219118 = 219122-4 (0) 2E=3F: 657354 = 657354 (0) total defect index = 0 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_remove_intersection ../surf/lh.orig ../surf/lh.orig intersection removal took 0.00 hours removing intersecting faces 000: 13 intersecting writing corrected surface to ../surf/lh.orig rm ../surf/lh.inflated /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours removing intersecting faces 000: 156 intersecting 001: 31 intersecting 002: 9 intersecting 003: 6 intersecting 004: 5 intersecting expanding nbhd size to 2 005: 5 intersecting expanding nbhd size to 3 006: 5 intersecting writing corrected surface to ../surf/rh.orig rm ../surf/rh.inflated #-------------------------------------------- #@# Make White Surf lh Tue Jul 17 20:04:40 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs assurgentMRI07112018 lh using white.preaparc as white matter name... only generating white matter surface using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/filled.mgz... reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/brain.finalsurfs.mgz... reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/../mri/aseg.presurf.mgz... reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... 14736 bright wm thresholded. 43 bright non-wm voxels segmented. reading original surface position from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.orig... computing class statistics... border white: 217244 voxels (1.29%) border gray 240415 voxels (1.43%) WM (94.0): 95.3 +- 8.5 [70.0 --> 110.0] GM (68.0) : 66.6 +- 13.1 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 49.9 (was 70) setting MAX_BORDER_WHITE to 107.5 (was 105) setting MIN_BORDER_WHITE to 63.0 (was 85) setting MAX_CSF to 36.7 (was 40) setting MAX_GRAY to 90.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 49.9 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 23.6 (was 40) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.82 +- 0.22 (0.02-->4.45) (max @ vno 86072 --> 91123) face area 0.28 +- 0.12 (0.00-->2.81) mean absolute distance = 0.87 +- 1.10 3757 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=99+-7.0, GM=63+-10.4 mean inside = 90.1, mean outside = 71.4 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 4 vertex label from ripped group removing 3 vertex label from ripped group mean border=75.4, 317 (317) missing vertices, mean dist 0.3 [0.9 (%30.9)->0.9 (%69.1))] %36 local maxima, %59 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=hhvri, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.93 +- 0.26 (0.08-->3.99) (max @ vno 118179 --> 118185) face area 0.28 +- 0.13 (0.00-->2.47) mean absolute distance = 0.43 +- 0.94 4343 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3622873.2, rms=11.804 001: dt: 0.5000, sse=2171648.8, rms=8.689 (26.387%) 002: dt: 0.5000, sse=1449929.4, rms=6.593 (24.127%) 003: dt: 0.5000, sse=1074859.4, rms=5.182 (21.398%) 004: dt: 0.5000, sse=903426.3, rms=4.319 (16.653%) 005: dt: 0.5000, sse=828436.0, rms=3.856 (10.729%) 006: dt: 0.5000, sse=789617.2, rms=3.625 (5.979%) 007: dt: 0.5000, sse=761274.9, rms=3.518 (2.956%) rms = 3.47, time step reduction 1 of 3 to 0.250... 008: dt: 0.5000, sse=762060.8, rms=3.468 (1.419%) 009: dt: 0.2500, sse=590835.2, rms=2.078 (40.070%) 010: dt: 0.2500, sse=560670.9, rms=1.728 (16.838%) 011: dt: 0.2500, sse=552354.8, rms=1.620 (6.284%) rms = 1.57, time step reduction 2 of 3 to 0.125... 012: dt: 0.2500, sse=546314.9, rms=1.572 (2.966%) 013: dt: 0.1250, sse=537745.8, rms=1.492 (5.045%) rms = 1.48, time step reduction 3 of 3 to 0.062... 014: dt: 0.1250, sse=538426.9, rms=1.485 (0.521%) positioning took 1.1 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group mean border=77.5, 264 (153) missing vertices, mean dist -0.3 [0.6 (%62.2)->0.2 (%37.8))] %40 local maxima, %54 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=hhvri, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.92 +- 0.25 (0.06-->3.94) (max @ vno 118179 --> 118185) face area 0.36 +- 0.17 (0.00-->2.78) mean absolute distance = 0.38 +- 0.65 3939 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1013307.1, rms=4.190 015: dt: 0.5000, sse=808268.9, rms=2.860 (31.741%) rms = 2.92, time step reduction 1 of 3 to 0.250... 016: dt: 0.2500, sse=729780.9, rms=2.242 (21.620%) 017: dt: 0.2500, sse=719047.1, rms=1.730 (22.808%) 018: dt: 0.2500, sse=668527.6, rms=1.486 (14.140%) 019: dt: 0.2500, sse=660792.8, rms=1.393 (6.277%) 020: dt: 0.2500, sse=660341.7, rms=1.340 (3.786%) rms = 1.32, time step reduction 2 of 3 to 0.125... 021: dt: 0.2500, sse=656150.6, rms=1.316 (1.751%) rms = 1.27, time step reduction 3 of 3 to 0.062... 022: dt: 0.1250, sse=650888.6, rms=1.268 (3.676%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... mean border=79.8, 226 (132) missing vertices, mean dist -0.2 [0.5 (%61.2)->0.2 (%38.8))] %54 local maxima, %40 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=hhvri, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.92 +- 0.25 (0.08-->3.88) (max @ vno 118179 --> 118185) face area 0.36 +- 0.16 (0.00-->2.74) mean absolute distance = 0.34 +- 0.51 3499 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=919533.8, rms=3.736 023: dt: 0.5000, sse=747092.7, rms=2.436 (34.802%) rms = 2.67, time step reduction 1 of 3 to 0.250... 024: dt: 0.2500, sse=681002.0, rms=1.769 (27.357%) 025: dt: 0.2500, sse=654905.6, rms=1.355 (23.445%) 026: dt: 0.2500, sse=646676.8, rms=1.235 (8.805%) rms = 1.21, time step reduction 2 of 3 to 0.125... 027: dt: 0.2500, sse=639818.6, rms=1.211 (1.999%) 028: dt: 0.1250, sse=635626.4, rms=1.160 (4.186%) rms = 1.15, time step reduction 3 of 3 to 0.062... 029: dt: 0.1250, sse=640684.6, rms=1.153 (0.595%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group mean border=81.2, 236 (124) missing vertices, mean dist -0.1 [0.4 (%56.9)->0.2 (%43.1))] %64 local maxima, %30 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=hhvri, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white.preaparc... writing smoothed curvature to lh.curv 000: dt: 0.0000, sse=732264.6, rms=2.405 030: dt: 0.5000, sse=701465.8, rms=1.923 (20.055%) rms = 2.37, time step reduction 1 of 3 to 0.250... 031: dt: 0.2500, sse=638175.6, rms=1.249 (35.027%) 032: dt: 0.2500, sse=632759.4, rms=1.030 (17.526%) 033: dt: 0.2500, sse=617961.9, rms=0.966 (6.251%) rms = 0.99, time step reduction 2 of 3 to 0.125... rms = 0.95, time step reduction 3 of 3 to 0.062... 034: dt: 0.1250, sse=614449.9, rms=0.946 (2.084%) positioning took 0.5 minutes generating cortex label... 14 non-cortical segments detected only using segment with 8087 vertices erasing segment 1 (vno[0] = 66122) erasing segment 2 (vno[0] = 82003) erasing segment 3 (vno[0] = 82026) erasing segment 4 (vno[0] = 85157) erasing segment 5 (vno[0] = 86935) erasing segment 6 (vno[0] = 86938) erasing segment 7 (vno[0] = 87776) erasing segment 8 (vno[0] = 88530) erasing segment 9 (vno[0] = 88540) erasing segment 10 (vno[0] = 91124) erasing segment 11 (vno[0] = 92589) erasing segment 12 (vno[0] = 100398) erasing segment 13 (vno[0] = 101057) writing cortex label to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.cortex.label... writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.curv writing smoothed area to lh.area writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.area vertex spacing 0.91 +- 0.25 (0.02-->3.86) (max @ vno 118179 --> 118185) face area 0.35 +- 0.16 (0.00-->2.89) refinement took 4.0 minutes #-------------------------------------------- #@# Make White Surf rh Tue Jul 17 20:08:41 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs assurgentMRI07112018 rh using white.preaparc as white matter name... only generating white matter surface using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/filled.mgz... reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/brain.finalsurfs.mgz... reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/../mri/aseg.presurf.mgz... reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... 14736 bright wm thresholded. 43 bright non-wm voxels segmented. reading original surface position from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.orig... computing class statistics... border white: 217244 voxels (1.29%) border gray 240415 voxels (1.43%) WM (94.0): 95.3 +- 8.5 [70.0 --> 110.0] GM (68.0) : 66.6 +- 13.1 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 45.9 (was 70) setting MAX_BORDER_WHITE to 107.5 (was 105) setting MIN_BORDER_WHITE to 59.0 (was 85) setting MAX_CSF to 32.7 (was 40) setting MAX_GRAY to 90.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 45.9 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 19.6 (was 40) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.82 +- 0.22 (0.01-->3.73) (max @ vno 82599 --> 82600) face area 0.28 +- 0.13 (0.00-->3.53) mean absolute distance = 0.93 +- 1.20 3630 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=99+-7.0, GM=59+-15.7 mean inside = 89.3, mean outside = 69.9 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... mean border=73.9, 429 (429) missing vertices, mean dist 0.3 [1.0 (%29.9)->0.9 (%70.1))] %33 local maxima, %61 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=hhvri, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.94 +- 0.28 (0.13-->3.92) (max @ vno 82599 --> 82600) face area 0.28 +- 0.14 (0.00-->3.45) mean absolute distance = 0.48 +- 1.07 4763 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3984698.5, rms=12.991 001: dt: 0.5000, sse=2452145.2, rms=9.874 (23.989%) 002: dt: 0.5000, sse=1708259.4, rms=7.852 (20.480%) 003: dt: 0.5000, sse=1290805.5, rms=6.441 (17.973%) 004: dt: 0.5000, sse=1062437.1, rms=5.514 (14.387%) 005: dt: 0.5000, sse=945219.8, rms=4.955 (10.143%) 006: dt: 0.5000, sse=880484.1, rms=4.629 (6.566%) 007: dt: 0.5000, sse=851708.3, rms=4.465 (3.542%) 008: dt: 0.5000, sse=833282.6, rms=4.363 (2.289%) 009: dt: 0.5000, sse=823527.6, rms=4.305 (1.337%) rms = 4.26, time step reduction 1 of 3 to 0.250... 010: dt: 0.5000, sse=817285.6, rms=4.258 (1.085%) 011: dt: 0.2500, sse=633781.7, rms=2.991 (29.750%) 012: dt: 0.2500, sse=598093.4, rms=2.674 (10.615%) 013: dt: 0.2500, sse=588366.1, rms=2.576 (3.673%) 014: dt: 0.2500, sse=583775.9, rms=2.524 (2.020%) rms = 2.48, time step reduction 2 of 3 to 0.125... 015: dt: 0.2500, sse=579900.2, rms=2.485 (1.539%) 016: dt: 0.1250, sse=569965.2, rms=2.396 (3.570%) rms = 2.38, time step reduction 3 of 3 to 0.062... 017: dt: 0.1250, sse=570139.6, rms=2.382 (0.577%) positioning took 1.2 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group removing 4 vertex label from ripped group removing 4 vertex label from ripped group removing 1 vertex label from ripped group mean border=75.9, 463 (233) missing vertices, mean dist -0.3 [0.6 (%59.8)->0.3 (%40.2))] %35 local maxima, %59 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=hhvri, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.93 +- 0.27 (0.05-->3.97) (max @ vno 82599 --> 82600) face area 0.36 +- 0.18 (0.00-->4.42) mean absolute distance = 0.44 +- 0.77 3979 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1067384.8, rms=4.845 018: dt: 0.5000, sse=874158.7, rms=3.779 (21.999%) rms = 3.92, time step reduction 1 of 3 to 0.250... 019: dt: 0.2500, sse=793464.1, rms=3.223 (14.729%) 020: dt: 0.2500, sse=743245.7, rms=2.826 (12.312%) 021: dt: 0.2500, sse=721022.9, rms=2.630 (6.917%) 022: dt: 0.2500, sse=710746.2, rms=2.520 (4.205%) 023: dt: 0.2500, sse=703505.8, rms=2.438 (3.256%) 024: dt: 0.2500, sse=696606.3, rms=2.379 (2.390%) rms = 2.34, time step reduction 2 of 3 to 0.125... 025: dt: 0.2500, sse=692082.2, rms=2.338 (1.731%) 026: dt: 0.1250, sse=684743.8, rms=2.274 (2.741%) rms = 2.26, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=683217.5, rms=2.255 (0.833%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group removing 3 vertex label from ripped group removing 2 vertex label from ripped group removing 1 vertex label from ripped group mean border=78.0, 435 (187) missing vertices, mean dist -0.2 [0.6 (%56.9)->0.2 (%43.1))] %47 local maxima, %47 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=hhvri, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.92 +- 0.26 (0.05-->4.01) (max @ vno 108963 --> 108974) face area 0.36 +- 0.17 (0.00-->4.22) mean absolute distance = 0.39 +- 0.60 3492 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=971788.7, rms=4.409 028: dt: 0.5000, sse=802998.1, rms=3.307 (24.987%) rms = 3.51, time step reduction 1 of 3 to 0.250... 029: dt: 0.2500, sse=731095.0, rms=2.792 (15.571%) 030: dt: 0.2500, sse=696086.4, rms=2.445 (12.436%) 031: dt: 0.2500, sse=681704.5, rms=2.327 (4.828%) rms = 2.28, time step reduction 2 of 3 to 0.125... 032: dt: 0.2500, sse=683281.3, rms=2.281 (1.978%) 033: dt: 0.1250, sse=671877.3, rms=2.224 (2.487%) rms = 2.21, time step reduction 3 of 3 to 0.062... 034: dt: 0.1250, sse=672701.9, rms=2.213 (0.484%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 2 vertex label from ripped group removing 1 vertex label from ripped group removing 3 vertex label from ripped group mean border=79.5, 477 (173) missing vertices, mean dist -0.2 [0.5 (%55.5)->0.3 (%44.5))] %58 local maxima, %36 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=hhvri, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white.preaparc... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=800950.8, rms=3.393 035: dt: 0.5000, sse=733440.0, rms=2.833 (16.505%) rms = 3.23, time step reduction 1 of 3 to 0.250... 036: dt: 0.2500, sse=674189.4, rms=2.357 (16.786%) 037: dt: 0.2500, sse=667250.3, rms=2.206 (6.417%) 038: dt: 0.2500, sse=674026.6, rms=2.147 (2.678%) rms = 2.15, time step reduction 2 of 3 to 0.125... 039: dt: 0.2500, sse=654397.5, rms=2.147 (0.014%) rms = 2.10, time step reduction 3 of 3 to 0.062... 040: dt: 0.1250, sse=649179.0, rms=2.101 (2.125%) positioning took 0.5 minutes generating cortex label... 13 non-cortical segments detected only using segment with 7088 vertices erasing segment 0 (vno[0] = 20310) erasing segment 1 (vno[0] = 23882) erasing segment 2 (vno[0] = 26458) erasing segment 4 (vno[0] = 36594) erasing segment 5 (vno[0] = 37370) erasing segment 6 (vno[0] = 44657) erasing segment 7 (vno[0] = 47870) erasing segment 8 (vno[0] = 48998) erasing segment 9 (vno[0] = 56384) erasing segment 10 (vno[0] = 63665) erasing segment 11 (vno[0] = 80622) erasing segment 12 (vno[0] = 83127) writing cortex label to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.cortex.label... writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.curv writing smoothed area to rh.area writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.area vertex spacing 0.92 +- 0.26 (0.02-->4.15) (max @ vno 108886 --> 108933) face area 0.35 +- 0.17 (0.00-->4.26) refinement took 4.1 minutes #-------------------------------------------- #@# Smooth2 lh Tue Jul 17 20:12:46 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Smooth2 rh Tue Jul 17 20:12:50 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 lh Tue Jul 17 20:12:54 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_inflate -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mris_inflate.lh.dat ../surf/lh.smoothwm ../surf/lh.inflated Reading ../surf/lh.smoothwm avg radius = 46.5 mm, total surface area = 74627 mm^2 writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc step 000: RMS=0.178 (target=0.015) step 005: RMS=0.124 (target=0.015) step 010: RMS=0.092 (target=0.015) step 015: RMS=0.076 (target=0.015) step 020: RMS=0.062 (target=0.015) step 025: RMS=0.052 (target=0.015) step 030: RMS=0.044 (target=0.015) step 035: RMS=0.039 (target=0.015) step 040: RMS=0.034 (target=0.015) step 045: RMS=0.031 (target=0.015) step 050: RMS=0.028 (target=0.015) step 055: RMS=0.027 (target=0.015) step 060: RMS=0.026 (target=0.015) inflation complete. inflation took 0.4 minutes mris_inflate utimesec 25.831073 mris_inflate stimesec 0.052991 mris_inflate ru_maxrss 152336 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 19856 mris_inflate ru_majflt 1 mris_inflate ru_nswap 0 mris_inflate ru_inblock 8488 mris_inflate ru_oublock 9264 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 68 mris_inflate ru_nivcsw 172 #-------------------------------------------- #@# Inflation2 rh Tue Jul 17 20:13:20 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_inflate -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mris_inflate.rh.dat ../surf/rh.smoothwm ../surf/rh.inflated Reading ../surf/rh.smoothwm avg radius = 44.7 mm, total surface area = 69334 mm^2 writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc step 000: RMS=0.179 (target=0.015) step 005: RMS=0.127 (target=0.015) step 010: RMS=0.096 (target=0.015) step 015: RMS=0.079 (target=0.015) step 020: RMS=0.067 (target=0.015) step 025: RMS=0.057 (target=0.015) step 030: RMS=0.048 (target=0.015) step 035: RMS=0.041 (target=0.015) step 040: RMS=0.037 (target=0.015) step 045: RMS=0.034 (target=0.015) step 050: RMS=0.032 (target=0.015) step 055: RMS=0.030 (target=0.015) step 060: RMS=0.029 (target=0.015) inflation complete. inflation took 0.4 minutes mris_inflate utimesec 23.985353 mris_inflate stimesec 0.062990 mris_inflate ru_maxrss 141460 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 18669 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 7712 mris_inflate ru_oublock 8568 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 49 mris_inflate ru_nivcsw 169 #-------------------------------------------- #@# Curv .H and .K lh Tue Jul 17 20:13:44 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_curvature -w lh.white.preaparc total integrated curvature = 18.811*4pi (236.385) --> -18 handles ICI = 152.7, FI = 1480.3, variation=23433.817 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 133 vertices thresholded to be in k1 ~ [-1.41 0.68], k2 ~ [-0.25 0.29] total integrated curvature = 0.504*4pi (6.337) --> 0 handles ICI = 1.4, FI = 7.7, variation=138.321 112 vertices thresholded to be in [-0.15 0.02] writing Gaussian curvature to ./lh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.003 101 vertices thresholded to be in [-0.47 0.24] done. writing mean curvature to ./lh.inflated.H...curvature mean = -0.017, std = 0.023 done. #-------------------------------------------- #@# Curv .H and .K rh Tue Jul 17 20:14:46 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_curvature -w rh.white.preaparc total integrated curvature = 30.864*4pi (387.851) --> -30 handles ICI = 156.3, FI = 1422.8, variation=22644.346 writing Gaussian curvature to ./rh.white.preaparc.K...done. writing mean curvature to ./rh.white.preaparc.H...done. rm -f rh.white.H ln -s rh.white.preaparc.H rh.white.H rm -f rh.white.K ln -s rh.white.preaparc.K rh.white.K mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 123 vertices thresholded to be in k1 ~ [-3.36 0.39], k2 ~ [-0.32 0.14] total integrated curvature = 0.573*4pi (7.200) --> 0 handles ICI = 1.3, FI = 8.9, variation=146.581 120 vertices thresholded to be in [-0.03 0.67] writing Gaussian curvature to ./rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.001, std = 0.011 112 vertices thresholded to be in [-1.23 0.17] done. writing mean curvature to ./rh.inflated.H...curvature mean = -0.019, std = 0.040 done. #----------------------------------------- #@# Curvature Stats lh Tue Jul 17 20:15:43 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm assurgentMRI07112018 lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ assurgentMRI07112018/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 247 ] Gb_filter = 0 WARN: S lookup min: -0.247703 WARN: S explicit min: 0.000000 vertex = 212 #----------------------------------------- #@# Curvature Stats rh Tue Jul 17 20:15:46 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm assurgentMRI07112018 rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ assurgentMRI07112018/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 213 ] Gb_filter = 0 WARN: S lookup min: -0.287628 WARN: S explicit min: 0.000000 vertex = 568 #-------------------------------------------- #@# Sphere lh Tue Jul 17 20:15:49 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_sphere -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mris_sphere.lh.dat -seed 1234 ../surf/lh.inflated ../surf/lh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.296... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=hhvri, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %20.23 pass 1: epoch 2 of 3 starting distance error %20.22 unfolding complete - removing small folds... starting distance error %20.14 removing remaining folds... final distance error %20.16 MRISunfold() return, current seed 1234 -01: dt=0.0000, 72 negative triangles 248: dt=0.9900, 72 negative triangles 249: dt=0.9900, 42 negative triangles 250: dt=0.9900, 27 negative triangles 251: dt=0.9900, 23 negative triangles 252: dt=0.9900, 27 negative triangles 253: dt=0.9900, 13 negative triangles 254: dt=0.9900, 15 negative triangles 255: dt=0.9900, 17 negative triangles 256: dt=0.9900, 12 negative triangles 257: dt=0.9900, 8 negative triangles 258: dt=0.9900, 9 negative triangles 259: dt=0.9900, 4 negative triangles 260: dt=0.9900, 2 negative triangles 261: dt=0.9900, 4 negative triangles 262: dt=0.9900, 2 negative triangles writing spherical brain to ../surf/lh.sphere spherical transformation took 0.66 hours mris_sphere utimesec 2364.041611 mris_sphere stimesec 0.935857 mris_sphere ru_maxrss 209608 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 34181 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 0 mris_sphere ru_oublock 8336 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 77 mris_sphere ru_nivcsw 3682 FSRUNTIME@ mris_sphere 0.6568 hours 1 threads #-------------------------------------------- #@# Sphere rh Tue Jul 17 20:55:14 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_sphere -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.305... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=hhvri, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %20.83 pass 1: epoch 2 of 3 starting distance error %20.73 unfolding complete - removing small folds... starting distance error %20.49 removing remaining folds... final distance error %20.52 MRISunfold() return, current seed 1234 -01: dt=0.0000, 112 negative triangles 233: dt=0.9900, 112 negative triangles 234: dt=0.9900, 64 negative triangles 235: dt=0.9900, 71 negative triangles 236: dt=0.9900, 57 negative triangles 237: dt=0.9900, 57 negative triangles 238: dt=0.9900, 50 negative triangles 239: dt=0.9900, 49 negative triangles 240: dt=0.9900, 50 negative triangles 241: dt=0.9900, 43 negative triangles 242: dt=0.9900, 45 negative triangles 243: dt=0.9900, 40 negative triangles 244: dt=0.9900, 43 negative triangles 245: dt=0.9900, 31 negative triangles 246: dt=0.9900, 29 negative triangles 247: dt=0.9900, 18 negative triangles 248: dt=0.9900, 21 negative triangles 249: dt=0.9900, 18 negative triangles 250: dt=0.9900, 14 negative triangles 251: dt=0.9900, 8 negative triangles 252: dt=0.9900, 14 negative triangles 253: dt=0.9900, 10 negative triangles 254: dt=0.9900, 9 negative triangles 255: dt=0.9900, 4 negative triangles 256: dt=0.9900, 3 negative triangles 257: dt=0.9900, 4 negative triangles 258: dt=0.9900, 4 negative triangles 259: dt=0.9900, 1 negative triangles writing spherical brain to ../surf/rh.sphere spherical transformation took 0.57 hours mris_sphere utimesec 2056.736328 mris_sphere stimesec 0.815875 mris_sphere ru_maxrss 194400 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 31933 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 0 mris_sphere ru_oublock 7712 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 79 mris_sphere ru_nivcsw 3665 FSRUNTIME@ mris_sphere 0.5715 hours 1 threads #-------------------------------------------- #@# Surf Reg lh Tue Jul 17 21:29:31 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_register -curv -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /xnat/apps/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment cwd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts cmdline mris_register -curv -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /xnat/apps/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading surface from ../surf/lh.sphere... reading template parameterization from /xnat/apps/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=hhvri, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=hhvri, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc curvature mean = 0.000, std = 5.578 curvature mean = 0.048, std = 0.817 curvature mean = 0.010, std = 0.881 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (16.00, 0.00, 16.00) sse = 208017.3, tmin=0.7513 d=32.00 min @ (-8.00, 0.00, 0.00) sse = 196849.2, tmin=1.5193 d=16.00 min @ (4.00, 0.00, -4.00) sse = 163115.6, tmin=2.2940 d=8.00 min @ (0.00, 2.00, 0.00) sse = 159136.4, tmin=3.0848 d=4.00 min @ (0.00, -1.00, 1.00) sse = 155305.2, tmin=3.8796 d=1.00 min @ (0.00, 0.25, 0.00) sse = 155165.1, tmin=5.4867 tol=1.0e+00, sigma=0.5, host=hhvri, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 6.30 min curvature mean = 0.027, std = 0.847 curvature mean = 0.004, std = 0.956 curvature mean = 0.026, std = 0.859 curvature mean = 0.001, std = 0.983 curvature mean = 0.026, std = 0.863 curvature mean = -0.000, std = 0.994 2 Reading smoothwm curvature mean = -0.029, std = 0.287 curvature mean = 0.045, std = 0.249 curvature mean = 0.051, std = 0.374 curvature mean = 0.042, std = 0.308 curvature mean = 0.034, std = 0.552 curvature mean = 0.041, std = 0.334 curvature mean = 0.020, std = 0.682 curvature mean = 0.041, std = 0.345 curvature mean = 0.007, std = 0.779 MRISregister() return, current seed 0 -01: dt=0.0000, 84 negative triangles 105: dt=0.9900, 84 negative triangles expanding nbhd size to 1 106: dt=0.9900, 106 negative triangles 107: dt=0.9900, 76 negative triangles 108: dt=0.9900, 72 negative triangles 109: dt=0.9900, 81 negative triangles 110: dt=0.9900, 77 negative triangles 111: dt=0.9900, 68 negative triangles 112: dt=0.9900, 66 negative triangles 113: dt=0.9900, 74 negative triangles 114: dt=0.9900, 56 negative triangles 115: dt=0.9900, 56 negative triangles 116: dt=0.9900, 50 negative triangles 117: dt=0.9900, 52 negative triangles 118: dt=0.9900, 50 negative triangles 119: dt=0.9900, 46 negative triangles 120: dt=0.9900, 48 negative triangles 121: dt=0.9900, 41 negative triangles 122: dt=0.9900, 41 negative triangles 123: dt=0.9900, 36 negative triangles 124: dt=0.9900, 36 negative triangles 125: dt=0.9900, 37 negative triangles 126: dt=0.9900, 36 negative triangles 127: dt=0.9900, 36 negative triangles 128: dt=0.9900, 33 negative triangles 129: dt=0.9900, 37 negative triangles 130: dt=0.9900, 32 negative triangles 131: dt=0.9900, 32 negative triangles 132: dt=0.9900, 32 negative triangles 133: dt=0.9900, 27 negative triangles 134: dt=0.9900, 27 negative triangles 135: dt=0.9900, 26 negative triangles 136: dt=0.9900, 25 negative triangles 137: dt=0.9900, 20 negative triangles 138: dt=0.9900, 23 negative triangles 139: dt=0.9900, 17 negative triangles 140: dt=0.9900, 17 negative triangles 141: dt=0.9900, 17 negative triangles 142: dt=0.9900, 13 negative triangles 143: dt=0.9900, 14 negative triangles 144: dt=0.9900, 8 negative triangles 145: dt=0.9900, 12 negative triangles 146: dt=0.9900, 5 negative triangles 147: dt=0.9900, 8 negative triangles 148: dt=0.9900, 7 negative triangles 149: dt=0.9900, 4 negative triangles 150: dt=0.9900, 3 negative triangles 151: dt=0.9900, 2 negative triangles 152: dt=0.9900, 1 negative triangles 153: dt=0.9900, 3 negative triangles 154: dt=0.9900, 3 negative triangles 155: dt=0.9900, 1 negative triangles 156: dt=0.9900, 1 negative triangles 157: dt=0.9900, 1 negative triangles 158: dt=0.9900, 2 negative triangles writing registered surface to ../surf/lh.sphere.reg... registration took 0.50 hours mris_register utimesec 1801.359151 mris_register stimesec 1.139826 mris_register ru_maxrss 205576 mris_register ru_ixrss 0 mris_register ru_idrss 0 mris_register ru_isrss 0 mris_register ru_minflt 31228 mris_register ru_majflt 10 mris_register ru_nswap 0 mris_register ru_inblock 15640 mris_register ru_oublock 8336 mris_register ru_msgsnd 0 mris_register ru_msgrcv 0 mris_register ru_nsignals 0 mris_register ru_nvcsw 121 mris_register ru_nivcsw 3214 FSRUNTIME@ mris_register 0.5008 hours 1 threads #-------------------------------------------- #@# Surf Reg rh Tue Jul 17 21:59:34 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_register -curv -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /xnat/apps/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment cwd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts cmdline mris_register -curv -rusage /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /xnat/apps/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading surface from ../surf/rh.sphere... reading template parameterization from /xnat/apps/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=hhvri, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=hhvri, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc curvature mean = -0.000, std = 5.551 curvature mean = 0.044, std = 0.803 curvature mean = 0.009, std = 0.882 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (16.00, 0.00, 16.00) sse = 244593.3, tmin=0.6953 d=32.00 min @ (-8.00, 0.00, 8.00) sse = 217075.4, tmin=1.4233 d=16.00 min @ (4.00, 0.00, -4.00) sse = 195679.4, tmin=2.1457 d=8.00 min @ (-2.00, 0.00, 2.00) sse = 193075.3, tmin=2.8752 d=4.00 min @ (1.00, 1.00, -1.00) sse = 190363.3, tmin=3.6186 d=2.00 min @ (0.00, -0.50, 0.00) sse = 190094.0, tmin=4.3581 d=1.00 min @ (-0.25, 0.00, 0.25) sse = 190085.6, tmin=5.0957 d=0.50 min @ (0.12, 0.12, -0.12) sse = 190018.5, tmin=5.8273 tol=1.0e+00, sigma=0.5, host=hhvri, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 5.83 min curvature mean = 0.019, std = 0.833 curvature mean = 0.003, std = 0.955 curvature mean = 0.017, std = 0.844 curvature mean = 0.001, std = 0.982 curvature mean = 0.016, std = 0.847 curvature mean = 0.000, std = 0.993 2 Reading smoothwm curvature mean = -0.027, std = 0.280 curvature mean = 0.038, std = 0.241 curvature mean = 0.042, std = 0.389 curvature mean = 0.035, std = 0.301 curvature mean = 0.027, std = 0.567 curvature mean = 0.034, std = 0.328 curvature mean = 0.014, std = 0.696 curvature mean = 0.034, std = 0.339 curvature mean = 0.004, std = 0.794 MRISregister() return, current seed 0 -01: dt=0.0000, 80 negative triangles 129: dt=0.9900, 80 negative triangles 130: dt=0.9405, 111 negative triangles expanding nbhd size to 1 131: dt=0.9900, 85 negative triangles 132: dt=0.9900, 73 negative triangles 133: dt=0.9900, 65 negative triangles 134: dt=0.9900, 70 negative triangles 135: dt=0.9900, 66 negative triangles 136: dt=0.9900, 68 negative triangles 137: dt=0.9900, 57 negative triangles 138: dt=0.9900, 59 negative triangles 139: dt=0.9900, 47 negative triangles 140: dt=0.9900, 41 negative triangles 141: dt=0.9900, 42 negative triangles 142: dt=0.9900, 35 negative triangles 143: dt=0.9900, 30 negative triangles 144: dt=0.9900, 32 negative triangles 145: dt=0.9900, 29 negative triangles 146: dt=0.9900, 22 negative triangles 147: dt=0.9900, 21 negative triangles 148: dt=0.9900, 20 negative triangles 149: dt=0.9900, 19 negative triangles 150: dt=0.9900, 20 negative triangles 151: dt=0.9900, 14 negative triangles 152: dt=0.9900, 14 negative triangles 153: dt=0.9900, 15 negative triangles 154: dt=0.9900, 14 negative triangles 155: dt=0.9900, 13 negative triangles 156: dt=0.9900, 13 negative triangles 157: dt=0.9900, 11 negative triangles 158: dt=0.9900, 11 negative triangles 159: dt=0.9900, 9 negative triangles 160: dt=0.9900, 9 negative triangles 161: dt=0.9900, 9 negative triangles 162: dt=0.9900, 8 negative triangles 163: dt=0.9900, 8 negative triangles 164: dt=0.9900, 8 negative triangles 165: dt=0.9900, 8 negative triangles 166: dt=0.9900, 6 negative triangles 167: dt=0.9900, 4 negative triangles 168: dt=0.9900, 4 negative triangles 169: dt=0.9900, 3 negative triangles 170: dt=0.9900, 3 negative triangles 171: dt=0.9900, 3 negative triangles 172: dt=0.9900, 3 negative triangles 173: dt=0.9900, 2 negative triangles 174: dt=0.9900, 3 negative triangles 175: dt=0.9900, 2 negative triangles 176: dt=0.9900, 2 negative triangles 177: dt=0.9900, 1 negative triangles 178: dt=0.9900, 1 negative triangles 179: dt=0.9900, 1 negative triangles 180: dt=0.9900, 1 negative triangles 181: dt=0.9900, 1 negative triangles 182: dt=0.9900, 1 negative triangles 183: dt=0.9900, 1 negative triangles 184: dt=0.9900, 1 negative triangles 185: dt=0.9900, 1 negative triangles 186: dt=0.9900, 1 negative triangles writing registered surface to ../surf/rh.sphere.reg... registration took 0.65 hours mris_register utimesec 2341.840986 mris_register stimesec 1.296802 mris_register ru_maxrss 193708 mris_register ru_ixrss 0 mris_register ru_idrss 0 mris_register ru_isrss 0 mris_register ru_minflt 29304 mris_register ru_majflt 0 mris_register ru_nswap 0 mris_register ru_inblock 13344 mris_register ru_oublock 7712 mris_register ru_msgsnd 0 mris_register ru_msgrcv 0 mris_register ru_nsignals 0 mris_register ru_nvcsw 105 mris_register ru_nivcsw 3863 FSRUNTIME@ mris_register 0.6509 hours 1 threads #-------------------------------------------- #@# Jacobian white lh Tue Jul 17 22:38:37 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white.preaparc... writing curvature file ../surf/lh.jacobian_white #-------------------------------------------- #@# Jacobian white rh Tue Jul 17 22:38:39 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white.preaparc... writing curvature file ../surf/rh.jacobian_white #-------------------------------------------- #@# AvgCurv lh Tue Jul 17 22:38:41 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mrisp_paint -a 5 /xnat/apps/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /xnat/apps/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/lh.avg_curv... #-------------------------------------------- #@# AvgCurv rh Tue Jul 17 22:38:42 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mrisp_paint -a 5 /xnat/apps/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /xnat/apps/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/rh.avg_curv... #----------------------------------------- #@# Cortical Parc lh Tue Jul 17 22:38:44 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 assurgentMRI07112018 lh ../surf/lh.sphere.reg /xnat/apps/freesurfer/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /xnat/apps/freesurfer/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.8 using min determinant for regularization = 0.006 0 singular and 342 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1168 labels changed using aseg relabeling using gibbs priors... 000: 2798 changed, 118454 examined... 001: 651 changed, 11749 examined... 002: 161 changed, 3736 examined... 003: 53 changed, 994 examined... 004: 15 changed, 322 examined... 005: 3 changed, 91 examined... 006: 1 changed, 15 examined... 007: 1 changed, 7 examined... 008: 0 changed, 4 examined... 185 labels changed using aseg 000: 114 total segments, 69 labels (282 vertices) changed 001: 45 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 2 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1625 vertices marked for relabeling... 1625 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 13 seconds. #----------------------------------------- #@# Cortical Parc rh Tue Jul 17 22:38:57 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 assurgentMRI07112018 rh ../surf/rh.sphere.reg /xnat/apps/freesurfer/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /xnat/apps/freesurfer/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.004 0 singular and 309 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 888 labels changed using aseg relabeling using gibbs priors... 000: 2440 changed, 109561 examined... 001: 599 changed, 10486 examined... 002: 157 changed, 3313 examined... 003: 48 changed, 944 examined... 004: 19 changed, 282 examined... 005: 7 changed, 114 examined... 006: 4 changed, 39 examined... 007: 4 changed, 26 examined... 008: 1 changed, 28 examined... 009: 0 changed, 5 examined... 210 labels changed using aseg 000: 96 total segments, 45 labels (273 vertices) changed 001: 50 total segments, 10 labels (26 vertices) changed 002: 40 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 3 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 2111 vertices marked for relabeling... 2111 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 11 seconds. #-------------------------------------------- #@# Make Pial Surf lh Tue Jul 17 22:39:07 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs assurgentMRI07112018 lh using white.preaparc starting white location... using white.preaparc starting pial locations... using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/filled.mgz... reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/brain.finalsurfs.mgz... reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/../mri/aseg.presurf.mgz... reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... 14736 bright wm thresholded. 43 bright non-wm voxels segmented. reading original surface position from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.orig... computing class statistics... border white: 217244 voxels (1.29%) border gray 240415 voxels (1.43%) WM (94.0): 95.3 +- 8.5 [70.0 --> 110.0] GM (68.0) : 66.6 +- 13.1 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 49.9 (was 70) setting MAX_BORDER_WHITE to 107.5 (was 105) setting MIN_BORDER_WHITE to 63.0 (was 85) setting MAX_CSF to 36.7 (was 40) setting MAX_GRAY to 90.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 49.9 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 23.6 (was 40) using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=99+-7.0, GM=63+-10.4 mean inside = 90.1, mean outside = 71.4 smoothing surface for 5 iterations... reading initial white vertex positions from white.preaparc... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.91 +- 0.25 (0.02-->3.86) (max @ vno 118179 --> 118185) face area 0.35 +- 0.16 (0.00-->2.86) mean absolute distance = 0.68 +- 1.10 3365 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group deleting segment 3 with 164 points - only 0.00% unknown deleting segment 4 with 132 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 5 with 1 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 6 with 1 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 7 with 1 points - only 0.00% unknown deleting segment 8 with 6 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 9 with 2 points - only 0.00% unknown mean border=75.6, 326 (324) missing vertices, mean dist 0.2 [1.2 (%18.4)->0.6 (%81.6))] %35 local maxima, %60 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=hhvri, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.93 +- 0.26 (0.09-->3.91) (max @ vno 118179 --> 118185) face area 0.35 +- 0.17 (0.00-->3.13) mean absolute distance = 0.44 +- 0.97 4383 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1900157.8, rms=7.633 001: dt: 0.5000, sse=1169788.4, rms=5.049 (33.854%) 002: dt: 0.5000, sse=946815.8, rms=3.914 (22.484%) 003: dt: 0.5000, sse=883197.6, rms=3.576 (8.622%) 004: dt: 0.5000, sse=846817.7, rms=3.327 (6.953%) rms = 3.37, time step reduction 1 of 3 to 0.250... 005: dt: 0.2500, sse=712335.8, rms=2.316 (30.389%) 006: dt: 0.2500, sse=675395.9, rms=1.771 (23.534%) 007: dt: 0.2500, sse=653650.4, rms=1.601 (9.603%) 008: dt: 0.2500, sse=652225.8, rms=1.540 (3.787%) rms = 1.51, time step reduction 2 of 3 to 0.125... 009: dt: 0.2500, sse=659028.9, rms=1.508 (2.105%) 010: dt: 0.1250, sse=644430.2, rms=1.453 (3.631%) rms = 1.44, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=643388.7, rms=1.445 (0.575%) positioning took 0.9 minutes inhibiting deformation at non-cortical midline structures... deleting segment 1 with 18 points - only 0.00% unknown deleting segment 2 with 90 points - only 0.00% unknown deleting segment 3 with 87 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 4 with 3 points - only 0.00% unknown mean border=77.5, 216 (135) missing vertices, mean dist -0.2 [0.6 (%57.4)->0.2 (%42.6))] %40 local maxima, %55 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=hhvri, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.93 +- 0.26 (0.05-->3.87) (max @ vno 118179 --> 118185) face area 0.36 +- 0.17 (0.00-->2.87) mean absolute distance = 0.39 +- 0.67 4155 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=947599.1, rms=3.792 012: dt: 0.5000, sse=788682.0, rms=2.639 (30.401%) rms = 2.70, time step reduction 1 of 3 to 0.250... 013: dt: 0.2500, sse=722055.0, rms=2.077 (21.312%) 014: dt: 0.2500, sse=693993.5, rms=1.624 (21.796%) 015: dt: 0.2500, sse=679986.9, rms=1.423 (12.361%) 016: dt: 0.2500, sse=663130.8, rms=1.339 (5.965%) rms = 1.30, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=661458.1, rms=1.302 (2.696%) rms = 1.26, time step reduction 3 of 3 to 0.062... 018: dt: 0.1250, sse=657339.3, rms=1.257 (3.478%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group deleting segment 1 with 120 points - only 0.00% unknown deleting segment 2 with 88 points - only 0.00% unknown deleting segment 3 with 13 points - only 0.00% unknown mean border=79.8, 217 (120) missing vertices, mean dist -0.2 [0.5 (%61.1)->0.2 (%38.9))] %54 local maxima, %40 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=hhvri, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.92 +- 0.26 (0.07-->4.13) (max @ vno 73343 --> 72232) face area 0.36 +- 0.17 (0.00-->2.81) mean absolute distance = 0.34 +- 0.52 3705 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=934295.6, rms=3.786 019: dt: 0.5000, sse=754410.1, rms=2.477 (34.573%) rms = 2.65, time step reduction 1 of 3 to 0.250... 020: dt: 0.2500, sse=687298.2, rms=1.829 (26.179%) 021: dt: 0.2500, sse=671575.5, rms=1.392 (23.854%) 022: dt: 0.2500, sse=654091.9, rms=1.252 (10.083%) rms = 1.22, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=657169.9, rms=1.220 (2.550%) 024: dt: 0.1250, sse=644812.9, rms=1.165 (4.486%) rms = 1.16, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=641708.9, rms=1.161 (0.380%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 102 points - only 0.00% unknown deleting segment 1 with 84 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 2 with 4 points - only 0.00% unknown mean border=81.2, 223 (112) missing vertices, mean dist -0.1 [0.4 (%57.0)->0.2 (%43.0))] %65 local maxima, %30 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=hhvri, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white... writing smoothed curvature to lh.curv 000: dt: 0.0000, sse=734593.5, rms=2.424 026: dt: 0.5000, sse=693214.1, rms=1.917 (20.906%) rms = 2.36, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=639084.8, rms=1.253 (34.667%) 028: dt: 0.2500, sse=633547.5, rms=1.034 (17.464%) 029: dt: 0.2500, sse=640154.4, rms=0.972 (6.009%) rms = 0.99, time step reduction 2 of 3 to 0.125... rms = 0.95, time step reduction 3 of 3 to 0.062... 030: dt: 0.1250, sse=624730.2, rms=0.951 (2.123%) positioning took 0.5 minutes generating cortex label... 9 non-cortical segments detected only using segment with 8063 vertices erasing segment 1 (vno[0] = 66099) erasing segment 2 (vno[0] = 67120) erasing segment 3 (vno[0] = 82003) erasing segment 4 (vno[0] = 85157) erasing segment 5 (vno[0] = 86935) erasing segment 6 (vno[0] = 86938) erasing segment 7 (vno[0] = 86943) erasing segment 8 (vno[0] = 100398) writing cortex label to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.cortex.label... writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.curv writing smoothed area to lh.area writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.area vertex spacing 0.91 +- 0.26 (0.02-->4.15) (max @ vno 72232 --> 73343) face area 0.35 +- 0.17 (0.00-->2.91) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 3 with 18 points - only 0.00% unknown smoothing surface for 5 iterations... reading initial pial vertex positions from white.preaparc... mean border=47.8, 244 (244) missing vertices, mean dist 1.8 [0.0 (%0.0)->2.2 (%100.0))] %15 local maxima, %65 large gradients and %15 min vals, 155 gradients ignored perforing initial smooth deformation to move away from white surface tol=1.0e-04, sigma=2.0, host=hhvri, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=26319226.0, rms=33.881 001: dt: 0.0500, sse=23583778.0, rms=32.030 (5.465%) 002: dt: 0.0500, sse=21559962.0, rms=30.587 (4.503%) 003: dt: 0.0500, sse=19964634.0, rms=29.400 (3.880%) 004: dt: 0.0500, sse=18635556.0, rms=28.374 (3.492%) 005: dt: 0.0500, sse=17486442.0, rms=27.455 (3.238%) 006: dt: 0.0500, sse=16465674.0, rms=26.612 (3.070%) 007: dt: 0.0500, sse=15541164.0, rms=25.825 (2.957%) 008: dt: 0.0500, sse=14693834.0, rms=25.082 (2.877%) 009: dt: 0.0500, sse=13908435.0, rms=24.373 (2.827%) 010: dt: 0.0500, sse=13175751.0, rms=23.692 (2.793%) positioning took 0.7 minutes mean border=47.7, 146 (114) missing vertices, mean dist 1.4 [0.1 (%0.0)->1.6 (%100.0))] %16 local maxima, %65 large gradients and %14 min vals, 143 gradients ignored tol=1.0e-04, sigma=2.0, host=hhvri, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=13762324.0, rms=24.229 011: dt: 0.0500, sse=13073518.0, rms=23.586 (2.652%) 012: dt: 0.0500, sse=12426255.0, rms=22.966 (2.630%) 013: dt: 0.0500, sse=11817248.0, rms=22.367 (2.610%) 014: dt: 0.0500, sse=11244515.0, rms=21.788 (2.588%) 015: dt: 0.0500, sse=10706501.0, rms=21.230 (2.562%) 016: dt: 0.0500, sse=10202109.0, rms=20.693 (2.530%) 017: dt: 0.0500, sse=9730164.0, rms=20.177 (2.491%) 018: dt: 0.0500, sse=9290073.0, rms=19.684 (2.443%) 019: dt: 0.0500, sse=8878893.0, rms=19.212 (2.398%) 020: dt: 0.0500, sse=8496015.0, rms=18.762 (2.344%) positioning took 0.7 minutes mean border=47.4, 143 (86) missing vertices, mean dist 1.1 [0.1 (%2.1)->1.3 (%97.9))] %16 local maxima, %65 large gradients and %14 min vals, 148 gradients ignored tol=1.0e-04, sigma=2.0, host=hhvri, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=8600458.0, rms=18.888 021: dt: 0.0500, sse=8217752.0, rms=18.430 (2.425%) 022: dt: 0.0500, sse=7861960.5, rms=17.994 (2.367%) 023: dt: 0.0500, sse=7523636.0, rms=17.569 (2.362%) 024: dt: 0.0500, sse=7212022.0, rms=17.168 (2.282%) 025: dt: 0.0500, sse=6925402.5, rms=16.791 (2.197%) 026: dt: 0.0500, sse=6660382.0, rms=16.434 (2.124%) 027: dt: 0.0500, sse=6412137.0, rms=16.093 (2.077%) 028: dt: 0.0500, sse=6174527.5, rms=15.759 (2.074%) 029: dt: 0.0500, sse=5946809.5, rms=15.433 (2.073%) 030: dt: 0.0500, sse=5728713.5, rms=15.113 (2.071%) positioning took 0.7 minutes mean border=47.4, 156 (70) missing vertices, mean dist 0.8 [0.1 (%21.7)->1.3 (%78.3))] %16 local maxima, %66 large gradients and %13 min vals, 128 gradients ignored tol=1.0e-04, sigma=2.0, host=hhvri, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=5818975.0, rms=15.241 031: dt: 0.5000, sse=4343843.0, rms=12.903 (15.342%) 032: dt: 0.5000, sse=3375152.0, rms=11.089 (14.058%) 033: dt: 0.5000, sse=2698159.8, rms=9.634 (13.119%) 034: dt: 0.5000, sse=2238369.0, rms=8.488 (11.900%) 035: dt: 0.5000, sse=1942990.0, rms=7.673 (9.593%) 036: dt: 0.5000, sse=1751596.2, rms=7.081 (7.723%) 037: dt: 0.5000, sse=1621666.4, rms=6.663 (5.900%) 038: dt: 0.5000, sse=1533800.5, rms=6.347 (4.744%) 039: dt: 0.5000, sse=1469719.8, rms=6.123 (3.526%) 040: dt: 0.5000, sse=1422886.0, rms=5.937 (3.041%) 041: dt: 0.5000, sse=1392775.2, rms=5.829 (1.824%) 042: dt: 0.5000, sse=1368988.5, rms=5.724 (1.789%) 043: dt: 0.5000, sse=1352438.0, rms=5.667 (0.997%) 044: dt: 0.5000, sse=1340983.5, rms=5.610 (1.015%) rms = 5.58, time step reduction 1 of 3 to 0.250... 045: dt: 0.5000, sse=1331221.2, rms=5.580 (0.523%) 046: dt: 0.2500, sse=1175103.0, rms=4.852 (13.046%) 047: dt: 0.2500, sse=1136897.1, rms=4.672 (3.719%) rms = 4.67, time step reduction 2 of 3 to 0.125... 048: dt: 0.2500, sse=1137229.5, rms=4.668 (0.081%) 049: dt: 0.1250, sse=1120035.0, rms=4.580 (1.889%) rms = 4.58, time step reduction 3 of 3 to 0.062... 050: dt: 0.1250, sse=1119527.5, rms=4.577 (0.074%) positioning took 1.6 minutes mean border=46.3, 827 (23) missing vertices, mean dist 0.2 [0.1 (%51.1)->0.6 (%48.9))] %29 local maxima, %54 large gradients and %11 min vals, 101 gradients ignored tol=1.0e-04, sigma=1.0, host=hhvri, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1305856.6, rms=4.906 051: dt: 0.5000, sse=1211640.0, rms=4.461 (9.070%) rms = 4.69, time step reduction 1 of 3 to 0.250... 052: dt: 0.2500, sse=1105357.4, rms=3.863 (13.394%) 053: dt: 0.2500, sse=1059334.2, rms=3.584 (7.230%) 054: dt: 0.2500, sse=1039774.2, rms=3.460 (3.456%) 055: dt: 0.2500, sse=1027484.5, rms=3.384 (2.209%) 056: dt: 0.2500, sse=1019323.1, rms=3.332 (1.535%) rms = 3.30, time step reduction 2 of 3 to 0.125... 057: dt: 0.2500, sse=1013622.4, rms=3.296 (1.079%) 058: dt: 0.1250, sse=999307.2, rms=3.192 (3.166%) rms = 3.17, time step reduction 3 of 3 to 0.062... 059: dt: 0.1250, sse=996366.0, rms=3.172 (0.614%) positioning took 0.8 minutes mean border=45.1, 942 (16) missing vertices, mean dist 0.2 [0.1 (%53.9)->0.5 (%46.1))] %43 local maxima, %41 large gradients and %10 min vals, 100 gradients ignored tol=1.0e-04, sigma=0.5, host=hhvri, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1103312.6, rms=3.817 rms = 3.81, time step reduction 1 of 3 to 0.250... 060: dt: 0.5000, sse=1102847.2, rms=3.813 (0.102%) 061: dt: 0.2500, sse=1004219.8, rms=3.194 (16.225%) 062: dt: 0.2500, sse=985289.7, rms=3.062 (4.144%) rms = 3.03, time step reduction 2 of 3 to 0.125... 063: dt: 0.2500, sse=980810.6, rms=3.032 (0.992%) 064: dt: 0.1250, sse=963963.6, rms=2.899 (4.376%) rms = 2.88, time step reduction 3 of 3 to 0.062... 065: dt: 0.1250, sse=961553.5, rms=2.882 (0.596%) positioning took 0.5 minutes mean border=43.8, 1493 (14) missing vertices, mean dist 0.1 [0.1 (%51.0)->0.4 (%49.0))] %51 local maxima, %32 large gradients and %10 min vals, 116 gradients ignored tol=1.0e-04, sigma=0.2, host=hhvri, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.pial... writing smoothed curvature to lh.curv.pial 000: dt: 0.0000, sse=1033016.9, rms=3.346 rms = 3.56, time step reduction 1 of 3 to 0.250... 066: dt: 0.2500, sse=990831.4, rms=3.042 (9.093%) 067: dt: 0.2500, sse=967801.6, rms=2.866 (5.795%) 068: dt: 0.2500, sse=960006.4, rms=2.812 (1.885%) rms = 2.78, time step reduction 2 of 3 to 0.125... 069: dt: 0.2500, sse=954626.4, rms=2.777 (1.239%) rms = 2.73, time step reduction 3 of 3 to 0.062... 070: dt: 0.1250, sse=949098.6, rms=2.728 (1.756%) positioning took 0.5 minutes writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.curv.pial writing smoothed area to lh.area.pial writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.area.pial vertex spacing 1.01 +- 0.41 (0.04-->8.62) (max @ vno 88577 --> 87834) face area 0.41 +- 0.30 (0.00-->5.35) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 118454 vertices processed 25000 of 118454 vertices processed 50000 of 118454 vertices processed 75000 of 118454 vertices processed 100000 of 118454 vertices processed 0 of 118454 vertices processed 25000 of 118454 vertices processed 50000 of 118454 vertices processed 75000 of 118454 vertices processed 100000 of 118454 vertices processed thickness calculation complete, 88:516 truncations. 43540 vertices at 0 distance 98130 vertices at 1 distance 57639 vertices at 2 distance 17825 vertices at 3 distance 5145 vertices at 4 distance 1509 vertices at 5 distance 453 vertices at 6 distance 172 vertices at 7 distance 70 vertices at 8 distance 46 vertices at 9 distance 29 vertices at 10 distance 16 vertices at 11 distance 18 vertices at 12 distance 14 vertices at 13 distance 12 vertices at 14 distance 6 vertices at 15 distance 5 vertices at 16 distance 1 vertices at 17 distance 1 vertices at 18 distance 0 vertices at 19 distance 5 vertices at 20 distance writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.thickness positioning took 11.0 minutes #-------------------------------------------- #@# Make Pial Surf rh Tue Jul 17 22:50:08 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs assurgentMRI07112018 rh using white.preaparc starting white location... using white.preaparc starting pial locations... using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/filled.mgz... reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/brain.finalsurfs.mgz... reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/../mri/aseg.presurf.mgz... reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... 14736 bright wm thresholded. 43 bright non-wm voxels segmented. reading original surface position from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.orig... computing class statistics... border white: 217244 voxels (1.29%) border gray 240415 voxels (1.43%) WM (94.0): 95.3 +- 8.5 [70.0 --> 110.0] GM (68.0) : 66.6 +- 13.1 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 45.9 (was 70) setting MAX_BORDER_WHITE to 107.5 (was 105) setting MIN_BORDER_WHITE to 59.0 (was 85) setting MAX_CSF to 32.7 (was 40) setting MAX_GRAY to 90.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 45.9 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 19.6 (was 40) using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=99+-7.0, GM=59+-15.7 mean inside = 89.3, mean outside = 69.9 smoothing surface for 5 iterations... reading initial white vertex positions from white.preaparc... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.92 +- 0.26 (0.02-->4.15) (max @ vno 108886 --> 108933) face area 0.35 +- 0.17 (0.00-->4.20) mean absolute distance = 0.70 +- 1.18 3448 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 0 with 27 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 1 with 2 points - only 0.00% unknown deleting segment 4 with 39 points - only 0.00% unknown deleting segment 5 with 11 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 6 with 3 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 7 with 1 points - only 0.00% unknown mean border=74.3, 475 (472) missing vertices, mean dist 0.2 [1.2 (%22.4)->0.6 (%77.6))] %31 local maxima, %63 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=hhvri, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.94 +- 0.28 (0.09-->4.23) (max @ vno 108886 --> 108933) face area 0.35 +- 0.18 (0.00-->3.85) mean absolute distance = 0.47 +- 1.06 4690 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1816092.1, rms=7.826 001: dt: 0.5000, sse=1224202.9, rms=5.709 (27.054%) 002: dt: 0.5000, sse=1017642.3, rms=4.745 (16.887%) 003: dt: 0.5000, sse=961566.4, rms=4.395 (7.367%) 004: dt: 0.5000, sse=890191.2, rms=4.071 (7.384%) rms = 4.03, time step reduction 1 of 3 to 0.250... 005: dt: 0.5000, sse=887502.3, rms=4.032 (0.942%) 006: dt: 0.2500, sse=698390.2, rms=2.608 (35.324%) 007: dt: 0.2500, sse=667789.2, rms=2.302 (11.747%) 008: dt: 0.2500, sse=659390.3, rms=2.202 (4.323%) 009: dt: 0.2500, sse=663495.0, rms=2.150 (2.360%) rms = 2.13, time step reduction 2 of 3 to 0.125... 010: dt: 0.2500, sse=656368.4, rms=2.125 (1.150%) 011: dt: 0.1250, sse=647618.7, rms=2.047 (3.691%) rms = 2.04, time step reduction 3 of 3 to 0.062... 012: dt: 0.1250, sse=648417.7, rms=2.037 (0.491%) positioning took 0.8 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 45 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 2 with 25 points - only 0.00% unknown mean border=75.8, 406 (212) missing vertices, mean dist -0.3 [0.7 (%53.5)->0.2 (%46.5))] %34 local maxima, %60 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=hhvri, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.93 +- 0.27 (0.06-->4.43) (max @ vno 108886 --> 108933) face area 0.37 +- 0.18 (0.00-->3.96) mean absolute distance = 0.44 +- 0.77 4125 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=933850.6, rms=4.087 013: dt: 0.5000, sse=797266.4, rms=3.216 (21.306%) rms = 3.41, time step reduction 1 of 3 to 0.250... 014: dt: 0.2500, sse=731219.1, rms=2.684 (16.552%) 015: dt: 0.2500, sse=694974.5, rms=2.319 (13.571%) 016: dt: 0.2500, sse=680389.2, rms=2.170 (6.454%) 017: dt: 0.2500, sse=673132.7, rms=2.077 (4.255%) rms = 2.03, time step reduction 2 of 3 to 0.125... 018: dt: 0.2500, sse=671366.9, rms=2.030 (2.301%) 019: dt: 0.1250, sse=663458.1, rms=1.966 (3.112%) rms = 1.94, time step reduction 3 of 3 to 0.062... 020: dt: 0.1250, sse=669247.2, rms=1.943 (1.199%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 58 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 2 with 49 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 4 with 7 points - only 0.00% unknown mean border=78.0, 411 (176) missing vertices, mean dist -0.2 [0.6 (%56.8)->0.2 (%43.2))] %47 local maxima, %47 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=hhvri, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.92 +- 0.27 (0.07-->4.43) (max @ vno 108886 --> 108933) face area 0.36 +- 0.18 (0.00-->3.90) mean absolute distance = 0.39 +- 0.60 3487 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=960235.4, rms=4.268 021: dt: 0.5000, sse=779127.1, rms=3.092 (27.567%) rms = 3.26, time step reduction 1 of 3 to 0.250... 022: dt: 0.2500, sse=707046.5, rms=2.530 (18.154%) 023: dt: 0.2500, sse=670499.6, rms=2.115 (16.406%) 024: dt: 0.2500, sse=653756.1, rms=1.963 (7.187%) 025: dt: 0.2500, sse=650779.5, rms=1.898 (3.330%) rms = 1.88, time step reduction 2 of 3 to 0.125... 026: dt: 0.2500, sse=648414.4, rms=1.878 (1.059%) 027: dt: 0.1250, sse=644047.2, rms=1.824 (2.837%) rms = 1.82, time step reduction 3 of 3 to 0.062... 028: dt: 0.1250, sse=649276.4, rms=1.820 (0.226%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 64 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 2 with 9 points - only 0.00% unknown removing 3 vertex label from ripped group mean border=79.5, 446 (155) missing vertices, mean dist -0.2 [0.5 (%55.6)->0.3 (%44.4))] %58 local maxima, %36 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=hhvri, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=772276.5, rms=3.118 029: dt: 0.5000, sse=702395.7, rms=2.516 (19.311%) rms = 2.97, time step reduction 1 of 3 to 0.250... 030: dt: 0.2500, sse=644735.6, rms=1.972 (21.606%) 031: dt: 0.2500, sse=631987.6, rms=1.797 (8.884%) 032: dt: 0.2500, sse=624876.6, rms=1.744 (2.967%) rms = 1.75, time step reduction 2 of 3 to 0.125... rms = 1.73, time step reduction 3 of 3 to 0.062... 033: dt: 0.1250, sse=623834.0, rms=1.727 (0.948%) positioning took 0.4 minutes generating cortex label... 10 non-cortical segments detected only using segment with 7018 vertices erasing segment 0 (vno[0] = 20310) erasing segment 1 (vno[0] = 33050) erasing segment 2 (vno[0] = 33938) erasing segment 4 (vno[0] = 47870) erasing segment 5 (vno[0] = 48998) erasing segment 6 (vno[0] = 55293) erasing segment 7 (vno[0] = 65132) erasing segment 8 (vno[0] = 80622) erasing segment 9 (vno[0] = 83127) writing cortex label to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.cortex.label... writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.curv writing smoothed area to rh.area writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.area vertex spacing 0.92 +- 0.27 (0.02-->4.43) (max @ vno 57372 --> 58452) face area 0.36 +- 0.18 (0.00-->3.79) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 0 with 67 points - only 0.00% unknown smoothing surface for 5 iterations... reading initial pial vertex positions from white.preaparc... mean border=44.3, 391 (391) missing vertices, mean dist 1.8 [2.7 (%0.2)->2.1 (%99.8))] %11 local maxima, %70 large gradients and %14 min vals, 131 gradients ignored perforing initial smooth deformation to move away from white surface tol=1.0e-04, sigma=2.0, host=hhvri, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=26956114.0, rms=35.777 001: dt: 0.0500, sse=24157306.0, rms=33.828 (5.449%) 002: dt: 0.0500, sse=22078922.0, rms=32.304 (4.505%) 003: dt: 0.0500, sse=20427946.0, rms=31.040 (3.913%) 004: dt: 0.0500, sse=19048778.0, rms=29.943 (3.534%) 005: dt: 0.0500, sse=17854146.0, rms=28.960 (3.285%) 006: dt: 0.0500, sse=16791822.0, rms=28.056 (3.121%) 007: dt: 0.0500, sse=15830237.0, rms=27.212 (3.008%) 008: dt: 0.0500, sse=14947896.0, rms=26.414 (2.933%) 009: dt: 0.0500, sse=14131720.0, rms=25.653 (2.879%) 010: dt: 0.0500, sse=13371269.0, rms=24.924 (2.844%) positioning took 0.6 minutes mean border=44.2, 250 (200) missing vertices, mean dist 1.3 [1.6 (%0.2)->1.5 (%99.8))] %11 local maxima, %70 large gradients and %13 min vals, 110 gradients ignored tol=1.0e-04, sigma=2.0, host=hhvri, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=13883019.0, rms=25.398 011: dt: 0.0500, sse=13168264.0, rms=24.708 (2.720%) 012: dt: 0.0500, sse=12498488.0, rms=24.042 (2.694%) 013: dt: 0.0500, sse=11870430.0, rms=23.401 (2.668%) 014: dt: 0.0500, sse=11281504.0, rms=22.783 (2.640%) 015: dt: 0.0500, sse=10730794.0, rms=22.189 (2.605%) 016: dt: 0.0500, sse=10216674.0, rms=21.621 (2.563%) 017: dt: 0.0500, sse=9738049.0, rms=21.077 (2.513%) 018: dt: 0.0500, sse=9294505.0, rms=20.561 (2.450%) 019: dt: 0.0500, sse=8881442.0, rms=20.068 (2.398%) 020: dt: 0.0500, sse=8497677.0, rms=19.598 (2.338%) positioning took 0.7 minutes mean border=43.8, 288 (169) missing vertices, mean dist 1.0 [0.2 (%2.9)->1.2 (%97.1))] %11 local maxima, %71 large gradients and %12 min vals, 92 gradients ignored tol=1.0e-04, sigma=2.0, host=hhvri, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=8608654.0, rms=19.738 021: dt: 0.0500, sse=8220004.0, rms=19.254 (2.449%) 022: dt: 0.0500, sse=7859164.5, rms=18.794 (2.389%) 023: dt: 0.0500, sse=7513843.5, rms=18.343 (2.400%) 024: dt: 0.0500, sse=7196322.5, rms=17.918 (2.316%) 025: dt: 0.0500, sse=6904553.0, rms=17.519 (2.229%) 026: dt: 0.0500, sse=6634568.5, rms=17.141 (2.158%) 027: dt: 0.0500, sse=6380789.5, rms=16.778 (2.119%) 028: dt: 0.0500, sse=6135881.0, rms=16.419 (2.135%) 029: dt: 0.0500, sse=5899705.0, rms=16.066 (2.150%) 030: dt: 0.0500, sse=5672172.0, rms=15.719 (2.164%) positioning took 0.7 minutes mean border=43.9, 333 (155) missing vertices, mean dist 0.8 [0.1 (%26.0)->1.2 (%74.0))] %11 local maxima, %71 large gradients and %12 min vals, 85 gradients ignored tol=1.0e-04, sigma=2.0, host=hhvri, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=5762411.0, rms=15.850 031: dt: 0.5000, sse=4211958.5, rms=13.273 (16.259%) 032: dt: 0.5000, sse=3161287.8, rms=11.179 (15.773%) 033: dt: 0.5000, sse=2448494.5, rms=9.515 (14.890%) 034: dt: 0.5000, sse=1995901.5, rms=8.267 (13.110%) 035: dt: 0.5000, sse=1739191.1, rms=7.482 (9.496%) 036: dt: 0.5000, sse=1595255.1, rms=6.986 (6.632%) 037: dt: 0.5000, sse=1509532.4, rms=6.688 (4.265%) 038: dt: 0.5000, sse=1453635.9, rms=6.468 (3.288%) 039: dt: 0.5000, sse=1413634.6, rms=6.324 (2.225%) 040: dt: 0.5000, sse=1385975.1, rms=6.203 (1.912%) 041: dt: 0.5000, sse=1366214.5, rms=6.134 (1.119%) 042: dt: 0.5000, sse=1350428.5, rms=6.058 (1.241%) rms = 6.03, time step reduction 1 of 3 to 0.250... 043: dt: 0.5000, sse=1341659.1, rms=6.032 (0.428%) 044: dt: 0.2500, sse=1173399.1, rms=5.256 (12.873%) 045: dt: 0.2500, sse=1131515.4, rms=5.058 (3.767%) rms = 5.04, time step reduction 2 of 3 to 0.125... 046: dt: 0.2500, sse=1128469.5, rms=5.037 (0.397%) 047: dt: 0.1250, sse=1108457.2, rms=4.934 (2.053%) rms = 4.92, time step reduction 3 of 3 to 0.062... 048: dt: 0.1250, sse=1106401.9, rms=4.923 (0.222%) positioning took 1.4 minutes mean border=43.3, 1074 (72) missing vertices, mean dist 0.2 [0.1 (%54.9)->0.6 (%45.1))] %19 local maxima, %64 large gradients and %10 min vals, 91 gradients ignored tol=1.0e-04, sigma=1.0, host=hhvri, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1221805.6, rms=4.992 049: dt: 0.5000, sse=1184075.1, rms=4.818 (3.480%) rms = 5.31, time step reduction 1 of 3 to 0.250... 050: dt: 0.2500, sse=1090856.8, rms=4.296 (10.838%) 051: dt: 0.2500, sse=1057147.1, rms=4.099 (4.602%) 052: dt: 0.2500, sse=1042757.4, rms=4.014 (2.071%) rms = 3.96, time step reduction 2 of 3 to 0.125... 053: dt: 0.2500, sse=1034071.1, rms=3.964 (1.246%) 054: dt: 0.1250, sse=1020528.3, rms=3.874 (2.267%) rms = 3.85, time step reduction 3 of 3 to 0.062... 055: dt: 0.1250, sse=1017034.6, rms=3.852 (0.550%) positioning took 0.6 minutes mean border=42.5, 1211 (54) missing vertices, mean dist 0.2 [0.1 (%60.9)->0.6 (%39.1))] %31 local maxima, %53 large gradients and %10 min vals, 73 gradients ignored tol=1.0e-04, sigma=0.5, host=hhvri, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1093630.0, rms=4.303 rms = 4.36, time step reduction 1 of 3 to 0.250... 056: dt: 0.2500, sse=1057532.2, rms=4.092 (4.893%) 057: dt: 0.2500, sse=1032260.7, rms=3.943 (3.641%) 058: dt: 0.2500, sse=1020494.4, rms=3.875 (1.715%) rms = 3.83, time step reduction 2 of 3 to 0.125... 059: dt: 0.2500, sse=1012372.5, rms=3.829 (1.189%) 060: dt: 0.1250, sse=1004144.8, rms=3.774 (1.456%) rms = 3.76, time step reduction 3 of 3 to 0.062... 061: dt: 0.1250, sse=1001391.7, rms=3.758 (0.427%) positioning took 0.5 minutes mean border=41.3, 1875 (50) missing vertices, mean dist 0.2 [0.1 (%52.6)->0.5 (%47.4))] %40 local maxima, %44 large gradients and % 9 min vals, 73 gradients ignored tol=1.0e-04, sigma=0.2, host=hhvri, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=1064055.2, rms=4.117 rms = 4.27, time step reduction 1 of 3 to 0.250... 062: dt: 0.2500, sse=1021625.2, rms=3.853 (6.420%) 063: dt: 0.2500, sse=996060.5, rms=3.688 (4.262%) 064: dt: 0.2500, sse=985526.0, rms=3.625 (1.722%) rms = 3.58, time step reduction 2 of 3 to 0.125... 065: dt: 0.2500, sse=977425.7, rms=3.577 (1.329%) rms = 3.53, time step reduction 3 of 3 to 0.062... 066: dt: 0.1250, sse=971324.4, rms=3.532 (1.255%) positioning took 0.5 minutes writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.area.pial vertex spacing 1.01 +- 0.41 (0.05-->6.32) (max @ vno 58008 --> 58007) face area 0.41 +- 0.30 (0.00-->6.60) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 109561 vertices processed 25000 of 109561 vertices processed 50000 of 109561 vertices processed 75000 of 109561 vertices processed 100000 of 109561 vertices processed 0 of 109561 vertices processed 25000 of 109561 vertices processed 50000 of 109561 vertices processed 75000 of 109561 vertices processed 100000 of 109561 vertices processed thickness calculation complete, 17:135 truncations. 49044 vertices at 0 distance 92744 vertices at 1 distance 46608 vertices at 2 distance 13023 vertices at 3 distance 3741 vertices at 4 distance 1169 vertices at 5 distance 413 vertices at 6 distance 168 vertices at 7 distance 61 vertices at 8 distance 38 vertices at 9 distance 16 vertices at 10 distance 23 vertices at 11 distance 4 vertices at 12 distance 4 vertices at 13 distance 6 vertices at 14 distance 4 vertices at 15 distance 2 vertices at 16 distance 0 vertices at 17 distance 3 vertices at 18 distance 1 vertices at 19 distance 4 vertices at 20 distance writing curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.thickness positioning took 10.1 minutes #-------------------------------------------- #@# Surf Volume lh Tue Jul 17 23:00:15 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume assurgentMRI07112018 lh /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.volume masking with /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.cortex.label Total face volume 176672 Total vertex volume 172967 (mask=0) #@# assurgentMRI07112018 lh 172967 vertexvol Done #-------------------------------------------- #@# Surf Volume rh Tue Jul 17 23:00:19 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume assurgentMRI07112018 rh /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.volume masking with /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.cortex.label Total face volume 149562 Total vertex volume 147804 (mask=0) #@# assurgentMRI07112018 rh 147804 vertexvol Done #-------------------------------------------- #@# Cortical ribbon mask Tue Jul 17 23:00:22 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon assurgentMRI07112018 SUBJECTS_DIR is /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 loading input data... computing distance to left white surface computing distance to left pial surface computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 90 writing volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/ribbon.mgz mris_volmask took 6.17 minutes writing ribbon files #----------------------------------------- #@# Parcellation Stats lh Tue Jul 17 23:06:32 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab assurgentMRI07112018 lh white computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white... reading input pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.pial... reading input white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 176672 Total vertex volume 172967 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 1231 847 1831 2.191 0.471 0.081 0.014 4 0.7 bankssts 739 467 1209 2.543 0.737 0.141 0.032 14 0.8 caudalanteriorcingulate 2893 2096 5065 2.258 0.559 0.122 0.026 26 3.2 caudalmiddlefrontal 1977 1326 2136 1.608 0.399 0.137 0.027 25 2.2 cuneus 688 484 1121 1.693 0.756 0.134 0.047 11 1.4 entorhinal 3809 2680 5774 2.047 0.651 0.154 0.033 63 6.0 fusiform 6150 4445 9791 2.029 0.518 0.129 0.026 79 6.7 inferiorparietal 4328 3023 7894 2.103 0.799 0.142 0.036 68 7.0 inferiortemporal 1549 1114 2543 1.999 0.815 0.147 0.040 27 2.7 isthmuscingulate 5791 4021 9425 2.128 0.589 0.152 0.031 81 7.6 lateraloccipital 3440 2371 6052 2.335 0.825 0.145 0.042 50 6.5 lateralorbitofrontal 3863 2756 5824 1.997 0.688 0.145 0.028 55 4.6 lingual 2493 1792 3696 2.007 0.623 0.155 0.040 55 4.6 medialorbitofrontal 3915 2826 7258 2.110 0.682 0.137 0.032 60 5.8 middletemporal 968 619 1511 2.171 0.834 0.115 0.035 21 1.3 parahippocampal 1882 1257 2790 2.164 0.560 0.115 0.019 15 1.6 paracentral 2081 1476 3619 2.236 0.546 0.126 0.028 22 2.2 parsopercularis 781 622 2087 2.735 0.802 0.164 0.038 11 1.1 parsorbitalis 1766 1225 2781 2.081 0.561 0.138 0.041 22 3.3 parstriangularis 1890 1299 1761 1.505 0.349 0.123 0.024 19 1.7 pericalcarine 5930 3933 7616 1.767 0.575 0.113 0.024 59 5.8 postcentral 1599 1139 2774 2.245 0.872 0.145 0.033 28 2.2 posteriorcingulate 6968 4635 10245 2.124 0.546 0.110 0.024 52 6.4 precentral 5659 3916 8251 2.036 0.594 0.130 0.027 59 6.1 precuneus 847 533 1307 2.344 0.967 0.112 0.023 8 0.9 rostralanteriorcingulate 7029 5034 11335 1.979 0.598 0.146 0.042 106 13.7 rostralmiddlefrontal 9295 6550 15676 2.185 0.548 0.130 0.029 105 11.4 superiorfrontal 6566 4499 8329 1.747 0.439 0.125 0.023 73 6.2 superiorparietal 4632 3269 7818 2.077 0.668 0.115 0.023 46 4.5 superiortemporal 5088 3676 8282 2.153 0.578 0.141 0.032 64 7.1 supramarginal 313 283 895 2.269 0.556 0.218 0.056 10 0.9 frontalpole 530 392 1249 2.164 0.838 0.146 0.050 11 1.0 temporalpole 530 313 741 2.206 0.470 0.096 0.019 4 0.4 transversetemporal 2662 1813 4249 2.298 0.854 0.089 0.025 21 2.3 insula mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab assurgentMRI07112018 lh pial computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.pial... reading input pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.pial... reading input white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 176672 Total vertex volume 172967 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 1231 818 1831 2.191 0.471 0.090 0.019 7 0.9 bankssts 739 515 1209 2.543 0.737 0.128 0.027 11 0.6 caudalanteriorcingulate 2893 2349 5065 2.258 0.559 0.124 0.023 33 3.0 caudalmiddlefrontal 1977 1467 2136 1.608 0.399 0.130 0.024 21 2.0 cuneus 688 740 1121 1.693 0.756 0.169 0.035 7 1.1 entorhinal 3809 3081 5774 2.047 0.651 0.154 0.038 62 6.8 fusiform 6150 5241 9791 2.029 0.518 0.142 0.026 65 6.6 inferiorparietal 4328 4138 7894 2.103 0.799 0.162 0.036 60 7.0 inferiortemporal 1549 1331 2543 1.999 0.815 0.151 0.040 26 2.5 isthmuscingulate 5791 4921 9425 2.128 0.589 0.143 0.032 68 8.0 lateraloccipital 3440 2731 6052 2.335 0.825 0.145 0.034 40 5.3 lateralorbitofrontal 3863 3331 5824 1.997 0.688 0.143 0.033 49 5.8 lingual 2493 2059 3696 2.007 0.623 0.151 0.032 41 3.2 medialorbitofrontal 3915 4022 7258 2.110 0.682 0.163 0.031 47 5.7 middletemporal 968 829 1511 2.171 0.834 0.170 0.068 43 2.4 parahippocampal 1882 1348 2790 2.164 0.560 0.105 0.018 16 1.4 paracentral 2081 1714 3619 2.236 0.546 0.136 0.027 23 2.3 parsopercularis 781 901 2087 2.735 0.802 0.198 0.041 11 1.5 parsorbitalis 1766 1478 2781 2.081 0.561 0.148 0.034 22 2.9 parstriangularis 1890 1141 1761 1.505 0.349 0.105 0.023 25 1.7 pericalcarine 5930 4647 7616 1.767 0.575 0.117 0.020 43 5.1 postcentral 1599 1266 2774 2.245 0.872 0.146 0.035 28 2.5 posteriorcingulate 6968 5020 10245 2.124 0.546 0.106 0.024 87 6.3 precentral 5659 4174 8251 2.036 0.594 0.133 0.027 73 6.5 precuneus 847 627 1307 2.344 0.967 0.152 0.035 14 1.4 rostralanteriorcingulate 7029 6390 11335 1.979 0.598 0.167 0.038 90 13.1 rostralmiddlefrontal 9295 7766 15676 2.185 0.548 0.141 0.027 92 11.2 superiorfrontal 6566 5204 8329 1.747 0.439 0.133 0.022 63 6.0 superiorparietal 4632 3989 7818 2.077 0.668 0.129 0.025 40 5.2 superiortemporal 5088 4112 8282 2.153 0.578 0.144 0.029 58 6.9 supramarginal 313 496 895 2.269 0.556 0.274 0.052 6 0.8 frontalpole 530 782 1249 2.164 0.838 0.221 0.039 8 0.9 temporalpole 530 364 741 2.206 0.470 0.084 0.017 2 0.3 transversetemporal 2662 1769 4249 2.298 0.854 0.108 0.026 39 2.4 insula #----------------------------------------- #@# Parcellation Stats rh Tue Jul 17 23:07:30 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab assurgentMRI07112018 rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white... reading input pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.pial... reading input white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 149562 Total vertex volume 147804 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 1040 702 1496 2.113 0.623 0.113 0.020 9 0.9 bankssts 782 587 1408 2.406 0.804 0.133 0.029 14 1.1 caudalanteriorcingulate 2445 1692 3719 2.140 0.568 0.120 0.027 21 2.6 caudalmiddlefrontal 2564 1705 3170 1.837 0.444 0.159 0.036 41 4.0 cuneus 1111 769 1189 1.459 0.552 0.146 0.073 27 3.1 entorhinal 2769 1957 3539 1.766 0.514 0.153 0.042 49 5.2 fusiform 5321 3773 7584 1.888 0.485 0.129 0.027 58 6.2 inferiorparietal 3102 2281 4678 1.793 0.657 0.167 0.045 62 6.7 inferiortemporal 1136 798 1689 1.787 0.803 0.143 0.035 21 1.4 isthmuscingulate 5846 4079 8254 1.918 0.483 0.152 0.032 87 8.1 lateraloccipital 3127 2290 5613 2.186 0.832 0.150 0.048 51 7.2 lateralorbitofrontal 3971 2855 5597 1.800 0.610 0.154 0.035 56 6.1 lingual 2076 1496 3527 1.994 0.628 0.141 0.039 43 4.2 medialorbitofrontal 3416 2460 5011 1.789 0.556 0.141 0.034 55 4.9 middletemporal 991 653 1278 1.700 0.659 0.123 0.027 18 1.2 parahippocampal 2123 1404 3128 2.021 0.565 0.117 0.022 17 2.0 paracentral 1916 1290 2487 1.915 0.567 0.118 0.027 19 2.2 parsopercularis 1029 775 2585 2.600 0.827 0.156 0.043 17 1.9 parsorbitalis 2194 1531 3102 1.871 0.481 0.141 0.035 33 3.1 parstriangularis 2425 1681 2222 1.498 0.388 0.129 0.030 26 3.1 pericalcarine 5390 3641 6249 1.634 0.482 0.099 0.019 44 4.6 postcentral 1052 807 2182 2.363 0.636 0.146 0.032 16 1.5 posteriorcingulate 6436 4093 8724 2.102 0.624 0.108 0.023 48 6.2 precentral 5366 3746 6867 1.789 0.479 0.131 0.024 56 5.4 precuneus 659 496 1611 2.678 0.850 0.190 0.071 19 2.3 rostralanteriorcingulate 6974 5230 11365 2.015 0.607 0.160 0.047 112 15.2 rostralmiddlefrontal 8246 5953 14183 2.161 0.525 0.140 0.034 94 12.6 superiorfrontal 6059 4308 7836 1.680 0.477 0.123 0.022 65 5.8 superiorparietal 3727 2609 4838 1.755 0.633 0.111 0.025 34 4.2 superiortemporal 5144 3583 7116 1.911 0.512 0.120 0.026 52 5.9 supramarginal 366 322 1158 2.621 0.634 0.222 0.074 9 1.3 frontalpole 251 186 384 1.723 0.718 0.126 0.038 9 0.3 temporalpole 417 247 498 1.874 0.429 0.107 0.013 4 0.2 transversetemporal 2396 1791 3398 1.807 0.666 0.102 0.026 18 3.0 insula mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab assurgentMRI07112018 rh pial computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.pial... reading input pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.pial... reading input white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 149562 Total vertex volume 147804 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 1040 720 1496 2.113 0.623 0.110 0.022 9 0.9 bankssts 782 664 1408 2.406 0.804 0.144 0.029 16 0.9 caudalanteriorcingulate 2445 1849 3719 2.140 0.568 0.125 0.022 23 2.5 caudalmiddlefrontal 2564 1930 3170 1.837 0.444 0.131 0.028 31 3.6 cuneus 1111 933 1189 1.459 0.552 0.142 0.048 23 2.3 entorhinal 2769 2211 3539 1.766 0.514 0.151 0.049 132 6.3 fusiform 5321 4215 7584 1.888 0.485 0.135 0.026 56 6.0 inferiorparietal 3102 3108 4678 1.793 0.657 0.196 0.047 48 7.3 inferiortemporal 1136 1012 1689 1.787 0.803 0.141 0.032 33 1.5 isthmuscingulate 5846 4659 8254 1.918 0.483 0.135 0.028 88 7.1 lateraloccipital 3127 2764 5613 2.186 0.832 0.166 0.044 45 5.9 lateralorbitofrontal 3971 3428 5597 1.800 0.610 0.142 0.032 53 5.9 lingual 2076 2013 3527 1.994 0.628 0.178 0.041 30 3.8 medialorbitofrontal 3416 3235 5011 1.789 0.556 0.158 0.030 51 4.7 middletemporal 991 888 1278 1.700 0.659 0.168 0.044 31 2.3 parahippocampal 2123 1592 3128 2.021 0.565 0.121 0.022 18 2.1 paracentral 1916 1366 2487 1.915 0.567 0.122 0.023 18 1.8 parsopercularis 1029 1204 2585 2.600 0.827 0.190 0.036 13 1.7 parsorbitalis 2194 1878 3102 1.871 0.481 0.159 0.031 27 3.0 parstriangularis 2425 1485 2222 1.498 0.388 0.113 0.028 53 2.7 pericalcarine 5390 4170 6249 1.634 0.482 0.105 0.017 33 4.2 postcentral 1052 1040 2182 2.363 0.636 0.169 0.033 15 1.6 posteriorcingulate 6436 4293 8724 2.102 0.624 0.103 0.020 85 5.6 precentral 5366 3872 6867 1.789 0.479 0.123 0.023 54 4.9 precuneus 659 746 1611 2.678 0.850 0.234 0.054 11 1.8 rostralanteriorcingulate 6974 6188 11365 2.015 0.607 0.171 0.039 96 13.7 rostralmiddlefrontal 8246 7182 14183 2.161 0.525 0.148 0.032 90 11.6 superiorfrontal 6059 4997 7836 1.680 0.477 0.133 0.022 52 5.6 superiorparietal 3727 2995 4838 1.755 0.633 0.115 0.021 26 3.5 superiortemporal 5144 4000 7116 1.911 0.512 0.130 0.026 46 5.7 supramarginal 366 582 1158 2.621 0.634 0.292 0.073 6 1.4 frontalpole 251 255 384 1.723 0.718 0.146 0.034 2 0.4 temporalpole 417 297 498 1.874 0.429 0.090 0.011 2 0.1 transversetemporal 2396 1907 3398 1.807 0.666 0.137 0.044 48 5.0 insula #----------------------------------------- #@# Cortical Parc 2 lh Tue Jul 17 23:08:22 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 assurgentMRI07112018 lh ../surf/lh.sphere.reg /xnat/apps/freesurfer/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /xnat/apps/freesurfer/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 2.9 using min determinant for regularization = 0.086 0 singular and 762 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 146 labels changed using aseg relabeling using gibbs priors... 000: 7755 changed, 118454 examined... 001: 1767 changed, 30430 examined... 002: 533 changed, 9405 examined... 003: 237 changed, 3051 examined... 004: 119 changed, 1379 examined... 005: 48 changed, 665 examined... 006: 25 changed, 285 examined... 007: 17 changed, 144 examined... 008: 14 changed, 98 examined... 009: 10 changed, 72 examined... 010: 2 changed, 54 examined... 011: 0 changed, 14 examined... 93 labels changed using aseg 000: 214 total segments, 124 labels (1399 vertices) changed 001: 95 total segments, 6 labels (61 vertices) changed 002: 89 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 25 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 1078 vertices marked for relabeling... 1078 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 14 seconds. #----------------------------------------- #@# Cortical Parc 2 rh Tue Jul 17 23:08:37 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 assurgentMRI07112018 rh ../surf/rh.sphere.reg /xnat/apps/freesurfer/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /xnat/apps/freesurfer/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 719 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 126 labels changed using aseg relabeling using gibbs priors... 000: 7373 changed, 109561 examined... 001: 1693 changed, 28901 examined... 002: 487 changed, 8888 examined... 003: 230 changed, 2819 examined... 004: 136 changed, 1303 examined... 005: 66 changed, 710 examined... 006: 27 changed, 365 examined... 007: 17 changed, 148 examined... 008: 9 changed, 86 examined... 009: 2 changed, 47 examined... 010: 0 changed, 14 examined... 44 labels changed using aseg 000: 239 total segments, 152 labels (1585 vertices) changed 001: 97 total segments, 11 labels (55 vertices) changed 002: 85 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 33 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 1478 vertices marked for relabeling... 1478 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 14 seconds. #----------------------------------------- #@# Parcellation Stats 2 lh Tue Jul 17 23:08:50 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab assurgentMRI07112018 lh white computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white... reading input pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.pial... reading input white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 176672 Total vertex volume 172967 (mask=0) reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 983 723 1612 1.971 0.662 0.137 0.055 15 2.9 G&S_frontomargin 1094 764 2002 2.319 0.590 0.141 0.029 15 1.2 G&S_occipital_inf 1392 928 1903 1.901 0.506 0.128 0.026 15 1.4 G&S_paracentral 1407 960 2675 2.358 0.588 0.137 0.034 18 1.8 G&S_subcentral 700 533 1403 2.084 0.576 0.198 0.063 20 2.1 G&S_transv_frontopol 2075 1418 3261 2.261 0.643 0.128 0.027 26 2.5 G&S_cingul-Ant 1247 844 1971 2.359 0.656 0.124 0.027 15 1.2 G&S_cingul-Mid-Ant 1394 979 2436 2.298 0.726 0.130 0.031 15 1.8 G&S_cingul-Mid-Post 533 434 1603 2.786 0.724 0.183 0.056 10 1.1 G_cingul-Post-dorsal 232 186 440 2.073 0.966 0.231 0.088 9 1.0 G_cingul-Post-ventral 1744 1176 2034 1.643 0.409 0.147 0.028 26 2.0 G_cuneus 1160 824 2476 2.365 0.537 0.138 0.033 16 1.6 G_front_inf-Opercular 384 257 853 2.519 0.771 0.156 0.053 6 0.9 G_front_inf-Orbital 1153 770 2082 2.182 0.653 0.157 0.055 19 2.7 G_front_inf-Triangul 3695 2692 7427 2.177 0.603 0.160 0.046 65 7.5 G_front_middle 6207 4311 11827 2.280 0.574 0.137 0.033 83 8.5 G_front_sup 510 342 920 2.542 0.773 0.105 0.034 6 0.6 G_Ins_lg&S_cent_ins 538 338 1345 2.998 0.949 0.087 0.042 5 0.8 G_insular_short 2134 1521 4054 2.259 0.560 0.156 0.032 36 2.9 G_occipital_middle 1300 879 1542 1.736 0.377 0.140 0.030 17 1.5 G_occipital_sup 1215 881 2533 2.465 0.612 0.148 0.025 19 1.3 G_oc-temp_lat-fusifor 2709 1914 4425 2.052 0.688 0.150 0.030 43 3.4 G_oc-temp_med-Lingual 1462 924 2307 1.952 0.837 0.124 0.044 31 2.4 G_oc-temp_med-Parahip 2122 1540 4884 2.503 0.792 0.168 0.049 38 4.7 G_orbital 2564 1847 4784 2.150 0.502 0.150 0.034 48 3.9 G_pariet_inf-Angular 2362 1786 4674 2.279 0.622 0.163 0.044 41 4.6 G_pariet_inf-Supramar 2332 1594 3652 1.908 0.474 0.146 0.032 37 3.0 G_parietal_sup 2252 1451 3008 1.751 0.472 0.126 0.027 31 2.5 G_postcentral 2547 1607 4293 2.218 0.558 0.112 0.028 21 2.6 G_precentral 2780 1959 5015 2.166 0.598 0.148 0.033 41 3.8 G_precuneus 682 465 1227 2.017 0.581 0.157 0.030 12 1.0 G_rectus 657 433 680 1.927 0.708 0.129 0.057 13 1.7 G_subcallosal 439 246 672 2.274 0.450 0.095 0.020 3 0.3 G_temp_sup-G_T_transv 1596 1177 3642 2.326 0.634 0.161 0.035 28 2.6 G_temp_sup-Lateral 624 469 877 1.638 0.417 0.063 0.010 1 0.2 G_temp_sup-Plan_polar 691 501 1569 2.609 0.769 0.119 0.028 7 0.7 G_temp_sup-Plan_tempo 2488 1714 5129 2.225 0.904 0.147 0.040 46 4.5 G_temporal_inf 2283 1667 4951 2.207 0.709 0.154 0.039 45 4.4 G_temporal_middle 215 163 274 1.917 0.427 0.121 0.017 2 0.1 Lat_Fis-ant-Horizont 281 209 386 2.236 0.392 0.093 0.016 1 0.2 Lat_Fis-ant-Vertical 802 561 1049 2.194 0.561 0.100 0.017 3 0.6 Lat_Fis-post 1692 1196 2901 2.113 0.614 0.158 0.032 25 2.2 Pole_occipital 1502 1057 3073 2.094 0.794 0.176 0.065 32 4.4 Pole_temporal 2202 1510 2120 1.607 0.491 0.121 0.023 22 2.0 S_calcarine 3027 2067 3108 1.683 0.579 0.098 0.017 15 2.2 S_central 1055 728 1258 1.901 0.610 0.095 0.014 5 0.6 S_cingul-Marginalis 440 305 580 2.144 0.644 0.089 0.025 2 0.4 S_circular_insula_ant 1177 799 1110 1.572 0.463 0.071 0.010 6 0.5 S_circular_insula_inf 1407 1001 1858 2.181 0.551 0.088 0.014 5 0.9 S_circular_insula_sup 853 600 1052 1.780 0.677 0.162 0.029 15 1.2 S_collat_transv_ant 358 248 472 2.020 0.405 0.139 0.031 3 0.6 S_collat_transv_post 2154 1519 2791 1.925 0.513 0.118 0.023 16 2.1 S_front_inf 1095 777 1314 1.836 0.510 0.107 0.020 7 0.9 S_front_middle 2394 1739 3124 1.950 0.527 0.118 0.024 22 2.7 S_front_sup 473 334 583 2.206 0.506 0.126 0.020 4 0.4 S_interm_prim-Jensen 2548 1722 2558 1.643 0.402 0.096 0.011 14 1.3 S_intrapariet&P_trans 690 493 831 1.858 0.438 0.138 0.032 6 0.9 S_oc_middle&Lunatus 1086 756 1135 1.687 0.407 0.114 0.015 8 0.8 S_oc_sup&transversal 596 406 895 2.182 0.605 0.126 0.023 5 0.6 S_occipital_ant 844 632 1276 2.071 0.484 0.153 0.030 11 1.1 S_oc-temp_lat 1841 1346 2284 1.922 0.629 0.141 0.024 25 2.1 S_oc-temp_med&Lingual 201 145 249 1.742 0.335 0.091 0.019 1 0.1 S_orbital_lateral 445 336 769 2.289 0.956 0.124 0.028 5 0.6 S_orbital_med-olfact 1331 945 2210 2.351 0.886 0.143 0.032 17 2.1 S_orbital-H_Shaped 2525 1715 2789 1.763 0.523 0.119 0.022 21 2.3 S_parieto_occipital 1238 799 946 1.572 0.731 0.129 0.026 24 1.4 S_pericallosal 2708 1844 3059 1.806 0.394 0.104 0.016 17 2.0 S_postcentral 1623 1111 2211 2.100 0.543 0.103 0.018 9 1.2 S_precentral-inf-part 1339 944 1696 2.036 0.552 0.114 0.020 10 1.2 S_precentral-sup-part 602 453 726 1.931 0.449 0.155 0.026 14 0.7 S_suborbital 921 655 1232 2.100 0.475 0.133 0.028 7 1.1 S_subparietal 1330 937 1571 1.837 0.411 0.103 0.015 9 0.8 S_temporal_inf 4947 3456 6911 2.034 0.523 0.102 0.020 37 3.8 S_temporal_sup 283 189 374 2.199 0.420 0.116 0.021 2 0.3 S_temporal_transverse #----------------------------------------- #@# Parcellation Stats 2 rh Tue Jul 17 23:09:18 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab assurgentMRI07112018 rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white... reading input pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.pial... reading input white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 149562 Total vertex volume 147804 (mask=0) reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 610 462 1180 2.329 0.662 0.160 0.049 11 1.1 G&S_frontomargin 793 591 1231 1.992 0.467 0.166 0.035 14 1.1 G&S_occipital_inf 1251 825 1882 1.882 0.513 0.130 0.027 14 1.4 G&S_paracentral 1233 821 1829 2.099 0.568 0.122 0.027 13 1.4 G&S_subcentral 888 769 2119 2.212 0.514 0.225 0.079 23 3.4 G&S_transv_frontopol 2199 1545 3661 2.203 0.621 0.137 0.041 32 4.1 G&S_cingul-Ant 923 707 1591 2.259 0.403 0.111 0.015 9 0.6 G&S_cingul-Mid-Ant 1425 983 2420 2.272 0.519 0.123 0.029 12 1.6 G&S_cingul-Mid-Post 476 375 1123 2.403 0.725 0.189 0.052 9 0.9 G_cingul-Post-dorsal 308 214 691 2.209 1.012 0.162 0.037 6 0.4 G_cingul-Post-ventral 2304 1567 2885 1.792 0.462 0.167 0.039 40 3.7 G_cuneus 1468 978 2255 2.048 0.621 0.137 0.039 20 2.4 G_front_inf-Opercular 351 255 749 2.265 0.529 0.175 0.042 8 0.6 G_front_inf-Orbital 1019 702 1551 1.903 0.533 0.155 0.045 21 2.0 G_front_inf-Triangul 3249 2439 6276 2.098 0.522 0.173 0.053 61 8.2 G_front_middle 5444 3926 10614 2.233 0.559 0.155 0.039 79 9.8 G_front_sup 331 264 566 1.865 0.565 0.082 0.015 2 0.2 G_Ins_lg&S_cent_ins 401 296 895 2.429 0.974 0.092 0.025 3 0.4 G_insular_short 1631 1197 3045 2.105 0.526 0.158 0.032 26 2.3 G_occipital_middle 1206 819 1376 1.563 0.369 0.119 0.019 14 1.0 G_occipital_sup 990 729 1455 1.904 0.436 0.164 0.039 14 1.7 G_oc-temp_lat-fusifor 2617 1850 3978 1.873 0.634 0.160 0.038 41 4.1 G_oc-temp_med-Lingual 1969 1326 2491 1.609 0.608 0.157 0.066 53 5.7 G_oc-temp_med-Parahip 2627 1968 5665 2.278 0.860 0.180 0.072 60 9.8 G_orbital 2126 1506 3295 1.910 0.468 0.134 0.032 28 3.1 G_pariet_inf-Angular 2369 1668 3842 2.019 0.528 0.124 0.027 28 2.8 G_pariet_inf-Supramar 1834 1382 3156 1.894 0.500 0.146 0.033 27 2.7 G_parietal_sup 1898 1276 2295 1.544 0.309 0.108 0.024 21 2.1 G_postcentral 2442 1432 3965 2.288 0.599 0.107 0.025 21 2.6 G_precentral 2289 1637 3681 1.895 0.461 0.157 0.029 37 2.7 G_precuneus 724 523 1704 2.247 0.694 0.178 0.051 21 2.1 G_rectus 228 167 248 1.723 0.624 0.101 0.078 6 0.9 G_subcallosal 302 162 350 1.886 0.487 0.091 0.012 2 0.1 G_temp_sup-G_T_transv 1298 955 2339 2.061 0.676 0.150 0.040 21 2.4 G_temp_sup-Lateral 498 346 604 1.500 0.413 0.098 0.028 10 0.5 G_temp_sup-Plan_polar 671 473 825 1.776 0.702 0.105 0.023 7 0.7 G_temp_sup-Plan_tempo 1837 1259 3035 1.985 0.752 0.161 0.045 40 4.0 G_temporal_inf 1925 1392 3237 1.877 0.574 0.158 0.045 42 3.4 G_temporal_middle 393 272 389 1.691 0.331 0.101 0.013 2 0.2 Lat_Fis-ant-Horizont 91 74 125 1.997 0.529 0.164 0.027 1 0.1 Lat_Fis-ant-Vertical 1276 907 1281 1.595 0.471 0.087 0.011 4 0.7 Lat_Fis-post 3078 2129 4138 1.821 0.477 0.157 0.035 48 4.6 Pole_occipital 929 781 1585 1.650 0.590 0.172 0.053 18 2.5 Pole_temporal 2512 1761 2383 1.550 0.452 0.116 0.026 22 2.9 S_calcarine 2742 1839 2670 1.670 0.593 0.088 0.014 12 1.6 S_central 1101 811 1252 1.667 0.423 0.101 0.014 6 0.7 S_cingul-Marginalis 348 261 505 2.131 0.553 0.103 0.017 2 0.3 S_circular_insula_ant 869 598 714 1.288 0.237 0.066 0.006 2 0.3 S_circular_insula_inf 1044 746 1232 1.867 0.517 0.100 0.017 5 0.8 S_circular_insula_sup 761 524 1104 1.858 0.676 0.149 0.045 12 1.6 S_collat_transv_ant 321 215 275 1.680 0.355 0.161 0.040 5 0.7 S_collat_transv_post 2402 1678 3180 1.873 0.546 0.129 0.030 25 2.9 S_front_inf 1606 1183 2063 2.015 0.642 0.128 0.028 12 1.8 S_front_middle 1827 1332 2512 2.071 0.670 0.110 0.025 13 1.8 S_front_sup 419 305 501 1.817 0.363 0.119 0.022 3 0.4 S_interm_prim-Jensen 2774 1960 2994 1.615 0.459 0.103 0.015 17 1.9 S_intrapariet&P_trans 748 528 798 1.816 0.405 0.124 0.022 6 0.7 S_oc_middle&Lunatus 780 532 887 1.737 0.454 0.136 0.030 9 1.0 S_oc_sup&transversal 602 437 696 1.709 0.379 0.139 0.021 6 0.6 S_occipital_ant 566 415 601 1.559 0.373 0.134 0.018 5 0.4 S_oc-temp_lat 1463 1046 1743 1.743 0.566 0.144 0.037 26 2.3 S_oc-temp_med&Lingual 592 414 685 1.783 0.509 0.150 0.030 8 0.9 S_orbital_lateral 443 326 851 2.366 0.854 0.096 0.015 2 0.2 S_orbital_med-olfact 972 707 1720 2.331 0.915 0.126 0.028 10 1.1 S_orbital-H_Shaped 2505 1669 2695 1.716 0.462 0.123 0.021 22 2.4 S_parieto_occipital 885 565 826 2.002 1.129 0.135 0.027 21 1.0 S_pericallosal 2599 1726 2572 1.671 0.421 0.089 0.015 12 1.6 S_postcentral 1227 849 1161 1.575 0.387 0.086 0.011 5 0.6 S_precentral-inf-part 1186 789 1452 2.260 0.592 0.111 0.020 8 1.0 S_precentral-sup-part 265 202 436 1.960 0.441 0.121 0.015 3 0.2 S_suborbital 1030 725 1109 1.705 0.378 0.116 0.021 7 0.9 S_subparietal 829 601 747 1.472 0.356 0.149 0.020 10 0.9 S_temporal_inf 4455 3072 5557 1.884 0.521 0.117 0.023 37 4.4 S_temporal_sup 205 127 262 2.132 0.455 0.128 0.018 2 0.2 S_temporal_transverse #----------------------------------------- #@# Cortical Parc 3 lh Tue Jul 17 23:09:45 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 assurgentMRI07112018 lh ../surf/lh.sphere.reg /xnat/apps/freesurfer/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /xnat/apps/freesurfer/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 383 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 690 labels changed using aseg relabeling using gibbs priors... 000: 1818 changed, 118454 examined... 001: 402 changed, 8580 examined... 002: 120 changed, 2298 examined... 003: 37 changed, 736 examined... 004: 20 changed, 231 examined... 005: 20 changed, 141 examined... 006: 13 changed, 123 examined... 007: 9 changed, 70 examined... 008: 5 changed, 56 examined... 009: 3 changed, 31 examined... 010: 2 changed, 28 examined... 011: 2 changed, 7 examined... 012: 1 changed, 13 examined... 013: 1 changed, 7 examined... 014: 0 changed, 5 examined... 163 labels changed using aseg 000: 60 total segments, 27 labels (296 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 4 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 793 vertices marked for relabeling... 793 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas.annot... classification took 0 minutes and 11 seconds. #----------------------------------------- #@# Cortical Parc 3 rh Tue Jul 17 23:09:56 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 assurgentMRI07112018 rh ../surf/rh.sphere.reg /xnat/apps/freesurfer/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /xnat/apps/freesurfer/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.009 0 singular and 325 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1201 labels changed using aseg relabeling using gibbs priors... 000: 1723 changed, 109561 examined... 001: 377 changed, 8094 examined... 002: 122 changed, 2155 examined... 003: 56 changed, 724 examined... 004: 38 changed, 282 examined... 005: 25 changed, 198 examined... 006: 21 changed, 129 examined... 007: 16 changed, 105 examined... 008: 15 changed, 91 examined... 009: 13 changed, 80 examined... 010: 13 changed, 68 examined... 011: 11 changed, 66 examined... 012: 8 changed, 57 examined... 013: 5 changed, 42 examined... 014: 8 changed, 26 examined... 015: 3 changed, 33 examined... 016: 3 changed, 15 examined... 017: 2 changed, 19 examined... 018: 0 changed, 10 examined... 422 labels changed using aseg 000: 66 total segments, 33 labels (319 vertices) changed 001: 34 total segments, 1 labels (1 vertices) changed 002: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 3 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1210 vertices marked for relabeling... 1210 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas.annot... classification took 0 minutes and 11 seconds. #----------------------------------------- #@# Parcellation Stats 3 lh Tue Jul 17 23:10:07 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab assurgentMRI07112018 lh white computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot. reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white... reading input pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.pial... reading input white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 176672 Total vertex volume 172967 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 1443 962 2321 2.416 0.633 0.143 0.032 24 1.6 caudalanteriorcingulate 3144 2272 5439 2.234 0.563 0.120 0.026 27 3.4 caudalmiddlefrontal 2935 1989 3208 1.606 0.364 0.133 0.025 35 3.1 cuneus 607 429 1037 1.714 0.781 0.129 0.039 9 1.1 entorhinal 3308 2341 5196 2.107 0.641 0.149 0.029 52 4.4 fusiform 6056 4386 9603 2.037 0.510 0.128 0.025 76 6.3 inferiorparietal 4478 3112 7962 2.066 0.809 0.147 0.040 74 8.2 inferiortemporal 1529 1110 2572 2.052 0.800 0.148 0.041 26 2.7 isthmuscingulate 5853 4055 9361 2.115 0.582 0.150 0.030 81 7.4 lateraloccipital 3785 2640 6881 2.348 0.859 0.153 0.052 69 9.6 lateralorbitofrontal 3923 2810 5929 1.990 0.683 0.148 0.028 57 4.9 lingual 1767 1288 2781 1.989 0.616 0.147 0.029 32 2.2 medialorbitofrontal 5235 3740 9289 2.112 0.650 0.131 0.031 71 7.2 middletemporal 1009 641 1526 2.145 0.840 0.116 0.034 21 1.3 parahippocampal 2238 1480 3327 2.186 0.556 0.114 0.021 18 1.9 paracentral 1957 1383 3441 2.242 0.544 0.125 0.027 21 2.0 parsopercularis 877 646 1851 2.466 0.791 0.132 0.031 10 1.1 parsorbitalis 2192 1523 3413 2.088 0.552 0.136 0.039 26 3.7 parstriangularis 1842 1253 1688 1.511 0.358 0.121 0.024 18 1.7 pericalcarine 6650 4415 8501 1.774 0.567 0.113 0.023 65 6.5 postcentral 1757 1255 3109 2.233 0.890 0.144 0.033 29 2.4 posteriorcingulate 6801 4531 10068 2.142 0.545 0.110 0.024 51 6.4 precentral 5398 3751 8032 2.043 0.597 0.133 0.027 59 5.9 precuneus 1364 869 1994 2.254 0.815 0.122 0.030 19 1.8 rostralanteriorcingulate 4953 3566 8082 1.993 0.596 0.148 0.037 67 8.2 rostralmiddlefrontal 9959 7139 16967 2.119 0.562 0.136 0.032 132 14.4 superiorfrontal 5176 3544 6631 1.760 0.451 0.125 0.023 58 5.1 superiorparietal 6188 4354 10604 2.091 0.655 0.112 0.025 64 6.3 superiortemporal 4637 3368 7585 2.155 0.600 0.144 0.033 60 6.8 supramarginal 533 314 744 2.202 0.469 0.095 0.019 4 0.3 transversetemporal 2318 1585 3826 2.334 0.898 0.087 0.025 18 2.3 insula #----------------------------------------- #@# Parcellation Stats 3 rh Tue Jul 17 23:10:35 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab assurgentMRI07112018 rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot. reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white... reading input pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.pial... reading input white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 149562 Total vertex volume 147804 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 827 627 1489 2.375 0.774 0.134 0.029 16 1.1 caudalanteriorcingulate 2549 1742 3814 2.149 0.562 0.120 0.027 22 2.8 caudalmiddlefrontal 3081 2050 3637 1.780 0.452 0.151 0.033 45 4.3 cuneus 968 677 1099 1.506 0.594 0.151 0.079 25 2.9 entorhinal 2644 1874 3453 1.793 0.504 0.158 0.044 51 5.2 fusiform 5147 3683 7372 1.882 0.481 0.130 0.026 56 6.0 inferiorparietal 3258 2371 4874 1.792 0.685 0.160 0.043 62 6.8 inferiortemporal 1245 878 1760 1.727 0.809 0.143 0.035 23 1.6 isthmuscingulate 5918 4146 8184 1.885 0.466 0.150 0.031 86 7.9 lateraloccipital 3400 2512 6275 2.235 0.835 0.158 0.056 61 9.6 lateralorbitofrontal 3916 2809 5483 1.799 0.609 0.152 0.035 55 6.1 lingual 1480 1115 2971 2.105 0.692 0.146 0.035 28 2.6 medialorbitofrontal 4080 2923 5800 1.800 0.564 0.140 0.033 62 5.7 middletemporal 1031 681 1300 1.679 0.656 0.118 0.023 15 1.1 parahippocampal 2238 1480 3371 2.046 0.562 0.117 0.023 17 2.1 paracentral 2114 1439 2787 1.919 0.541 0.118 0.028 21 2.3 parsopercularis 868 655 2017 2.422 0.661 0.158 0.039 13 1.5 parsorbitalis 2208 1541 3116 1.856 0.527 0.140 0.035 33 3.3 parstriangularis 2411 1664 2219 1.506 0.390 0.132 0.031 27 3.2 pericalcarine 5932 4009 6961 1.652 0.488 0.101 0.019 49 5.0 postcentral 1109 843 2223 2.357 0.667 0.147 0.033 16 1.6 posteriorcingulate 6209 3966 8423 2.077 0.622 0.110 0.023 48 6.0 precentral 5402 3805 7172 1.811 0.486 0.134 0.024 61 5.6 precuneus 876 625 1853 2.434 0.916 0.164 0.071 24 3.1 rostralanteriorcingulate 5212 3877 8500 1.997 0.630 0.157 0.045 82 10.8 rostralmiddlefrontal 10514 7675 18288 2.171 0.551 0.146 0.037 136 17.9 superiorfrontal 4990 3553 6435 1.676 0.475 0.122 0.024 52 5.0 superiorparietal 5055 3512 6841 1.810 0.643 0.115 0.026 56 5.9 superiortemporal 4905 3416 6749 1.898 0.512 0.120 0.027 51 5.7 supramarginal 400 236 479 1.880 0.435 0.107 0.013 3 0.2 transversetemporal 2012 1508 2856 1.830 0.693 0.085 0.014 10 1.2 insula #----------------------------------------- #@# WM/GM Contrast lh Tue Jul 17 23:11:03 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts pctsurfcon --s assurgentMRI07112018 --lh-only Log file is /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts/pctsurfcon.log Tue Jul 17 23:11:03 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts /xnat/apps/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $ Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /xnat/apps/freesurfer mri_vol2surf --mov /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/tmp.pctsurfcon.4565/lh.wm.mgh --regheader assurgentMRI07112018 --cortex srcvol = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig.mgz as target reference. -------- original matrix ----------- -0.01390 0.99990 -0.00000 -0.00003; 0.99168 0.01379 -0.12801 0.00000; 0.12800 0.00178 0.99177 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.cortex.label Reading surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 78759 Masking with /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.cortex.label Writing to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/tmp.pctsurfcon.4565/lh.wm.mgh Dim: 118454 1 1 mri_vol2surf --mov /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/tmp.pctsurfcon.4565/lh.gm.mgh --projfrac 0.3 --regheader assurgentMRI07112018 --cortex srcvol = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig.mgz as target reference. -------- original matrix ----------- -0.01390 0.99990 -0.00000 -0.00003; 0.99168 0.01379 -0.12801 0.00000; 0.12800 0.00178 0.99177 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.cortex.label Reading surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Done reading source surface Reading thickness /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 91031 Masking with /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.cortex.label Writing to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/tmp.pctsurfcon.4565/lh.gm.mgh Dim: 118454 1 1 mri_concat /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/tmp.pctsurfcon.4565/lh.wm.mgh /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/tmp.pctsurfcon.4565/lh.gm.mgh --paired-diff-norm --mul 100 --o /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.w-g.pct.mgh mri_segstats --in /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.w-g.pct.mgh --annot assurgentMRI07112018 lh aparc --sum /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/stats/lh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --in /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.w-g.pct.mgh --annot assurgentMRI07112018 lh aparc --sum /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/stats/lh.w-g.pct.stats --snr sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat UseRobust 0 Constructing seg from annotation Reading annotation /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 1000 Loading /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.w-g.pct.mgh Vertex Area is 0.695684 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up #----------------------------------------- #@# WM/GM Contrast rh Tue Jul 17 23:11:10 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts pctsurfcon --s assurgentMRI07112018 --rh-only Log file is /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts/pctsurfcon.log Tue Jul 17 23:11:10 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/scripts /xnat/apps/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $ Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /xnat/apps/freesurfer mri_vol2surf --mov /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/tmp.pctsurfcon.4642/rh.wm.mgh --regheader assurgentMRI07112018 --cortex srcvol = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig.mgz as target reference. -------- original matrix ----------- -0.01390 0.99990 -0.00000 -0.00003; 0.99168 0.01379 -0.12801 0.00000; 0.12800 0.00178 0.99177 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.cortex.label Reading surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 73310 Masking with /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.cortex.label Writing to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/tmp.pctsurfcon.4642/rh.wm.mgh Dim: 109561 1 1 mri_vol2surf --mov /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/tmp.pctsurfcon.4642/rh.gm.mgh --projfrac 0.3 --regheader assurgentMRI07112018 --cortex srcvol = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/orig.mgz as target reference. -------- original matrix ----------- -0.01390 0.99990 -0.00000 -0.00003; 0.99168 0.01379 -0.12801 0.00000; 0.12800 0.00178 0.99177 0.00000; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.cortex.label Reading surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Done reading source surface Reading thickness /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 84171 Masking with /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.cortex.label Writing to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/tmp.pctsurfcon.4642/rh.gm.mgh Dim: 109561 1 1 mri_concat /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/tmp.pctsurfcon.4642/rh.wm.mgh /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/tmp.pctsurfcon.4642/rh.gm.mgh --paired-diff-norm --mul 100 --o /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.w-g.pct.mgh mri_segstats --in /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.w-g.pct.mgh --annot assurgentMRI07112018 rh aparc --sum /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/stats/rh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --in /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.w-g.pct.mgh --annot assurgentMRI07112018 rh aparc --sum /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/stats/rh.w-g.pct.stats --snr sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat UseRobust 0 Constructing seg from annotation Reading annotation /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 2000 Loading /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.w-g.pct.mgh Vertex Area is 0.703438 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up #----------------------------------------- #@# Relabel Hypointensities Tue Jul 17 23:11:16 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz reading input surface ../surf/lh.white... relabeling lh hypointensities... 14034 voxels changed to hypointensity... reading input surface ../surf/rh.white... relabeling rh hypointensities... 18394 voxels changed to hypointensity... 31468 hypointense voxels neighboring cortex changed #----------------------------------------- #@# AParc-to-ASeg aparc Tue Jul 17 23:11:32 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018 mri_aparc2aseg --s assurgentMRI07112018 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt relabeling unlikely voxels interior to white matter surface: norm: mri/norm.mgz XFORM: mri/transforms/talairach.m3z GCA: /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca label intensities: mri/aseg.auto_noCCseg.label_intensities.txt SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 subject assurgentMRI07112018 outvol /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/aparc+aseg.mgz useribbon 0 baseoffset 0 RipUnknown 0 Reading lh white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading lh pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.pial Loading lh annotations from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Reading rh white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading rh pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.pial Loading rh annotations from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/aseg.presurf.hypos.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; ------------------------- Labeling Slice relabeling unlikely voxels in interior of white matter setting orig areas to linear transform determinant scaled 6.23 reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt rescaling Left_Cerebral_White_Matter from 107 --> 105 rescaling Left_Cerebral_Cortex from 61 --> 76 rescaling Left_Lateral_Ventricle from 13 --> 14 rescaling Left_Inf_Lat_Vent from 34 --> 32 rescaling Left_Cerebellum_White_Matter from 86 --> 90 rescaling Left_Cerebellum_Cortex from 60 --> 62 rescaling Left_Thalamus from 94 --> 104 rescaling Left_Thalamus_Proper from 84 --> 91 rescaling Left_Caudate from 75 --> 83 rescaling Left_Putamen from 80 --> 82 rescaling Left_Pallidum from 98 --> 100 rescaling Third_Ventricle from 25 --> 22 rescaling Fourth_Ventricle from 22 --> 20 rescaling Brain_Stem from 81 --> 87 rescaling Left_Hippocampus from 57 --> 71 rescaling Left_Amygdala from 56 --> 68 rescaling CSF from 32 --> 36 rescaling Left_Accumbens_area from 62 --> 67 rescaling Left_VentralDC from 87 --> 99 rescaling Right_Cerebral_White_Matter from 105 --> 103 rescaling Right_Cerebral_Cortex from 58 --> 82 rescaling Right_Lateral_Ventricle from 13 --> 14 rescaling Right_Inf_Lat_Vent from 25 --> 27 rescaling Right_Cerebellum_White_Matter from 87 --> 90 rescaling Right_Cerebellum_Cortex from 59 --> 62 rescaling Right_Thalamus_Proper from 85 --> 88 rescaling Right_Caudate from 62 --> 82 rescaling Right_Putamen from 80 --> 89 rescaling Right_Pallidum from 97 --> 101 rescaling Right_Hippocampus from 53 --> 66 rescaling Right_Amygdala from 55 --> 68 rescaling Right_Accumbens_area from 65 --> 81 rescaling Right_VentralDC from 86 --> 103 rescaling Fifth_Ventricle from 40 --> 32 rescaling WM_hypointensities from 78 --> 78 rescaling non_WM_hypointensities from 40 --> 44 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 318883 Used brute-force search on 0 voxels relabeling unlikely voxels in interior of white matter average std[0] = 7.3 pass 1: 353 changed. pass 2: 26 changed. pass 3: 9 changed. pass 4: 5 changed. pass 5: 3 changed. pass 6: 2 changed. pass 7: 2 changed. pass 8: 2 changed. pass 9: 2 changed. pass 10: 2 changed. pass 11: 2 changed. nchanged = 0 Writing output aseg to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/aparc+aseg.mgz #----------------------------------------- #@# AParc-to-ASeg a2009s Tue Jul 17 23:17:02 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018 mri_aparc2aseg --s assurgentMRI07112018 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s relabeling unlikely voxels interior to white matter surface: norm: mri/norm.mgz XFORM: mri/transforms/talairach.m3z GCA: /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca label intensities: mri/aseg.auto_noCCseg.label_intensities.txt SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 subject assurgentMRI07112018 outvol /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/aparc.a2009s+aseg.mgz useribbon 0 baseoffset 10100 RipUnknown 0 Reading lh white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading lh pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.pial Loading lh annotations from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Reading rh white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading rh pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.pial Loading rh annotations from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/aseg.presurf.hypos.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; ------------------------- Labeling Slice relabeling unlikely voxels in interior of white matter setting orig areas to linear transform determinant scaled 6.23 reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt rescaling Left_Cerebral_White_Matter from 107 --> 105 rescaling Left_Cerebral_Cortex from 61 --> 76 rescaling Left_Lateral_Ventricle from 13 --> 14 rescaling Left_Inf_Lat_Vent from 34 --> 32 rescaling Left_Cerebellum_White_Matter from 86 --> 90 rescaling Left_Cerebellum_Cortex from 60 --> 62 rescaling Left_Thalamus from 94 --> 104 rescaling Left_Thalamus_Proper from 84 --> 91 rescaling Left_Caudate from 75 --> 83 rescaling Left_Putamen from 80 --> 82 rescaling Left_Pallidum from 98 --> 100 rescaling Third_Ventricle from 25 --> 22 rescaling Fourth_Ventricle from 22 --> 20 rescaling Brain_Stem from 81 --> 87 rescaling Left_Hippocampus from 57 --> 71 rescaling Left_Amygdala from 56 --> 68 rescaling CSF from 32 --> 36 rescaling Left_Accumbens_area from 62 --> 67 rescaling Left_VentralDC from 87 --> 99 rescaling Right_Cerebral_White_Matter from 105 --> 103 rescaling Right_Cerebral_Cortex from 58 --> 82 rescaling Right_Lateral_Ventricle from 13 --> 14 rescaling Right_Inf_Lat_Vent from 25 --> 27 rescaling Right_Cerebellum_White_Matter from 87 --> 90 rescaling Right_Cerebellum_Cortex from 59 --> 62 rescaling Right_Thalamus_Proper from 85 --> 88 rescaling Right_Caudate from 62 --> 82 rescaling Right_Putamen from 80 --> 89 rescaling Right_Pallidum from 97 --> 101 rescaling Right_Hippocampus from 53 --> 66 rescaling Right_Amygdala from 55 --> 68 rescaling Right_Accumbens_area from 65 --> 81 rescaling Right_VentralDC from 86 --> 103 rescaling Fifth_Ventricle from 40 --> 32 rescaling WM_hypointensities from 78 --> 78 rescaling non_WM_hypointensities from 40 --> 44 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 319014 Used brute-force search on 0 voxels relabeling unlikely voxels in interior of white matter average std[0] = 7.3 pass 1: 353 changed. pass 2: 26 changed. pass 3: 9 changed. pass 4: 5 changed. pass 5: 3 changed. pass 6: 2 changed. pass 7: 2 changed. pass 8: 2 changed. pass 9: 2 changed. pass 10: 2 changed. pass 11: 2 changed. nchanged = 0 Writing output aseg to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/aparc.a2009s+aseg.mgz #----------------------------------------- #@# AParc-to-ASeg DKTatlas Tue Jul 17 23:22:26 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018 mri_aparc2aseg --s assurgentMRI07112018 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz relabeling unlikely voxels interior to white matter surface: norm: mri/norm.mgz XFORM: mri/transforms/talairach.m3z GCA: /xnat/apps/freesurfer/average/RB_all_2016-05-10.vc700.gca label intensities: mri/aseg.auto_noCCseg.label_intensities.txt SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 subject assurgentMRI07112018 outvol mri/aparc.DKTatlas+aseg.mgz useribbon 0 baseoffset 0 RipUnknown 0 Reading lh white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading lh pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.pial Loading lh annotations from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.aparc.DKTatlas.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Reading rh white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading rh pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.pial Loading rh annotations from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.aparc.DKTatlas.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/aseg.presurf.hypos.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; ------------------------- Labeling Slice relabeling unlikely voxels in interior of white matter setting orig areas to linear transform determinant scaled 6.23 reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt rescaling Left_Cerebral_White_Matter from 107 --> 105 rescaling Left_Cerebral_Cortex from 61 --> 76 rescaling Left_Lateral_Ventricle from 13 --> 14 rescaling Left_Inf_Lat_Vent from 34 --> 32 rescaling Left_Cerebellum_White_Matter from 86 --> 90 rescaling Left_Cerebellum_Cortex from 60 --> 62 rescaling Left_Thalamus from 94 --> 104 rescaling Left_Thalamus_Proper from 84 --> 91 rescaling Left_Caudate from 75 --> 83 rescaling Left_Putamen from 80 --> 82 rescaling Left_Pallidum from 98 --> 100 rescaling Third_Ventricle from 25 --> 22 rescaling Fourth_Ventricle from 22 --> 20 rescaling Brain_Stem from 81 --> 87 rescaling Left_Hippocampus from 57 --> 71 rescaling Left_Amygdala from 56 --> 68 rescaling CSF from 32 --> 36 rescaling Left_Accumbens_area from 62 --> 67 rescaling Left_VentralDC from 87 --> 99 rescaling Right_Cerebral_White_Matter from 105 --> 103 rescaling Right_Cerebral_Cortex from 58 --> 82 rescaling Right_Lateral_Ventricle from 13 --> 14 rescaling Right_Inf_Lat_Vent from 25 --> 27 rescaling Right_Cerebellum_White_Matter from 87 --> 90 rescaling Right_Cerebellum_Cortex from 59 --> 62 rescaling Right_Thalamus_Proper from 85 --> 88 rescaling Right_Caudate from 62 --> 82 rescaling Right_Putamen from 80 --> 89 rescaling Right_Pallidum from 97 --> 101 rescaling Right_Hippocampus from 53 --> 66 rescaling Right_Amygdala from 55 --> 68 rescaling Right_Accumbens_area from 65 --> 81 rescaling Right_VentralDC from 86 --> 103 rescaling Fifth_Ventricle from 40 --> 32 rescaling WM_hypointensities from 78 --> 78 rescaling non_WM_hypointensities from 40 --> 44 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 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/data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri apas2aseg --i aparc+aseg.mgz --o aseg.mgz Tue Jul 17 23:27:48 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri /xnat/apps/freesurfer/bin/apas2aseg --i aparc+aseg.mgz --o aseg.mgz freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c $Id: apas2aseg,v 1.2 2016/02/12 21:43:14 zkaufman Exp $ Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux mri_binarize --i aparc+aseg.mgz --o aseg.mgz --replace 1000 3 --replace 2000 42 --replace 1001 3 --replace 2001 42 --replace 1002 3 --replace 2002 42 --replace 1003 3 --replace 2003 42 --replace 1004 3 --replace 2004 42 --replace 1005 3 --replace 2005 42 --replace 1006 3 --replace 2006 42 --replace 1007 3 --replace 2007 42 --replace 1008 3 --replace 2008 42 --replace 1009 3 --replace 2009 42 --replace 1010 3 --replace 2010 42 --replace 1011 3 --replace 2011 42 --replace 1012 3 --replace 2012 42 --replace 1013 3 --replace 2013 42 --replace 1014 3 --replace 2014 42 --replace 1015 3 --replace 2015 42 --replace 1016 3 --replace 2016 42 --replace 1017 3 --replace 2017 42 --replace 1018 3 --replace 2018 42 --replace 1019 3 --replace 2019 42 --replace 1020 3 --replace 2020 42 --replace 1021 3 --replace 2021 42 --replace 1022 3 --replace 2022 42 --replace 1023 3 --replace 2023 42 --replace 1024 3 --replace 2024 42 --replace 1025 3 --replace 2025 42 --replace 1026 3 --replace 2026 42 --replace 1027 3 --replace 2027 42 --replace 1028 3 --replace 2028 42 --replace 1029 3 --replace 2029 42 --replace 1030 3 --replace 2030 42 --replace 1031 3 --replace 2031 42 --replace 1032 3 --replace 2032 42 --replace 1033 3 --replace 2033 42 --replace 1034 3 --replace 2034 42 --replace 1035 3 --replace 2035 42 $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri cmdline mri_binarize.bin --i aparc+aseg.mgz --o aseg.mgz --replace 1000 3 --replace 2000 42 --replace 1001 3 --replace 2001 42 --replace 1002 3 --replace 2002 42 --replace 1003 3 --replace 2003 42 --replace 1004 3 --replace 2004 42 --replace 1005 3 --replace 2005 42 --replace 1006 3 --replace 2006 42 --replace 1007 3 --replace 2007 42 --replace 1008 3 --replace 2008 42 --replace 1009 3 --replace 2009 42 --replace 1010 3 --replace 2010 42 --replace 1011 3 --replace 2011 42 --replace 1012 3 --replace 2012 42 --replace 1013 3 --replace 2013 42 --replace 1014 3 --replace 2014 42 --replace 1015 3 --replace 2015 42 --replace 1016 3 --replace 2016 42 --replace 1017 3 --replace 2017 42 --replace 1018 3 --replace 2018 42 --replace 1019 3 --replace 2019 42 --replace 1020 3 --replace 2020 42 --replace 1021 3 --replace 2021 42 --replace 1022 3 --replace 2022 42 --replace 1023 3 --replace 2023 42 --replace 1024 3 --replace 2024 42 --replace 1025 3 --replace 2025 42 --replace 1026 3 --replace 2026 42 --replace 1027 3 --replace 2027 42 --replace 1028 3 --replace 2028 42 --replace 1029 3 --replace 2029 42 --replace 1030 3 --replace 2030 42 --replace 1031 3 --replace 2031 42 --replace 1032 3 --replace 2032 42 --replace 1033 3 --replace 2033 42 --replace 1034 3 --replace 2034 42 --replace 1035 3 --replace 2035 42 sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat input aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output aseg.mgz Binarizing based on threshold min -infinity max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Replacing 72 1: 1000 3 2: 2000 42 3: 1001 3 4: 2001 42 5: 1002 3 6: 2002 42 7: 1003 3 8: 2003 42 9: 1004 3 10: 2004 42 11: 1005 3 12: 2005 42 13: 1006 3 14: 2006 42 15: 1007 3 16: 2007 42 17: 1008 3 18: 2008 42 19: 1009 3 20: 2009 42 21: 1010 3 22: 2010 42 23: 1011 3 24: 2011 42 25: 1012 3 26: 2012 42 27: 1013 3 28: 2013 42 29: 1014 3 30: 2014 42 31: 1015 3 32: 2015 42 33: 1016 3 34: 2016 42 35: 1017 3 36: 2017 42 37: 1018 3 38: 2018 42 39: 1019 3 40: 2019 42 41: 1020 3 42: 2020 42 43: 1021 3 44: 2021 42 45: 1022 3 46: 2022 42 47: 1023 3 48: 2023 42 49: 1024 3 50: 2024 42 51: 1025 3 52: 2025 42 53: 1026 3 54: 2026 42 55: 1027 3 56: 2027 42 57: 1028 3 58: 2028 42 59: 1029 3 60: 2029 42 61: 1030 3 62: 2030 42 63: 1031 3 64: 2031 42 65: 1032 3 66: 2032 42 67: 1033 3 68: 2033 42 69: 1034 3 70: 2034 42 71: 1035 3 72: 2035 42 Found 0 values in range Counting number of voxels in first frame Found 0 voxels in final mask Count: 0 0.000000 16777216 0.000000 mri_binarize done Started at Tue Jul 17 23:27:48 CDT 2018 Ended at Tue Jul 17 23:27:55 CDT 2018 Apas2aseg-Run-Time-Sec 7 apas2aseg Done #-------------------------------------------- #@# ASeg Stats Tue Jul 17 23:27:55 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018 mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /xnat/apps/freesurfer/ASegStatsLUT.txt --subject assurgentMRI07112018 $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /xnat/apps/freesurfer/ASegStatsLUT.txt --subject assurgentMRI07112018 sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat UseRobust 0 atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) Computing euler number orig.nofix lheno = -50, rheno = -66 orig.nofix lhholes = 26, rhholes = 34 Loading mri/aseg.mgz Getting Brain Volume Statistics lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation Reporting on 45 segmentations Using PrintSegStat mri_segstats done #----------------------------------------- #@# WMParc Tue Jul 17 23:29:47 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018 mri_aparc2aseg --s assurgentMRI07112018 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 subject assurgentMRI07112018 outvol mri/wmparc.mgz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 5.000000 RipUnknown 1 CtxSeg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/aparc+aseg.mgz Reading lh white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading lh pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.pial Loading lh annotations from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Reading rh white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading rh pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.pial Loading rh annotations from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/ribbon.mgz Loading filled from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/ribbon.mgz Ripping vertices labeled as unkown Ripped 8572 vertices from left hemi Ripped 7694 vertices from right hemi Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/aseg.mgz Loading Ctx Seg File /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/aparc+aseg.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 713021 Used brute-force search on 30 voxels Fixing Parahip LH WM Found 7 clusters 0 k 2.000000 1 k 1.000000 2 k 1.000000 3 k 5.000000 4 k 1226.000000 5 k 11.000000 6 k 1.000000 Fixing Parahip RH WM Found 6 clusters 0 k 1159.000000 1 k 1.000000 2 k 1.000000 3 k 3.000000 4 k 1.000000 5 k 1.000000 Writing output aseg to mri/wmparc.mgz mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject assurgentMRI07112018 --surf-wm-vol --ctab /xnat/apps/freesurfer/WMParcStatsLUT.txt --etiv $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject assurgentMRI07112018 --surf-wm-vol --ctab /xnat/apps/freesurfer/WMParcStatsLUT.txt --etiv sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat UseRobust 0 atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation Reporting on 70 segmentations Using PrintSegStat mri_segstats done /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label #-------------------------------------------- #@# BA_exvivo Labels lh Tue Jul 17 23:38:29 CDT 2018 mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA1_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA1_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 231 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.label 4360 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA2_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA2_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 299 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.label 8208 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA3a_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA3a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 125 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.label 4202 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA3b_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA3b_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 239 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.label 6222 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA4a_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA4a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 211 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.label 5995 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA4p_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA4p_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 121 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.label 4191 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA6_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA6_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA6_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 812 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.label 14401 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA44_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA44_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA44_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 232 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.label 4413 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA45_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA45_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA45_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 626 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.label 4048 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.V1_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.V1_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.V1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 792 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.label 5433 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.V2_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.V2_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.V2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 1549 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.label 9663 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.MT_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.MT_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.MT_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 150 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.label 2168 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.entorhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1290 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1290 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 162 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.label 1452 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.perirhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 232 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.label 1431 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 68 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.thresh.label 1082 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 121 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.thresh.label 2213 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA3a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 39 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.thresh.label 1543 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA3b_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 84 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.thresh.label 2080 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA4a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 85 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.thresh.label 2404 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA4p_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 36 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.thresh.label 1585 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA6_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 400 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.thresh.label 7435 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA44_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 88 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.thresh.label 2000 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.BA45_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 294 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.thresh.label 1445 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.V1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 610 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.thresh.label 4015 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.V2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 679 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.thresh.label 4013 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.MT_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 62 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.thresh.label 575 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 470 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 470 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 48 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.thresh.label 518 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/lh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./lh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 450 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 450 nlabel points Performing mapping from target back to the source label 118454 Number of reverse mapping hits = 120 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.thresh.label 570 mri_label2label: Done mris_label2annot --s assurgentMRI07112018 --hemi lh --ctab /xnat/apps/freesurfer/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.entorhinal_exvivo.label --l lh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /xnat/apps/freesurfer/average/colortable_BA.txt Number of ctab entries 15 $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label cmdline mris_label2annot --s assurgentMRI07112018 --hemi lh --ctab /xnat/apps/freesurfer/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.entorhinal_exvivo.label --l lh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat subject assurgentMRI07112018 hemi lh SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 ColorTable /xnat/apps/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 81479 unhit vertices Writing annot to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.BA_exvivo.annot mris_label2annot --s assurgentMRI07112018 --hemi lh --ctab /xnat/apps/freesurfer/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /xnat/apps/freesurfer/average/colortable_BA.txt Number of ctab entries 15 $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label cmdline mris_label2annot --s assurgentMRI07112018 --hemi lh --ctab /xnat/apps/freesurfer/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat subject assurgentMRI07112018 hemi lh SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 ColorTable /xnat/apps/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 96374 unhit vertices Writing annot to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/lh.BA_exvivo.thresh.annot mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab assurgentMRI07112018 lh white computing statistics for each annotation in ./lh.BA_exvivo.annot. reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white... reading input pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.pial... reading input white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 176672 Total vertex volume 172967 (mask=0) reading colortable from annotation file... colortable with 15 entries read (originally /xnat/apps/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 1069 679 1429 1.770 0.452 0.136 0.034 19 1.5 BA1_exvivo 3601 2463 4628 1.855 0.442 0.109 0.019 27 2.9 BA2_exvivo 991 652 825 1.533 0.390 0.112 0.025 6 0.8 BA3a_exvivo 2135 1453 2603 1.581 0.593 0.114 0.026 22 2.2 BA3b_exvivo 1432 956 2348 2.265 0.602 0.114 0.021 11 1.4 BA4a_exvivo 1159 796 1623 2.081 0.450 0.104 0.017 6 1.0 BA4p_exvivo 8694 5923 14150 2.196 0.559 0.121 0.026 80 9.1 BA6_exvivo 2056 1476 3325 2.042 0.484 0.114 0.022 18 1.8 BA44_exvivo 2868 1974 4696 2.112 0.612 0.140 0.039 36 4.8 BA45_exvivo 3126 2172 3676 1.644 0.525 0.127 0.024 36 3.1 V1_exvivo 6775 4711 9683 1.927 0.574 0.153 0.032 96 9.0 V2_exvivo 1615 1149 2626 2.233 0.560 0.136 0.027 18 1.8 MT_exvivo 592 403 1151 2.131 0.890 0.111 0.030 9 0.8 perirhinal_exvivo 862 500 900 1.585 0.494 0.122 0.044 19 1.2 entorhinal_exvivo mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab assurgentMRI07112018 lh white computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot. reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white... reading input pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.pial... reading input white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 176672 Total vertex volume 172967 (mask=0) reading colortable from annotation file... colortable with 15 entries read (originally /xnat/apps/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 690 425 920 1.727 0.414 0.144 0.033 10 0.9 BA1_exvivo 1579 1055 2087 1.842 0.423 0.104 0.018 13 1.2 BA2_exvivo 810 533 653 1.538 0.392 0.117 0.025 5 0.7 BA3a_exvivo 1337 928 1167 1.254 0.207 0.080 0.010 5 0.6 BA3b_exvivo 1354 925 2241 2.266 0.589 0.112 0.019 11 1.0 BA4a_exvivo 983 664 1361 2.125 0.450 0.105 0.020 6 0.8 BA4p_exvivo 4898 3274 7806 2.185 0.570 0.117 0.025 42 5.2 BA6_exvivo 1247 902 2209 2.094 0.475 0.121 0.026 13 1.3 BA44_exvivo 1218 818 2068 2.187 0.651 0.148 0.044 18 2.2 BA45_exvivo 3293 2293 3967 1.659 0.534 0.126 0.024 36 3.3 V1_exvivo 3404 2390 4834 1.932 0.557 0.171 0.036 59 5.0 V2_exvivo 469 304 834 2.440 0.610 0.146 0.026 7 0.6 MT_exvivo 323 217 535 1.887 0.791 0.086 0.025 3 0.4 perirhinal_exvivo 475 274 422 1.457 0.357 0.119 0.045 14 0.6 entorhinal_exvivo #-------------------------------------------- #@# BA_exvivo Labels rh Tue Jul 17 23:42:28 CDT 2018 mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA1_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA1_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 178 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.label 4140 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA2_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA2_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 236 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.label 6923 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA3a_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA3a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 71 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.label 4051 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA3b_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA3b_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 158 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.label 4680 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA4a_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA4a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 267 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.label 6014 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA4p_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA4p_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 113 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.label 4586 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA6_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA6_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA6_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 580 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.label 12836 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA44_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA44_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA44_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 704 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.label 7616 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA45_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA45_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA45_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 909 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.label 6264 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.V1_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.V1_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.V1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 1391 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.label 6118 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.V2_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.V2_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.V2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 1954 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.label 9970 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.MT_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.MT_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.MT_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 197 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.label 2129 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.entorhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1038 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1038 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 92 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.label 1130 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject assurgentMRI07112018 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.perirhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 94 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.label 846 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 63 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.thresh.label 939 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 53 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.thresh.label 2741 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA3a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 33 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.thresh.label 1731 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA3b_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 63 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.thresh.label 2246 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA4a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 49 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.thresh.label 1437 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA4p_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 37 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.thresh.label 1526 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA6_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 332 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.thresh.label 7291 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA44_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 100 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.thresh.label 1112 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.BA45_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 165 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.thresh.label 1343 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.V1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 998 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.thresh.label 4230 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.V2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 1033 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.thresh.label 4470 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.MT_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 36 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.thresh.label 304 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 694 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 694 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 58 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.thresh.label 752 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject assurgentMRI07112018 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/label/rh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = assurgentMRI07112018 trglabel = ./rh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 FREESURFER_HOME /xnat/apps/freesurfer Loading source label. Found 291 points in source label. Starting surface-based mapping Reading source registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white Reading target registration /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 291 nlabel points Performing mapping from target back to the source label 109561 Number of reverse mapping hits = 27 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.thresh.label 318 mri_label2label: Done mris_label2annot --s assurgentMRI07112018 --hemi rh --ctab /xnat/apps/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /xnat/apps/freesurfer/average/colortable_BA.txt Number of ctab entries 15 $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label cmdline mris_label2annot --s assurgentMRI07112018 --hemi rh --ctab /xnat/apps/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat subject assurgentMRI07112018 hemi rh SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 ColorTable /xnat/apps/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 72431 unhit vertices Writing annot to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.BA_exvivo.annot mris_label2annot --s assurgentMRI07112018 --hemi rh --ctab /xnat/apps/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /xnat/apps/freesurfer/average/colortable_BA.txt Number of ctab entries 15 $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label cmdline mris_label2annot --s assurgentMRI07112018 --hemi rh --ctab /xnat/apps/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat subject assurgentMRI07112018 hemi rh SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 ColorTable /xnat/apps/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 88415 unhit vertices Writing annot to /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/label/rh.BA_exvivo.thresh.annot mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab assurgentMRI07112018 rh white computing statistics for each annotation in ./rh.BA_exvivo.annot. reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white... reading input pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.pial... reading input white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 149562 Total vertex volume 147804 (mask=0) reading colortable from annotation file... colortable with 15 entries read (originally /xnat/apps/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 925 562 1165 1.657 0.369 0.154 0.040 17 1.7 BA1_exvivo 2965 2037 3088 1.587 0.369 0.085 0.014 14 1.9 BA2_exvivo 989 634 804 1.546 0.398 0.118 0.021 7 0.8 BA3a_exvivo 1668 1179 1757 1.398 0.379 0.083 0.012 9 0.9 BA3b_exvivo 1381 870 2425 2.317 0.620 0.104 0.020 10 1.2 BA4a_exvivo 1151 746 1543 2.114 0.555 0.087 0.016 5 0.8 BA4p_exvivo 7024 4606 11378 2.239 0.562 0.121 0.026 64 7.5 BA6_exvivo 3261 2220 4195 1.851 0.568 0.120 0.028 33 3.8 BA44_exvivo 4161 2956 6525 1.946 0.589 0.145 0.037 61 6.4 BA45_exvivo 3996 2800 4523 1.584 0.444 0.132 0.029 43 5.1 V1_exvivo 7140 4932 9371 1.850 0.510 0.162 0.037 117 11.3 V2_exvivo 1640 1165 2265 1.873 0.454 0.144 0.030 21 2.2 MT_exvivo 467 318 568 1.568 0.592 0.092 0.019 4 0.4 perirhinal_exvivo 362 236 333 1.483 0.439 0.152 0.054 11 1.0 entorhinal_exvivo mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab assurgentMRI07112018 rh white computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot. reading volume /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/mri/wm.mgz... reading input surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white... reading input pial surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.pial... reading input white surface /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 149562 Total vertex volume 147804 (mask=0) reading colortable from annotation file... colortable with 15 entries read (originally /xnat/apps/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1522471 mm^3 (det: 1.279568 ) lhCtxGM: 172618.933 172356.000 diff= 262.9 pctdiff= 0.152 rhCtxGM: 147368.668 146740.000 diff= 628.7 pctdiff= 0.427 lhCtxWM: 204153.177 204619.000 diff= -465.8 pctdiff=-0.228 rhCtxWM: 190252.762 190765.000 diff= -512.2 pctdiff=-0.269 SubCortGMVol 37364.000 SupraTentVol 814455.541 (811900.000) diff=2555.541 pctdiff=0.314 SupraTentVolNotVent 754443.541 (751888.000) diff=2555.541 pctdiff=0.339 BrainSegVol 948595.000 (942722.000) diff=5873.000 pctdiff=0.619 BrainSegVolNotVent 880647.000 (880323.541) diff=323.459 pctdiff=0.037 BrainSegVolNotVent 880647.000 CerebellumVol 128522.000 VentChorVol 60012.000 3rd4th5thCSF 7936.000 CSFVol 2063.000, OptChiasmVol 237.000 MaskVol 1482602.000 617 368 694 1.531 0.326 0.140 0.031 11 1.0 BA1_exvivo 1631 1133 1898 1.662 0.342 0.078 0.011 7 0.8 BA2_exvivo 896 576 668 1.530 0.400 0.119 0.021 6 0.7 BA3a_exvivo 1311 922 1207 1.313 0.313 0.073 0.010 5 0.5 BA3b_exvivo 804 512 1505 2.349 0.613 0.121 0.027 8 1.0 BA4a_exvivo 964 645 1357 2.174 0.569 0.083 0.013 4 0.6 BA4p_exvivo 4548 2928 7261 2.262 0.565 0.120 0.026 41 4.9 BA6_exvivo 790 566 1192 1.944 0.652 0.135 0.038 11 1.1 BA44_exvivo 1005 684 1446 1.876 0.444 0.146 0.037 18 1.4 BA45_exvivo 3830 2686 4173 1.563 0.433 0.129 0.028 40 4.7 V1_exvivo 3964 2732 5421 1.856 0.524 0.173 0.042 69 7.4 V2_exvivo 255 175 319 1.645 0.421 0.132 0.025 3 0.3 MT_exvivo 318 213 359 1.510 0.528 0.084 0.016 2 0.2 perirhinal_exvivo 213 147 187 1.494 0.443 0.161 0.045 5 0.4 entorhinal_exvivo #-------------------------------------------- #@# Qdec Cache preproc lh thickness fsaverage Tue Jul 17 23:46:13 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi lh --meas thickness --target fsaverage --out lh.thickness.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.7122 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is lh.thickness.fsaverage.mris_preproc.log Tue Jul 17 23:46:13 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi lh --meas thickness --target fsaverage --out lh.thickness.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.7122 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:46:13 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7122/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.thickness --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7122/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.thickness --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.thickness srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.7122/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.thickness Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (118454) Reverse Loop had 13609 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 152955, nTrgMulti = 10887, MnTrgMultiHits = 2.25002 nSrc121 = 74848, nSrcLost = 0, nSrcMulti = 43606, MnSrcMultiHits = 2.35296 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.7122/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.7122/assurgentMRI07112018.1.mgh --o lh.thickness.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.thickness.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.7122 Tue Jul 17 23:46:19 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh area fsaverage Tue Jul 17 23:46:19 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi lh --meas area --target fsaverage --out lh.area.fsaverage.mgh nsubjects = 1 INFO: turning on jacobican correction tmpdir is ./tmp.mris_preproc.7238 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is lh.area.fsaverage.mris_preproc.log Tue Jul 17 23:46:19 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi lh --meas area --target fsaverage --out lh.area.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.7238 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:46:19 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7238/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.area --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7238/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.area --jac --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.area srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.7238/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.area Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (118454) Reverse Loop had 13609 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 152955, nTrgMulti = 10887, MnTrgMultiHits = 2.25002 nSrc121 = 74848, nSrcLost = 0, nSrcMulti = 43606, MnSrcMultiHits = 2.35296 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.7238/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.7238/assurgentMRI07112018.1.mgh --o lh.area.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.area.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.7238 Tue Jul 17 23:46:25 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh area.pial fsaverage Tue Jul 17 23:46:25 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi lh --meas area.pial --target fsaverage --out lh.area.pial.fsaverage.mgh nsubjects = 1 INFO: turning on jacobican correction tmpdir is ./tmp.mris_preproc.7351 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is lh.area.pial.fsaverage.mris_preproc.log Tue Jul 17 23:46:25 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi lh --meas area.pial --target fsaverage --out lh.area.pial.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.7351 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:46:25 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7351/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.area.pial --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7351/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.area.pial --jac --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.area.pial srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.7351/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.area.pial Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (118454) Reverse Loop had 13609 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 152955, nTrgMulti = 10887, MnTrgMultiHits = 2.25002 nSrc121 = 74848, nSrcLost = 0, nSrcMulti = 43606, MnSrcMultiHits = 2.35296 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.7351/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.7351/assurgentMRI07112018.1.mgh --o lh.area.pial.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.area.pial.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.7351 Tue Jul 17 23:46:32 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh volume fsaverage Tue Jul 17 23:46:32 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi lh --meas volume --target fsaverage --out lh.volume.fsaverage.mgh nsubjects = 1 INFO: turning on jacobican correction tmpdir is ./tmp.mris_preproc.7471 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is lh.volume.fsaverage.mris_preproc.log Tue Jul 17 23:46:32 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi lh --meas volume --target fsaverage --out lh.volume.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.7471 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:46:32 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7471/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.volume --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7471/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.volume --jac --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.volume srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.7471/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.volume Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (118454) Reverse Loop had 13609 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 152955, nTrgMulti = 10887, MnTrgMultiHits = 2.25002 nSrc121 = 74848, nSrcLost = 0, nSrcMulti = 43606, MnSrcMultiHits = 2.35296 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.7471/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.7471/assurgentMRI07112018.1.mgh --o lh.volume.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.volume.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.7471 Tue Jul 17 23:46:39 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh curv fsaverage Tue Jul 17 23:46:39 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi lh --meas curv --target fsaverage --out lh.curv.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.7586 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is lh.curv.fsaverage.mris_preproc.log Tue Jul 17 23:46:39 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi lh --meas curv --target fsaverage --out lh.curv.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.7586 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:46:39 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7586/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.curv --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7586/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.curv --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.curv srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.7586/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.curv Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (118454) Reverse Loop had 13609 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 152955, nTrgMulti = 10887, MnTrgMultiHits = 2.25002 nSrc121 = 74848, nSrcLost = 0, nSrcMulti = 43606, MnSrcMultiHits = 2.35296 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.7586/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.7586/assurgentMRI07112018.1.mgh --o lh.curv.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.curv.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.7586 Tue Jul 17 23:46:43 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh sulc fsaverage Tue Jul 17 23:46:43 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi lh --meas sulc --target fsaverage --out lh.sulc.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.7699 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is lh.sulc.fsaverage.mris_preproc.log Tue Jul 17 23:46:44 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi lh --meas sulc --target fsaverage --out lh.sulc.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.7699 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:46:44 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7699/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sulc --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7699/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sulc --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sulc srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.7699/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sulc Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (118454) Reverse Loop had 13609 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 152955, nTrgMulti = 10887, MnTrgMultiHits = 2.25002 nSrc121 = 74848, nSrcLost = 0, nSrcMulti = 43606, MnSrcMultiHits = 2.35296 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.7699/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.7699/assurgentMRI07112018.1.mgh --o lh.sulc.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.sulc.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.7699 Tue Jul 17 23:46:48 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh white.K fsaverage Tue Jul 17 23:46:48 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi lh --meas white.K --target fsaverage --out lh.white.K.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.7812 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is lh.white.K.fsaverage.mris_preproc.log Tue Jul 17 23:46:48 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi lh --meas white.K --target fsaverage --out lh.white.K.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.7812 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:46:49 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7812/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white.K --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7812/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white.K --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white.K srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.7812/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white.K Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (118454) Reverse Loop had 13609 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 152955, nTrgMulti = 10887, MnTrgMultiHits = 2.25002 nSrc121 = 74848, nSrcLost = 0, nSrcMulti = 43606, MnSrcMultiHits = 2.35296 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.7812/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.7812/assurgentMRI07112018.1.mgh --o lh.white.K.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.white.K.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.7812 Tue Jul 17 23:46:53 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh white.H fsaverage Tue Jul 17 23:46:53 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi lh --meas white.H --target fsaverage --out lh.white.H.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.7929 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is lh.white.H.fsaverage.mris_preproc.log Tue Jul 17 23:46:53 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi lh --meas white.H --target fsaverage --out lh.white.H.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.7929 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:46:53 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7929/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white.H --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.7929/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white.H --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white.H srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.7929/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.white.H Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (118454) Reverse Loop had 13609 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 152955, nTrgMulti = 10887, MnTrgMultiHits = 2.25002 nSrc121 = 74848, nSrcLost = 0, nSrcMulti = 43606, MnSrcMultiHits = 2.35296 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.7929/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.7929/assurgentMRI07112018.1.mgh --o lh.white.H.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.white.H.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.7929 Tue Jul 17 23:46:58 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh jacobian_white fsaverage Tue Jul 17 23:46:58 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi lh --meas jacobian_white --target fsaverage --out lh.jacobian_white.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.8045 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is lh.jacobian_white.fsaverage.mris_preproc.log Tue Jul 17 23:46:58 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi lh --meas jacobian_white --target fsaverage --out lh.jacobian_white.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.8045 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:46:58 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8045/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.jacobian_white --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8045/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.jacobian_white --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.jacobian_white srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.8045/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.jacobian_white Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (118454) Reverse Loop had 13609 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 152955, nTrgMulti = 10887, MnTrgMultiHits = 2.25002 nSrc121 = 74848, nSrcLost = 0, nSrcMulti = 43606, MnSrcMultiHits = 2.35296 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.8045/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.8045/assurgentMRI07112018.1.mgh --o lh.jacobian_white.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.jacobian_white.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.8045 Tue Jul 17 23:47:03 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh w-g.pct.mgh fsaverage Tue Jul 17 23:47:03 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi lh --meas w-g.pct.mgh --target fsaverage --out lh.w-g.pct.mgh.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.8159 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is lh.w-g.pct.mgh.fsaverage.mris_preproc.log Tue Jul 17 23:47:03 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi lh --meas w-g.pct.mgh --target fsaverage --out lh.w-g.pct.mgh.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.8159 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:47:03 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8159/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.w-g.pct.mgh --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8159/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.w-g.pct.mgh --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.w-g.pct.mgh srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.8159/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/lh.w-g.pct.mgh Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (118454) Reverse Loop had 13609 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 152955, nTrgMulti = 10887, MnTrgMultiHits = 2.25002 nSrc121 = 74848, nSrcLost = 0, nSrcMulti = 43606, MnSrcMultiHits = 2.35296 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.8159/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.8159/assurgentMRI07112018.1.mgh --o lh.w-g.pct.mgh.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.w-g.pct.mgh.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.8159 Tue Jul 17 23:47:08 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh thickness fsaverage Tue Jul 17 23:47:08 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi rh --meas thickness --target fsaverage --out rh.thickness.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.8272 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is rh.thickness.fsaverage.mris_preproc.log Tue Jul 17 23:47:08 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi rh --meas thickness --target fsaverage --out rh.thickness.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.8272 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:47:08 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8272/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.thickness --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8272/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.thickness --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.thickness srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.8272/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.thickness Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (109561) Reverse Loop had 11882 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 154567, nTrgMulti = 9275, MnTrgMultiHits = 2.28108 nSrc121 = 63372, nSrcLost = 0, nSrcMulti = 46189, MnSrcMultiHits = 2.43244 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.8272/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.8272/assurgentMRI07112018.1.mgh --o rh.thickness.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.thickness.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.8272 Tue Jul 17 23:47:13 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh area fsaverage Tue Jul 17 23:47:13 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi rh --meas area --target fsaverage --out rh.area.fsaverage.mgh nsubjects = 1 INFO: turning on jacobican correction tmpdir is ./tmp.mris_preproc.8386 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is rh.area.fsaverage.mris_preproc.log Tue Jul 17 23:47:13 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi rh --meas area --target fsaverage --out rh.area.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.8386 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:47:13 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8386/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.area --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8386/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.area --jac --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.area srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.8386/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.area Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (109561) Reverse Loop had 11882 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 154567, nTrgMulti = 9275, MnTrgMultiHits = 2.28108 nSrc121 = 63372, nSrcLost = 0, nSrcMulti = 46189, MnSrcMultiHits = 2.43244 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.8386/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.8386/assurgentMRI07112018.1.mgh --o rh.area.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.area.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.8386 Tue Jul 17 23:47:19 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh area.pial fsaverage Tue Jul 17 23:47:19 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi rh --meas area.pial --target fsaverage --out rh.area.pial.fsaverage.mgh nsubjects = 1 INFO: turning on jacobican correction tmpdir is ./tmp.mris_preproc.8502 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is rh.area.pial.fsaverage.mris_preproc.log Tue Jul 17 23:47:19 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi rh --meas area.pial --target fsaverage --out rh.area.pial.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.8502 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:47:19 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8502/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.area.pial --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8502/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.area.pial --jac --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.area.pial srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.8502/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.area.pial Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (109561) Reverse Loop had 11882 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 154567, nTrgMulti = 9275, MnTrgMultiHits = 2.28108 nSrc121 = 63372, nSrcLost = 0, nSrcMulti = 46189, MnSrcMultiHits = 2.43244 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.8502/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.8502/assurgentMRI07112018.1.mgh --o rh.area.pial.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.area.pial.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.8502 Tue Jul 17 23:47:25 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh volume fsaverage Tue Jul 17 23:47:25 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi rh --meas volume --target fsaverage --out rh.volume.fsaverage.mgh nsubjects = 1 INFO: turning on jacobican correction tmpdir is ./tmp.mris_preproc.8616 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is rh.volume.fsaverage.mris_preproc.log Tue Jul 17 23:47:25 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi rh --meas volume --target fsaverage --out rh.volume.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.8616 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:47:25 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8616/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.volume --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8616/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.volume --jac --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.volume srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.8616/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.volume Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (109561) Reverse Loop had 11882 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 154567, nTrgMulti = 9275, MnTrgMultiHits = 2.28108 nSrc121 = 63372, nSrcLost = 0, nSrcMulti = 46189, MnSrcMultiHits = 2.43244 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.8616/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.8616/assurgentMRI07112018.1.mgh --o rh.volume.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.volume.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.8616 Tue Jul 17 23:47:31 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh curv fsaverage Tue Jul 17 23:47:31 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi rh --meas curv --target fsaverage --out rh.curv.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.8735 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is rh.curv.fsaverage.mris_preproc.log Tue Jul 17 23:47:31 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi rh --meas curv --target fsaverage --out rh.curv.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.8735 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:47:31 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8735/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.curv --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8735/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.curv --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.curv srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.8735/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.curv Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (109561) Reverse Loop had 11882 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 154567, nTrgMulti = 9275, MnTrgMultiHits = 2.28108 nSrc121 = 63372, nSrcLost = 0, nSrcMulti = 46189, MnSrcMultiHits = 2.43244 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.8735/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.8735/assurgentMRI07112018.1.mgh --o rh.curv.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.curv.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.8735 Tue Jul 17 23:47:35 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh sulc fsaverage Tue Jul 17 23:47:35 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi rh --meas sulc --target fsaverage --out rh.sulc.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.8850 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is rh.sulc.fsaverage.mris_preproc.log Tue Jul 17 23:47:35 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi rh --meas sulc --target fsaverage --out rh.sulc.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.8850 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:47:35 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8850/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sulc --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.8850/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sulc --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sulc srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.8850/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sulc Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (109561) Reverse Loop had 11882 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 154567, nTrgMulti = 9275, MnTrgMultiHits = 2.28108 nSrc121 = 63372, nSrcLost = 0, nSrcMulti = 46189, MnSrcMultiHits = 2.43244 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.8850/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.8850/assurgentMRI07112018.1.mgh --o rh.sulc.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.sulc.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.8850 Tue Jul 17 23:47:40 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh white.K fsaverage Tue Jul 17 23:47:40 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi rh --meas white.K --target fsaverage --out rh.white.K.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.9033 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is rh.white.K.fsaverage.mris_preproc.log Tue Jul 17 23:47:40 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi rh --meas white.K --target fsaverage --out rh.white.K.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.9033 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:47:40 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.9033/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white.K --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.9033/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white.K --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white.K srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.9033/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white.K Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (109561) Reverse Loop had 11882 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 154567, nTrgMulti = 9275, MnTrgMultiHits = 2.28108 nSrc121 = 63372, nSrcLost = 0, nSrcMulti = 46189, MnSrcMultiHits = 2.43244 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.9033/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.9033/assurgentMRI07112018.1.mgh --o rh.white.K.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.white.K.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.9033 Tue Jul 17 23:47:45 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh white.H fsaverage Tue Jul 17 23:47:45 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi rh --meas white.H --target fsaverage --out rh.white.H.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.9189 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is rh.white.H.fsaverage.mris_preproc.log Tue Jul 17 23:47:45 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi rh --meas white.H --target fsaverage --out rh.white.H.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.9189 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:47:45 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.9189/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white.H --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.9189/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white.H --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white.H srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.9189/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.white.H Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (109561) Reverse Loop had 11882 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 154567, nTrgMulti = 9275, MnTrgMultiHits = 2.28108 nSrc121 = 63372, nSrcLost = 0, nSrcMulti = 46189, MnSrcMultiHits = 2.43244 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.9189/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.9189/assurgentMRI07112018.1.mgh --o rh.white.H.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.white.H.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.9189 Tue Jul 17 23:47:49 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh jacobian_white fsaverage Tue Jul 17 23:47:49 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi rh --meas jacobian_white --target fsaverage --out rh.jacobian_white.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.9308 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is rh.jacobian_white.fsaverage.mris_preproc.log Tue Jul 17 23:47:50 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi rh --meas jacobian_white --target fsaverage --out rh.jacobian_white.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.9308 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:47:50 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.9308/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.jacobian_white --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.9308/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.jacobian_white --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.jacobian_white srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.9308/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.jacobian_white Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (109561) Reverse Loop had 11882 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 154567, nTrgMulti = 9275, MnTrgMultiHits = 2.28108 nSrc121 = 63372, nSrcLost = 0, nSrcMulti = 46189, MnSrcMultiHits = 2.43244 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.9308/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.9308/assurgentMRI07112018.1.mgh --o rh.jacobian_white.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.jacobian_white.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.9308 Tue Jul 17 23:47:54 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh w-g.pct.mgh fsaverage Tue Jul 17 23:47:54 CDT 2018 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mris_preproc --s assurgentMRI07112018 --hemi rh --meas w-g.pct.mgh --target fsaverage --out rh.w-g.pct.mgh.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.9423 /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf Log file is rh.w-g.pct.mgh.fsaverage.mris_preproc.log Tue Jul 17 23:47:54 CDT 2018 setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf /xnat/apps/freesurfer/bin/mris_preproc --s assurgentMRI07112018 --hemi rh --meas w-g.pct.mgh --target fsaverage --out rh.w-g.pct.mgh.fsaverage.mgh Linux hhvrixnatp01 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.9423 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 assurgentMRI07112018 Tue Jul 17 23:47:54 CDT 2018 -------------- ----------------------- mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.9423/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.w-g.pct.mgh --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --srcsubject assurgentMRI07112018 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.9423/assurgentMRI07112018.1.mgh --sval /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.w-g.pct.mgh --sfmt curv --noreshape --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = assurgentMRI07112018 srcval = /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.w-g.pct.mgh srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.9423/assurgentMRI07112018.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.sphere.reg Loading source data Reading curvature file /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf/rh.w-g.pct.mgh Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (109561) Reverse Loop had 11882 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 154567, nTrgMulti = 9275, MnTrgMultiHits = 2.28108 nSrc121 = 63372, nSrcLost = 0, nSrcMulti = 46189, MnSrcMultiHits = 2.43244 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.9423/assurgentMRI07112018.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.9423/assurgentMRI07112018.1.mgh --o rh.w-g.pct.mgh.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.w-g.pct.mgh.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.9423 Tue Jul 17 23:47:59 CDT 2018 mris_preproc done #-------------------------------------------- #@# Qdec Cache surf2surf lh thickness fwhm0 fsaverage Tue Jul 17 23:47:59 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.thickness.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.thickness.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh thickness fwhm5 fsaverage Tue Jul 17 23:48:01 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.thickness.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.thickness.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh thickness fwhm10 fsaverage Tue Jul 17 23:48:05 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.thickness.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.thickness.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh thickness fwhm15 fsaverage Tue Jul 17 23:48:10 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.thickness.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.thickness.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh thickness fwhm20 fsaverage Tue Jul 17 23:48:14 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.thickness.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.thickness.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh thickness fwhm25 fsaverage Tue Jul 17 23:48:19 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.thickness.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.thickness.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area fwhm0 fsaverage Tue Jul 17 23:48:24 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.area.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area fwhm5 fsaverage Tue Jul 17 23:48:26 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.area.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area fwhm10 fsaverage Tue Jul 17 23:48:31 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.area.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area fwhm15 fsaverage Tue Jul 17 23:48:36 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.area.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area fwhm20 fsaverage Tue Jul 17 23:48:40 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.area.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area fwhm25 fsaverage Tue Jul 17 23:48:45 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.area.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area.pial fwhm0 fsaverage Tue Jul 17 23:48:50 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.pial.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.area.pial.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area.pial fwhm5 fsaverage Tue Jul 17 23:48:53 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.pial.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.area.pial.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area.pial fwhm10 fsaverage Tue Jul 17 23:48:57 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.pial.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.area.pial.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area.pial fwhm15 fsaverage Tue Jul 17 23:49:02 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.pial.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.area.pial.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area.pial fwhm20 fsaverage Tue Jul 17 23:49:06 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.pial.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.area.pial.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area.pial fwhm25 fsaverage Tue Jul 17 23:49:11 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.pial.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.area.pial.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh volume fwhm0 fsaverage Tue Jul 17 23:49:16 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.volume.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.volume.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh volume fwhm5 fsaverage Tue Jul 17 23:49:18 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.volume.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.volume.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh volume fwhm10 fsaverage Tue Jul 17 23:49:23 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.volume.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.volume.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh volume fwhm15 fsaverage Tue Jul 17 23:49:27 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.volume.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.volume.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh volume fwhm20 fsaverage Tue Jul 17 23:49:32 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.volume.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.volume.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh volume fwhm25 fsaverage Tue Jul 17 23:49:37 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.volume.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.volume.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh curv fwhm0 fsaverage Tue Jul 17 23:49:42 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.curv.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.curv.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh curv fwhm5 fsaverage Tue Jul 17 23:49:44 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.curv.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.curv.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh curv fwhm10 fsaverage Tue Jul 17 23:49:48 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.curv.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.curv.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh curv fwhm15 fsaverage Tue Jul 17 23:49:53 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.curv.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.curv.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh curv fwhm20 fsaverage Tue Jul 17 23:49:58 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.curv.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.curv.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh curv fwhm25 fsaverage Tue Jul 17 23:50:02 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.curv.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.curv.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh sulc fwhm0 fsaverage Tue Jul 17 23:50:08 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.sulc.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.sulc.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh sulc fwhm5 fsaverage Tue Jul 17 23:50:10 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.sulc.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.sulc.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh sulc fwhm10 fsaverage Tue Jul 17 23:50:14 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.sulc.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.sulc.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh sulc fwhm15 fsaverage Tue Jul 17 23:50:18 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.sulc.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.sulc.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh sulc fwhm20 fsaverage Tue Jul 17 23:50:23 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.sulc.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.sulc.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh sulc fwhm25 fsaverage Tue Jul 17 23:50:28 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.sulc.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.sulc.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.K fwhm0 fsaverage Tue Jul 17 23:50:33 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.K.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.white.K.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.K fwhm5 fsaverage Tue Jul 17 23:50:35 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.K.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.white.K.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.K fwhm10 fsaverage Tue Jul 17 23:50:39 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.K.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.white.K.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.K fwhm15 fsaverage Tue Jul 17 23:50:44 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.K.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.white.K.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.K fwhm20 fsaverage Tue Jul 17 23:50:48 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.K.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.white.K.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.K fwhm25 fsaverage Tue Jul 17 23:50:53 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.K.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.white.K.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.H fwhm0 fsaverage Tue Jul 17 23:50:58 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.H.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.white.H.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.H fwhm5 fsaverage Tue Jul 17 23:51:00 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.H.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.white.H.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.H fwhm10 fsaverage Tue Jul 17 23:51:05 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.H.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.white.H.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.H fwhm15 fsaverage Tue Jul 17 23:51:09 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.H.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.white.H.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.H fwhm20 fsaverage Tue Jul 17 23:51:14 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.H.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.white.H.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.H fwhm25 fsaverage Tue Jul 17 23:51:19 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.H.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.white.H.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh jacobian_white fwhm0 fsaverage Tue Jul 17 23:51:24 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.jacobian_white.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.jacobian_white.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh jacobian_white fwhm5 fsaverage Tue Jul 17 23:51:26 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.jacobian_white.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.jacobian_white.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh jacobian_white fwhm10 fsaverage Tue Jul 17 23:51:31 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.jacobian_white.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.jacobian_white.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh jacobian_white fwhm15 fsaverage Tue Jul 17 23:51:35 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.jacobian_white.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.jacobian_white.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh jacobian_white fwhm20 fsaverage Tue Jul 17 23:51:40 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.jacobian_white.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.jacobian_white.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh jacobian_white fwhm25 fsaverage Tue Jul 17 23:51:45 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.jacobian_white.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.jacobian_white.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh w-g.pct.mgh fwhm0 fsaverage Tue Jul 17 23:51:50 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.w-g.pct.mgh.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.w-g.pct.mgh.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh w-g.pct.mgh fwhm5 fsaverage Tue Jul 17 23:51:52 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.w-g.pct.mgh.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.w-g.pct.mgh.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh w-g.pct.mgh fwhm10 fsaverage Tue Jul 17 23:51:56 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.w-g.pct.mgh.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.w-g.pct.mgh.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh w-g.pct.mgh fwhm15 fsaverage Tue Jul 17 23:52:01 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.w-g.pct.mgh.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.w-g.pct.mgh.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh w-g.pct.mgh fwhm20 fsaverage Tue Jul 17 23:52:05 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.w-g.pct.mgh.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.w-g.pct.mgh.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh w-g.pct.mgh fwhm25 fsaverage Tue Jul 17 23:52:10 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = lh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.w-g.pct.mgh.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.w-g.pct.mgh.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh thickness fwhm0 fsaverage Tue Jul 17 23:52:15 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.thickness.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.thickness.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh thickness fwhm5 fsaverage Tue Jul 17 23:52:18 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.thickness.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.thickness.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh thickness fwhm10 fsaverage Tue Jul 17 23:52:22 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.thickness.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.thickness.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh thickness fwhm15 fsaverage Tue Jul 17 23:52:27 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.thickness.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.thickness.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh thickness fwhm20 fsaverage Tue Jul 17 23:52:31 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.thickness.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.thickness.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh thickness fwhm25 fsaverage Tue Jul 17 23:52:36 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.thickness.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.thickness.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area fwhm0 fsaverage Tue Jul 17 23:52:41 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.area.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area fwhm5 fsaverage Tue Jul 17 23:52:43 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.area.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area fwhm10 fsaverage Tue Jul 17 23:52:48 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.area.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area fwhm15 fsaverage Tue Jul 17 23:52:52 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.area.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area fwhm20 fsaverage Tue Jul 17 23:52:56 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.area.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area fwhm25 fsaverage Tue Jul 17 23:53:01 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.area.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area.pial fwhm0 fsaverage Tue Jul 17 23:53:06 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.pial.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.area.pial.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area.pial fwhm5 fsaverage Tue Jul 17 23:53:08 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.pial.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.area.pial.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area.pial fwhm10 fsaverage Tue Jul 17 23:53:13 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.pial.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.area.pial.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area.pial fwhm15 fsaverage Tue Jul 17 23:53:17 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.pial.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.area.pial.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area.pial fwhm20 fsaverage Tue Jul 17 23:53:22 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.pial.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.area.pial.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area.pial fwhm25 fsaverage Tue Jul 17 23:53:26 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.pial.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.area.pial.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh volume fwhm0 fsaverage Tue Jul 17 23:53:31 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.volume.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.volume.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh volume fwhm5 fsaverage Tue Jul 17 23:53:34 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.volume.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.volume.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh volume fwhm10 fsaverage Tue Jul 17 23:53:38 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.volume.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.volume.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh volume fwhm15 fsaverage Tue Jul 17 23:53:42 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.volume.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.volume.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh volume fwhm20 fsaverage Tue Jul 17 23:53:47 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.volume.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.volume.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh volume fwhm25 fsaverage Tue Jul 17 23:53:52 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.volume.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.volume.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh curv fwhm0 fsaverage Tue Jul 17 23:53:57 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.curv.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.curv.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh curv fwhm5 fsaverage Tue Jul 17 23:54:00 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.curv.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.curv.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh curv fwhm10 fsaverage Tue Jul 17 23:54:04 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.curv.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.curv.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh curv fwhm15 fsaverage Tue Jul 17 23:54:09 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.curv.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.curv.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh curv fwhm20 fsaverage Tue Jul 17 23:54:13 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.curv.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.curv.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh curv fwhm25 fsaverage Tue Jul 17 23:54:18 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.curv.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.curv.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh sulc fwhm0 fsaverage Tue Jul 17 23:54:23 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.sulc.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.sulc.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh sulc fwhm5 fsaverage Tue Jul 17 23:54:26 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.sulc.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.sulc.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh sulc fwhm10 fsaverage Tue Jul 17 23:54:30 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.sulc.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.sulc.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh sulc fwhm15 fsaverage Tue Jul 17 23:54:34 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.sulc.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.sulc.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh sulc fwhm20 fsaverage Tue Jul 17 23:54:39 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.sulc.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.sulc.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh sulc fwhm25 fsaverage Tue Jul 17 23:54:44 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.sulc.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.sulc.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.K fwhm0 fsaverage Tue Jul 17 23:54:49 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.K.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.white.K.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.K fwhm5 fsaverage Tue Jul 17 23:54:51 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.K.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.white.K.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.K fwhm10 fsaverage Tue Jul 17 23:54:55 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.K.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.white.K.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.K fwhm15 fsaverage Tue Jul 17 23:54:59 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.K.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.white.K.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.K fwhm20 fsaverage Tue Jul 17 23:55:04 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.K.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.white.K.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.K fwhm25 fsaverage Tue Jul 17 23:55:09 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.K.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.white.K.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.H fwhm0 fsaverage Tue Jul 17 23:55:14 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.H.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.white.H.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.H fwhm5 fsaverage Tue Jul 17 23:55:16 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.H.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.white.H.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.H fwhm10 fsaverage Tue Jul 17 23:55:20 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.H.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.white.H.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.H fwhm15 fsaverage Tue Jul 17 23:55:25 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.H.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.white.H.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.H fwhm20 fsaverage Tue Jul 17 23:55:29 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.H.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.white.H.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.H fwhm25 fsaverage Tue Jul 17 23:55:34 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.H.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.white.H.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh jacobian_white fwhm0 fsaverage Tue Jul 17 23:55:39 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.jacobian_white.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.jacobian_white.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh jacobian_white fwhm5 fsaverage Tue Jul 17 23:55:41 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.jacobian_white.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.jacobian_white.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh jacobian_white fwhm10 fsaverage Tue Jul 17 23:55:45 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.jacobian_white.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.jacobian_white.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh jacobian_white fwhm15 fsaverage Tue Jul 17 23:55:50 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.jacobian_white.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.jacobian_white.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh jacobian_white fwhm20 fsaverage Tue Jul 17 23:55:54 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.jacobian_white.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.jacobian_white.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh jacobian_white fwhm25 fsaverage Tue Jul 17 23:55:59 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.jacobian_white.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.jacobian_white.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh w-g.pct.mgh fwhm0 fsaverage Tue Jul 17 23:56:04 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm0.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.w-g.pct.mgh.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.w-g.pct.mgh.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh w-g.pct.mgh fwhm5 fsaverage Tue Jul 17 23:56:06 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm5.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.w-g.pct.mgh.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.w-g.pct.mgh.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh w-g.pct.mgh fwhm10 fsaverage Tue Jul 17 23:56:10 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm10.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.w-g.pct.mgh.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.w-g.pct.mgh.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh w-g.pct.mgh fwhm15 fsaverage Tue Jul 17 23:56:15 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm15.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.w-g.pct.mgh.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.w-g.pct.mgh.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh w-g.pct.mgh fwhm20 fsaverage Tue Jul 17 23:56:20 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm20.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.w-g.pct.mgh.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.w-g.pct.mgh.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh w-g.pct.mgh fwhm25 fsaverage Tue Jul 17 23:56:25 CDT 2018 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011 cd /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/assurgentMRI07112018/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm25.fsaverage.mgh --cortex sysname Linux hostname hhvrixnatp01 machine x86_64 user tomcat srcsubject = fsaverage srcval = rh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.w-g.pct.mgh.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /data/build/nnac/20180717_142006/assurgentMRI07112018/20180717022011/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.w-g.pct.mgh.fwhm25.fsaverage.mgh Started at Tue Jul 17 14:20:34 CDT 2018 Ended at Tue Jul 17 23:56:30 CDT 2018 #@#%# recon-all-run-time-hours 9.599 recon-all -s assurgentMRI07112018 finished without error at Tue Jul 17 23:56:30 CDT 2018 Fri Jul 27 10:18:56 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -gcareg #------------------------------------- #@# EM Registration Fri Jul 27 10:18:57 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri mri_em_register -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mri_em_register.dat -uns 3 -mask brainmask.mgz nu.mgz /space/nnac/alzheimer_center/pubsw/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/space/nnac/alzheimer_center/pubsw/freesurfer/average/RB_all_2016-05-10.vc700.gca'... average std = 7.3 using min determinant for regularization = 5.3 0 singular and 841 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 6.3 or > 503.7 total sample mean = 78.8 (1011 zeros) ************************************************ spacing=8, using 2830 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2830, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=12.0 skull bounding box = (63, 54, 34) --> (195, 162, 205) using (107, 90, 120) as brain centroid... mean wm in atlas = 107, using box (91,77,99) --> (123, 103,141) to find MRI wm before smoothing, mri peak at 105 robust fit to distribution - 106 +- 5.4 after smoothing, mri peak at 105, scaling input intensities by 1.019 scaling channel 0 by 1.01905 initial log_p = -4.318 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.110673 @ (-9.091, 9.091, -9.091) max log p = -4.060243 @ (4.545, -4.545, -4.545) max log p = -4.010061 @ (2.273, 2.273, 2.273) max log p = -3.966578 @ (-1.136, -1.136, 1.136) max log p = -3.953524 @ (0.568, 0.568, -1.705) max log p = -3.953524 @ (0.000, 0.000, 0.000) Found translation: (-2.8, 6.2, -11.9): log p = -3.954 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.782, old_max_log_p =-3.954 (thresh=-3.9) 1.07125 -0.11999 0.00000 1.48971; 0.18169 1.22023 0.00000 -34.68783; 0.00000 0.00000 1.00000 -11.93182; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.782, old_max_log_p =-3.782 (thresh=-3.8) 1.07125 -0.11999 0.00000 1.48971; 0.18169 1.22023 0.00000 -34.68783; 0.00000 0.00000 1.00000 -11.93182; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.653, old_max_log_p =-3.782 (thresh=-3.8) 1.06496 -0.15833 -0.00107 4.77655; 0.21368 1.19121 0.03331 -43.43222; -0.00561 -0.03771 0.98072 -6.66578; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.653, old_max_log_p =-3.653 (thresh=-3.6) 1.07099 -0.11795 -0.03205 3.24918; 0.17873 1.19571 0.03438 -37.60182; 0.02978 -0.04367 0.99854 -10.89694; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.605, old_max_log_p =-3.653 (thresh=-3.6) 1.06846 -0.12794 -0.02384 4.18246; 0.18670 1.19546 0.00153 -36.14499; 0.02679 -0.00350 0.99585 -15.48325; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.605, old_max_log_p =-3.605 (thresh=-3.6) 1.06846 -0.12794 -0.02384 4.18246; 0.18670 1.19546 0.00153 -36.14499; 0.02679 -0.00350 0.99585 -15.48325; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2830 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.06846 -0.12794 -0.02384 4.18246; 0.18670 1.19546 0.00153 -36.14499; 0.02679 -0.00350 0.99585 -15.48325; 0.00000 0.00000 0.00000 1.00000; nsamples 2830 Quasinewton: input matrix 1.06846 -0.12794 -0.02384 4.18246; 0.18670 1.19546 0.00153 -36.14499; 0.02679 -0.00350 0.99585 -15.48325; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 008: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.06846 -0.12794 -0.02384 4.18246; 0.18670 1.19546 0.00153 -36.14499; 0.02679 -0.00350 0.99585 -15.48325; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.605 (old=-4.318) transform before final EM align: 1.06846 -0.12794 -0.02384 4.18246; 0.18670 1.19546 0.00153 -36.14499; 0.02679 -0.00350 0.99585 -15.48325; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315557 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.06846 -0.12794 -0.02384 4.18246; 0.18670 1.19546 0.00153 -36.14499; 0.02679 -0.00350 0.99585 -15.48325; 0.00000 0.00000 0.00000 1.00000; nsamples 315557 Quasinewton: input matrix 1.06846 -0.12794 -0.02384 4.18246; 0.18670 1.19546 0.00153 -36.14499; 0.02679 -0.00350 0.99585 -15.48325; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 010: -log(p) = 4.0 tol 0.000000 final transform: 1.06846 -0.12794 -0.02384 4.18246; 0.18670 1.19546 0.00153 -36.14499; 0.02679 -0.00350 0.99585 -15.48325; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... mri_em_register utimesec 520.286601 mri_em_register stimesec 1.538895 mri_em_register ru_maxrss 598996 mri_em_register ru_ixrss 0 mri_em_register ru_idrss 0 mri_em_register ru_isrss 0 mri_em_register ru_minflt 158586 mri_em_register ru_majflt 7 mri_em_register ru_nswap 0 mri_em_register ru_inblock 163200 mri_em_register ru_oublock 24 mri_em_register ru_msgsnd 0 mri_em_register ru_msgrcv 0 mri_em_register ru_nsignals 0 mri_em_register ru_nvcsw 130 mri_em_register ru_nivcsw 9364 registration took 8 minutes and 42 seconds. Started at Fri Jul 27 10:18:56 CDT 2018 Ended at Fri Jul 27 10:27:40 CDT 2018 #@#%# recon-all-run-time-hours 0.146 recon-all -s pp_assurgent finished without error at Fri Jul 27 10:27:40 CDT 2018 Fri Jul 27 10:27:40 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -canorm #-------------------------------------- #@# CA Normalize Fri Jul 27 10:27:40 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /space/nnac/alzheimer_center/pubsw/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/space/nnac/alzheimer_center/pubsw/freesurfer/average/RB_all_2016-05-10.vc700.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=13.0 skull bounding box = (63, 54, 34) --> (195, 161, 205) using (107, 90, 120) as brain centroid... mean wm in atlas = 107, using box (91,77,99) --> (123, 103,141) to find MRI wm before smoothing, mri peak at 105 robust fit to distribution - 106 +- 5.4 after smoothing, mri peak at 105, scaling input intensities by 1.019 scaling channel 0 by 1.01905 using 246344 sample points... INFO: compute sample coordinates transform 1.06846 -0.12794 -0.02384 4.18246; 0.18670 1.19546 0.00153 -36.14499; 0.02679 -0.00350 0.99585 -15.48325; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (127, 52, 38) --> (193, 148, 207) Left_Cerebral_White_Matter: limiting intensities to 95.0 --> 132.0 0 of 2101 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (69, 56, 39) --> (132, 158, 208) Right_Cerebral_White_Matter: limiting intensities to 97.0 --> 132.0 0 of 1955 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (133, 125, 60) --> (180, 157, 115) Left_Cerebellum_White_Matter: limiting intensities to 103.0 --> 132.0 0 of 431 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (94, 125, 59) --> (133, 163, 117) Right_Cerebellum_White_Matter: limiting intensities to 109.0 --> 132.0 0 of 317 (0.0%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (117, 117, 95) --> (151, 176, 127) Brain_Stem: limiting intensities to 100.0 --> 132.0 0 of 608 (0.0%) samples deleted using 5412 total control points for intensity normalization... bias field = 0.905 +- 0.104 0 of 5412 control points discarded finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (127, 52, 38) --> (193, 148, 207) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 130.0 10 of 2831 (0.4%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (69, 56, 39) --> (132, 158, 208) Right_Cerebral_White_Matter: limiting intensities to 89.0 --> 130.0 0 of 2434 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (133, 125, 60) --> (180, 157, 115) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 130.0 10 of 514 (1.9%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (94, 125, 59) --> (133, 163, 117) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 130.0 4 of 341 (1.2%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (117, 117, 95) --> (151, 176, 127) Brain_Stem: limiting intensities to 88.0 --> 130.0 149 of 779 (19.1%) samples deleted using 6899 total control points for intensity normalization... bias field = 1.016 +- 0.065 0 of 6651 control points discarded finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (127, 52, 38) --> (193, 148, 207) Left_Cerebral_White_Matter: limiting intensities to 89.0 --> 131.0 3 of 2931 (0.1%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (69, 56, 39) --> (132, 158, 208) Right_Cerebral_White_Matter: limiting intensities to 90.0 --> 131.0 0 of 2420 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (133, 125, 60) --> (180, 157, 115) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 131.0 122 of 549 (22.2%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (94, 125, 59) --> (133, 163, 117) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 131.0 53 of 354 (15.0%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (117, 117, 95) --> (151, 176, 127) Brain_Stem: limiting intensities to 88.0 --> 131.0 436 of 796 (54.8%) samples deleted using 7050 total control points for intensity normalization... bias field = 1.014 +- 0.046 18 of 6342 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 1 minutes and 5 seconds. Started at Fri Jul 27 10:27:40 CDT 2018 Ended at Fri Jul 27 10:28:46 CDT 2018 #@#%# recon-all-run-time-hours 0.018 recon-all -s pp_assurgent finished without error at Fri Jul 27 10:28:46 CDT 2018 Fri Jul 27 10:28:46 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -careg #-------------------------------------- #@# CA Reg Fri Jul 27 10:28:46 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri mri_ca_register -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mri_ca_register.dat -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /space/nnac/alzheimer_center/pubsw/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_ca_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/space/nnac/alzheimer_center/pubsw/freesurfer/average/RB_all_2016-05-10.vc700.gca'... label assignment complete, 0 changed (0.00%) det(m_affine) = 1.30 (predicted orig area = 6.2) label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.039 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.996, neg=0, invalid=762 0001: dt=218.947368, rms=0.914 (8.218%), neg=0, invalid=762 0002: dt=261.706082, rms=0.889 (2.710%), neg=0, invalid=762 0003: dt=269.736585, rms=0.877 (1.402%), neg=0, invalid=762 0004: dt=183.466667, rms=0.870 (0.753%), neg=0, invalid=762 0005: dt=517.888000, rms=0.859 (1.248%), neg=0, invalid=762 0006: dt=133.714286, rms=0.855 (0.485%), neg=0, invalid=762 0007: dt=2071.552000, rms=0.832 (2.678%), neg=0, invalid=762 0008: dt=129.472000, rms=0.830 (0.258%), neg=0, invalid=762 0009: dt=1775.616000, rms=0.825 (0.624%), neg=0, invalid=762 0010: dt=295.936000, rms=0.819 (0.717%), neg=0, invalid=762 0011: dt=110.976000, rms=0.818 (0.096%), neg=0, invalid=762 0012: dt=110.976000, rms=0.818 (0.064%), neg=0, invalid=762 0013: dt=110.976000, rms=0.817 (0.121%), neg=0, invalid=762 0014: dt=110.976000, rms=0.815 (0.185%), neg=0, invalid=762 0015: dt=110.976000, rms=0.813 (0.248%), neg=0, invalid=762 0016: dt=110.976000, rms=0.811 (0.289%), neg=0, invalid=762 0017: dt=110.976000, rms=0.809 (0.295%), neg=0, invalid=762 0018: dt=110.976000, rms=0.806 (0.298%), neg=0, invalid=762 0019: dt=110.976000, rms=0.804 (0.305%), neg=0, invalid=762 0020: dt=110.976000, rms=0.801 (0.299%), neg=0, invalid=762 0021: dt=110.976000, rms=0.799 (0.331%), neg=0, invalid=762 0022: dt=110.976000, rms=0.796 (0.350%), neg=0, invalid=762 0023: dt=110.976000, rms=0.793 (0.345%), neg=0, invalid=762 0024: dt=110.976000, rms=0.791 (0.319%), neg=0, invalid=762 0025: dt=110.976000, rms=0.788 (0.294%), neg=0, invalid=762 0026: dt=110.976000, rms=0.786 (0.284%), neg=0, invalid=762 0027: dt=110.976000, rms=0.784 (0.280%), neg=0, invalid=762 0028: dt=110.976000, rms=0.782 (0.261%), neg=0, invalid=762 0029: dt=110.976000, rms=0.780 (0.251%), neg=0, invalid=762 0030: dt=110.976000, rms=0.778 (0.231%), neg=0, invalid=762 0031: dt=110.976000, rms=0.776 (0.214%), neg=0, invalid=762 0032: dt=110.976000, rms=0.775 (0.224%), neg=0, invalid=762 0033: dt=110.976000, rms=0.773 (0.219%), neg=0, invalid=762 0034: dt=110.976000, rms=0.771 (0.199%), neg=0, invalid=762 0035: dt=110.976000, rms=0.770 (0.176%), neg=0, invalid=762 0036: dt=110.976000, rms=0.769 (0.151%), neg=0, invalid=762 0037: dt=110.976000, rms=0.768 (0.139%), neg=0, invalid=762 0038: dt=110.976000, rms=0.767 (0.143%), neg=0, invalid=762 0039: dt=110.976000, rms=0.765 (0.150%), neg=0, invalid=762 0040: dt=110.976000, rms=0.764 (0.146%), neg=0, invalid=762 0041: dt=110.976000, rms=0.763 (0.125%), neg=0, invalid=762 0042: dt=110.976000, rms=0.763 (0.105%), neg=0, invalid=762 0043: dt=110.976000, rms=0.762 (0.091%), neg=0, invalid=762 0044: dt=2071.552000, rms=0.760 (0.211%), neg=0, invalid=762 0045: dt=1.734000, rms=0.760 (-0.003%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.761, neg=0, invalid=762 0046: dt=73.984000, rms=0.760 (0.186%), neg=0, invalid=762 0047: dt=92.480000, rms=0.760 (0.018%), neg=0, invalid=762 0048: dt=92.480000, rms=0.760 (0.029%), neg=0, invalid=762 0049: dt=92.480000, rms=0.759 (0.036%), neg=0, invalid=762 0050: dt=92.480000, rms=0.759 (0.031%), neg=0, invalid=762 0051: dt=92.480000, rms=0.759 (0.038%), neg=0, invalid=762 0052: dt=92.480000, rms=0.759 (0.040%), neg=0, invalid=762 0053: dt=92.480000, rms=0.758 (0.023%), neg=0, invalid=762 setting smoothness coefficient to 0.154 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.766, neg=0, invalid=762 0054: dt=167.436031, rms=0.755 (1.467%), neg=0, invalid=762 0055: dt=199.237251, rms=0.739 (2.179%), neg=0, invalid=762 0056: dt=72.796579, rms=0.730 (1.160%), neg=0, invalid=762 0057: dt=331.776000, rms=0.722 (1.076%), neg=0, invalid=762 0058: dt=70.602105, rms=0.711 (1.483%), neg=0, invalid=762 0059: dt=103.680000, rms=0.709 (0.325%), neg=0, invalid=762 0060: dt=124.416000, rms=0.705 (0.601%), neg=0, invalid=762 0061: dt=36.288000, rms=0.703 (0.245%), neg=0, invalid=762 0062: dt=36.288000, rms=0.702 (0.120%), neg=0, invalid=762 0063: dt=36.288000, rms=0.701 (0.221%), neg=0, invalid=762 0064: dt=36.288000, rms=0.698 (0.349%), neg=0, invalid=762 0065: dt=36.288000, rms=0.695 (0.429%), neg=0, invalid=762 0066: dt=36.288000, rms=0.692 (0.463%), neg=0, invalid=762 0067: dt=36.288000, rms=0.689 (0.478%), neg=0, invalid=762 0068: dt=36.288000, rms=0.686 (0.473%), neg=0, invalid=762 0069: dt=36.288000, rms=0.682 (0.447%), neg=0, invalid=762 0070: dt=36.288000, rms=0.680 (0.408%), neg=0, invalid=762 0071: dt=36.288000, rms=0.677 (0.376%), neg=0, invalid=762 0072: dt=36.288000, rms=0.675 (0.351%), neg=0, invalid=762 0073: dt=36.288000, rms=0.673 (0.298%), neg=0, invalid=762 0074: dt=36.288000, rms=0.671 (0.254%), neg=0, invalid=762 0075: dt=36.288000, rms=0.669 (0.241%), neg=0, invalid=762 0076: dt=36.288000, rms=0.668 (0.205%), neg=0, invalid=762 0077: dt=36.288000, rms=0.667 (0.189%), neg=0, invalid=762 0078: dt=36.288000, rms=0.666 (0.183%), neg=0, invalid=762 0079: dt=36.288000, rms=0.664 (0.174%), neg=0, invalid=762 0080: dt=36.288000, rms=0.663 (0.155%), neg=0, invalid=762 0081: dt=36.288000, rms=0.662 (0.147%), neg=0, invalid=762 0082: dt=36.288000, rms=0.662 (0.124%), neg=0, invalid=762 0083: dt=36.288000, rms=0.661 (0.120%), neg=0, invalid=762 0084: dt=103.680000, rms=0.661 (0.032%), neg=0, invalid=762 0085: dt=51.840000, rms=0.660 (0.051%), neg=0, invalid=762 0086: dt=51.840000, rms=0.660 (0.019%), neg=0, invalid=762 0087: dt=51.840000, rms=0.660 (0.028%), neg=0, invalid=762 0088: dt=51.840000, rms=0.660 (0.040%), neg=0, invalid=762 0089: dt=51.840000, rms=0.660 (0.012%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.662, neg=0, invalid=762 0090: dt=36.288000, rms=0.659 (0.405%), neg=0, invalid=762 0091: dt=36.288000, rms=0.659 (0.027%), neg=0, invalid=762 0092: dt=36.288000, rms=0.659 (0.012%), neg=0, invalid=762 0093: dt=36.288000, rms=0.659 (-0.001%), neg=0, invalid=762 setting smoothness coefficient to 0.588 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.690, neg=0, invalid=762 0094: dt=0.000000, rms=0.688 (0.318%), neg=0, invalid=762 0095: dt=0.000000, rms=0.688 (0.000%), neg=0, invalid=762 0096: dt=0.250000, rms=0.688 (-0.004%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.690, neg=0, invalid=762 0097: dt=0.000000, rms=0.688 (0.318%), neg=0, invalid=762 0098: dt=0.000000, rms=0.688 (0.000%), neg=0, invalid=762 0099: dt=0.250000, rms=0.688 (-0.005%), neg=0, invalid=762 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.778, neg=0, invalid=762 0100: dt=4.548936, rms=0.757 (2.618%), neg=0, invalid=762 0101: dt=1.928571, rms=0.757 (0.085%), neg=0, invalid=762 0102: dt=1.928571, rms=0.757 (-0.065%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.758, neg=0, invalid=762 0103: dt=0.000000, rms=0.757 (0.232%), neg=0, invalid=762 0104: dt=0.000000, rms=0.757 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 5.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.855, neg=0, invalid=762 0105: dt=1.536000, rms=0.847 (0.921%), neg=0, invalid=762 0106: dt=1.792000, rms=0.843 (0.480%), neg=0, invalid=762 0107: dt=0.384000, rms=0.843 (0.025%), neg=0, invalid=762 0108: dt=0.384000, rms=0.842 (0.007%), neg=0, invalid=762 0109: dt=0.384000, rms=0.842 (-0.020%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.844, neg=0, invalid=762 0110: dt=0.768000, rms=0.842 (0.220%), neg=0, invalid=762 0111: dt=0.448000, rms=0.842 (0.011%), neg=0, invalid=762 0112: dt=0.448000, rms=0.842 (0.003%), neg=0, invalid=762 0113: dt=0.448000, rms=0.842 (-0.032%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 10.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.764, neg=0, invalid=762 0114: dt=1.132719, rms=0.731 (4.237%), neg=0, invalid=762 0115: dt=0.112000, rms=0.729 (0.271%), neg=0, invalid=762 0116: dt=0.024000, rms=0.729 (0.007%), neg=0, invalid=762 0117: dt=0.024000, rms=0.729 (-0.007%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.731, neg=0, invalid=762 0118: dt=0.024000, rms=0.729 (0.194%), neg=0, invalid=762 0119: dt=0.000000, rms=0.729 (-0.000%), neg=0, invalid=762 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.10027 (20) mri peak = 0.12756 (15) Left_Lateral_Ventricle (4): linear fit = 0.69 x + 0.0 (2286 voxels, overlap=0.414) Left_Lateral_Ventricle (4): linear fit = 0.69 x + 0.0 (2286 voxels, peak = 14), gca=13.7 gca peak = 0.15565 (16) mri peak = 0.09094 (19) Right_Lateral_Ventricle (43): linear fit = 1.18 x + 0.0 (1726 voxels, overlap=0.820) Right_Lateral_Ventricle (43): linear fit = 1.18 x + 0.0 (1726 voxels, peak = 19), gca=19.0 gca peak = 0.26829 (96) mri peak = 0.07293 (104) Right_Pallidum (52): linear fit = 1.10 x + 0.0 (818 voxels, overlap=0.041) Right_Pallidum (52): linear fit = 1.10 x + 0.0 (818 voxels, peak = 105), gca=105.1 gca peak = 0.20183 (93) mri peak = 0.09451 (99) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (774 voxels, overlap=1.007) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (774 voxels, peak = 97), gca=97.2 gca peak = 0.21683 (55) mri peak = 0.09961 (65) Right_Hippocampus (53): linear fit = 1.15 x + 0.0 (367 voxels, overlap=0.579) Right_Hippocampus (53): linear fit = 1.15 x + 0.0 (367 voxels, peak = 64), gca=63.5 gca peak = 0.30730 (58) mri peak = 0.06215 (62) Left_Hippocampus (17): linear fit = 1.16 x + 0.0 (514 voxels, overlap=0.999) Left_Hippocampus (17): linear fit = 1.16 x + 0.0 (514 voxels, peak = 68), gca=67.6 gca peak = 0.11430 (101) mri peak = 0.08680 (104) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (44369 voxels, overlap=0.687) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (44369 voxels, peak = 107), gca=106.6 gca peak = 0.12076 (102) mri peak = 0.07444 (106) Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (47742 voxels, overlap=0.779) Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (47742 voxels, peak = 106), gca=105.6 gca peak = 0.14995 (59) mri peak = 0.02382 (71) Left_Cerebral_Cortex (3): linear fit = 1.35 x + 0.0 (18569 voxels, overlap=0.000) Left_Cerebral_Cortex (3): linear fit = 1.35 x + 0.0 (18569 voxels, peak = 79), gca=79.4 gca peak = 0.15082 (58) mri peak = 0.02611 (79) Right_Cerebral_Cortex (42): linear fit = 1.35 x + 0.0 (16487 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 1.35 x + 0.0 (16487 voxels, peak = 78), gca=78.0 gca peak = 0.14161 (67) mri peak = 0.04478 (56) Right_Caudate (50): linear fit = 1.05 x + 0.0 (835 voxels, overlap=0.966) Right_Caudate (50): linear fit = 1.05 x + 0.0 (835 voxels, peak = 71), gca=70.7 gca peak = 0.15243 (71) mri peak = 0.10028 (76) Left_Caudate (11): linear fit = 1.09 x + 0.0 (498 voxels, overlap=0.652) Left_Caudate (11): linear fit = 1.09 x + 0.0 (498 voxels, peak = 77), gca=77.0 gca peak = 0.13336 (57) mri peak = 0.04787 (59) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (24562 voxels, overlap=0.745) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (24562 voxels, peak = 64), gca=63.6 gca peak = 0.13252 (56) mri peak = 0.04464 (63) Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (27891 voxels, overlap=0.670) Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (27891 voxels, peak = 62), gca=62.4 gca peak = 0.18181 (84) mri peak = 0.11781 (89) Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (8320 voxels, overlap=0.409) Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (8320 voxels, peak = 90), gca=90.3 gca peak = 0.20573 (83) mri peak = 0.12430 (89) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (6958 voxels, overlap=0.117) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (6958 voxels, peak = 89), gca=89.2 gca peak = 0.21969 (57) mri peak = 0.12652 (67) Left_Amygdala (18): linear fit = 1.16 x + 0.0 (410 voxels, overlap=0.050) Left_Amygdala (18): linear fit = 1.16 x + 0.0 (410 voxels, peak = 66), gca=66.4 gca peak = 0.39313 (56) mri peak = 0.07192 (60) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (408 voxels, overlap=0.591) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (408 voxels, peak = 59), gca=58.5 gca peak = 0.14181 (85) mri peak = 0.06720 (88) Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (4021 voxels, overlap=0.851) Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (4021 voxels, peak = 87), gca=87.1 gca peak = 0.11978 (83) mri peak = 0.07472 (89) Right_Thalamus_Proper (49): linear fit = 1.08 x + 0.0 (2859 voxels, overlap=0.626) Right_Thalamus_Proper (49): linear fit = 1.08 x + 0.0 (2859 voxels, peak = 89), gca=89.2 gca peak = 0.13399 (79) mri peak = 0.10198 (82) Left_Putamen (12): linear fit = 1.03 x + 0.0 (2246 voxels, overlap=0.864) Left_Putamen (12): linear fit = 1.03 x + 0.0 (2246 voxels, peak = 82), gca=81.8 gca peak = 0.14159 (79) mri peak = 0.06268 (90) Right_Putamen (51): linear fit = 1.14 x + 0.0 (2257 voxels, overlap=0.049) Right_Putamen (51): linear fit = 1.14 x + 0.0 (2257 voxels, peak = 90), gca=90.5 gca peak = 0.10025 (80) mri peak = 0.08037 (86) Brain_Stem (16): linear fit = 1.10 x + 0.0 (11242 voxels, overlap=0.402) Brain_Stem (16): linear fit = 1.10 x + 0.0 (11242 voxels, peak = 88), gca=87.6 gca peak = 0.13281 (86) mri peak = 0.13447 (101) Right_VentralDC (60): linear fit = 1.16 x + 0.0 (823 voxels, overlap=0.018) Right_VentralDC (60): linear fit = 1.16 x + 0.0 (823 voxels, peak = 100), gca=100.2 gca peak = 0.12801 (89) mri peak = 0.10571 (100) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (1134 voxels, overlap=0.028) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (1134 voxels, peak = 100), gca=100.1 gca peak = 0.20494 (23) mri peak = 0.22749 (20) Third_Ventricle (14): linear fit = 0.77 x + 0.0 (104 voxels, overlap=0.559) Third_Ventricle (14): linear fit = 0.77 x + 0.0 (104 voxels, peak = 18), gca=17.8 gca peak = 0.15061 (21) mri peak = 0.14227 (21) Fourth_Ventricle (15): linear fit = 0.98 x + 0.0 (416 voxels, overlap=0.681) Fourth_Ventricle (15): linear fit = 0.98 x + 0.0 (416 voxels, peak = 20), gca=20.5 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.18056 (32) gca peak Left_Thalamus = 0.64095 (94) gca peak CSF = 0.20999 (34) gca peak Left_Accumbens_area = 0.39030 (62) gca peak Left_undetermined = 0.95280 (25) gca peak Left_vessel = 0.67734 (53) gca peak Left_choroid_plexus = 0.09433 (44) gca peak Right_Inf_Lat_Vent = 0.23544 (26) gca peak Right_Accumbens_area = 0.30312 (64) gca peak Right_vessel = 0.46315 (51) gca peak Right_choroid_plexus = 0.14086 (44) gca peak Fifth_Ventricle = 0.51669 (36) gca peak WM_hypointensities = 0.09722 (76) gca peak non_WM_hypointensities = 0.11899 (47) gca peak Optic_Chiasm = 0.39033 (72) label assignment complete, 0 changed (0.00%) not using caudate to estimate GM means estimating mean gm scale to be 1.20 x + 0.0 estimating mean wm scale to be 1.04 x + 0.0 estimating mean csf scale to be 0.90 x + 0.0 Right_Pallidum too bright - rescaling by 0.979 (from 1.095) to 102.9 (was 105.1) saving intensity scales to talairach.label_intensities.txt **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.837, neg=0, invalid=762 0120: dt=56.794268, rms=0.827 (1.139%), neg=0, invalid=762 0121: dt=32.368000, rms=0.827 (0.057%), neg=0, invalid=762 0122: dt=18.496000, rms=0.827 (0.015%), neg=0, invalid=762 0123: dt=18.496000, rms=0.826 (0.009%), neg=0, invalid=762 0124: dt=18.496000, rms=0.826 (-0.010%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.828, neg=0, invalid=762 0125: dt=369.920000, rms=0.817 (1.292%), neg=0, invalid=762 0126: dt=129.472000, rms=0.812 (0.616%), neg=0, invalid=762 0127: dt=92.480000, rms=0.812 (0.065%), neg=0, invalid=762 0128: dt=2071.552000, rms=0.796 (1.905%), neg=0, invalid=762 0129: dt=73.984000, rms=0.795 (0.195%), neg=0, invalid=762 0130: dt=73.984000, rms=0.794 (0.030%), neg=0, invalid=762 0131: dt=73.984000, rms=0.794 (0.040%), neg=0, invalid=762 0132: dt=73.984000, rms=0.794 (0.068%), neg=0, invalid=762 0133: dt=73.984000, rms=0.793 (0.093%), neg=0, invalid=762 0134: dt=73.984000, rms=0.792 (0.122%), neg=0, invalid=762 0135: dt=73.984000, rms=0.791 (0.139%), neg=0, invalid=762 0136: dt=73.984000, rms=0.790 (0.152%), neg=0, invalid=762 0137: dt=73.984000, rms=0.788 (0.164%), neg=0, invalid=762 0138: dt=73.984000, rms=0.787 (0.180%), neg=0, invalid=762 0139: dt=73.984000, rms=0.785 (0.197%), neg=0, invalid=762 0140: dt=73.984000, rms=0.784 (0.212%), neg=0, invalid=762 0141: dt=73.984000, rms=0.782 (0.213%), neg=0, invalid=762 0142: dt=73.984000, rms=0.780 (0.202%), neg=0, invalid=762 0143: dt=73.984000, rms=0.779 (0.182%), neg=0, invalid=762 0144: dt=73.984000, rms=0.778 (0.168%), neg=0, invalid=762 0145: dt=73.984000, rms=0.776 (0.165%), neg=0, invalid=762 0146: dt=73.984000, rms=0.775 (0.172%), neg=0, invalid=762 0147: dt=73.984000, rms=0.774 (0.177%), neg=0, invalid=762 0148: dt=73.984000, rms=0.772 (0.172%), neg=0, invalid=762 0149: dt=73.984000, rms=0.771 (0.157%), neg=0, invalid=762 0150: dt=73.984000, rms=0.770 (0.137%), neg=0, invalid=762 0151: dt=73.984000, rms=0.770 (0.006%), neg=0, invalid=762 0152: dt=73.984000, rms=0.770 (0.014%), neg=0, invalid=762 0153: dt=73.984000, rms=0.770 (0.025%), neg=0, invalid=762 0154: dt=73.984000, rms=0.769 (0.037%), neg=0, invalid=762 0155: dt=73.984000, rms=0.769 (0.050%), neg=0, invalid=762 0156: dt=73.984000, rms=0.769 (0.059%), neg=0, invalid=762 0157: dt=73.984000, rms=0.768 (0.065%), neg=0, invalid=762 0158: dt=73.984000, rms=0.768 (0.067%), neg=0, invalid=762 0159: dt=73.984000, rms=0.767 (0.070%), neg=0, invalid=762 0160: dt=73.984000, rms=0.766 (0.072%), neg=0, invalid=762 0161: dt=73.984000, rms=0.766 (0.073%), neg=0, invalid=762 0162: dt=73.984000, rms=0.765 (0.072%), neg=0, invalid=762 0163: dt=73.984000, rms=0.765 (0.069%), neg=0, invalid=762 0164: dt=73.984000, rms=0.765 (0.009%), neg=0, invalid=762 0165: dt=36.992000, rms=0.765 (0.005%), neg=0, invalid=762 0166: dt=32.368000, rms=0.765 (0.004%), neg=0, invalid=762 0167: dt=2.023000, rms=0.765 (0.000%), neg=0, invalid=762 0168: dt=1.011500, rms=0.765 (0.000%), neg=0, invalid=762 0169: dt=0.252875, rms=0.765 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.767, neg=0, invalid=762 0170: dt=0.000000, rms=0.765 (0.253%), neg=0, invalid=762 0171: dt=0.000000, rms=0.765 (0.000%), neg=0, invalid=762 0172: dt=0.000879, rms=0.765 (0.000%), neg=0, invalid=762 0173: dt=0.000439, rms=0.765 (0.000%), neg=0, invalid=762 0174: dt=0.000220, rms=0.765 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.767, neg=0, invalid=762 0175: dt=0.000000, rms=0.765 (0.253%), neg=0, invalid=762 0176: dt=0.000000, rms=0.765 (0.000%), neg=0, invalid=762 0177: dt=0.000014, rms=0.765 (0.000%), neg=0, invalid=762 0178: dt=0.000007, rms=0.765 (0.000%), neg=0, invalid=762 0179: dt=0.000002, rms=0.765 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.769, neg=0, invalid=762 0180: dt=0.000000, rms=0.767 (0.252%), neg=0, invalid=762 0181: dt=0.000000, rms=0.767 (0.000%), neg=0, invalid=762 0182: dt=0.000000, rms=0.767 (0.000%), neg=0, invalid=762 0183: dt=0.000000, rms=0.767 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.769, neg=0, invalid=762 0184: dt=0.000000, rms=0.767 (0.252%), neg=0, invalid=762 0185: dt=0.000000, rms=0.767 (0.000%), neg=0, invalid=762 0186: dt=0.000000, rms=0.767 (-0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.774, neg=0, invalid=762 0187: dt=1.008000, rms=0.760 (1.765%), neg=0, invalid=762 0188: dt=1.008000, rms=0.749 (1.441%), neg=0, invalid=762 0189: dt=0.216000, rms=0.747 (0.294%), neg=0, invalid=762 0190: dt=0.015750, rms=0.747 (0.022%), neg=0, invalid=762 0191: dt=0.003938, rms=0.747 (0.005%), neg=0, invalid=762 0192: dt=0.001969, rms=0.747 (0.003%), neg=0, invalid=762 0193: dt=0.000492, rms=0.747 (0.001%), neg=0, invalid=762 0194: dt=0.000246, rms=0.747 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.749, neg=0, invalid=762 0195: dt=0.000000, rms=0.747 (0.247%), neg=0, invalid=762 0196: dt=0.000000, rms=0.747 (0.000%), neg=0, invalid=762 0197: dt=0.000146, rms=0.747 (0.000%), neg=0, invalid=762 0198: dt=0.000018, rms=0.747 (0.000%), neg=0, invalid=762 0199: dt=0.000005, rms=0.747 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.761, neg=0, invalid=762 0200: dt=1.792000, rms=0.726 (4.630%), neg=0, invalid=762 0201: dt=1.792000, rms=0.707 (2.643%), neg=0, invalid=762 0202: dt=1.792000, rms=0.695 (1.565%), neg=0, invalid=762 0203: dt=1.792000, rms=0.689 (0.962%), neg=0, invalid=762 0204: dt=1.280000, rms=0.686 (0.467%), neg=0, invalid=762 0205: dt=1.792000, rms=0.682 (0.519%), neg=0, invalid=762 0206: dt=1.536000, rms=0.680 (0.326%), neg=0, invalid=762 0207: dt=1.280000, rms=0.678 (0.216%), neg=0, invalid=762 0208: dt=1.280000, rms=0.677 (0.190%), neg=0, invalid=762 0209: dt=1.536000, rms=0.676 (0.190%), neg=0, invalid=762 0210: dt=1.280000, rms=0.675 (0.136%), neg=0, invalid=762 0211: dt=1.536000, rms=0.674 (0.141%), neg=0, invalid=762 0212: dt=1.536000, rms=0.673 (0.122%), neg=0, invalid=762 0213: dt=1.536000, rms=0.672 (0.106%), neg=0, invalid=762 0214: dt=1.280000, rms=0.672 (0.079%), neg=0, invalid=762 0215: dt=1.792000, rms=0.671 (0.100%), neg=0, invalid=762 0216: dt=1.280000, rms=0.671 (0.060%), neg=0, invalid=762 0217: dt=1.536000, rms=0.670 (0.068%), neg=0, invalid=762 0218: dt=1.280000, rms=0.670 (0.052%), neg=0, invalid=762 0219: dt=1.280000, rms=0.670 (0.046%), neg=0, invalid=762 0220: dt=1.280000, rms=0.669 (0.043%), neg=0, invalid=762 0221: dt=1.280000, rms=0.669 (0.037%), neg=0, invalid=762 0222: dt=1.280000, rms=0.669 (0.070%), neg=0, invalid=762 0223: dt=1.280000, rms=0.668 (0.093%), neg=0, invalid=762 0224: dt=1.280000, rms=0.667 (0.104%), neg=0, invalid=762 0225: dt=1.280000, rms=0.667 (0.019%), neg=0, invalid=762 0226: dt=1.280000, rms=0.667 (0.025%), neg=0, invalid=762 0227: dt=1.280000, rms=0.667 (0.036%), neg=0, invalid=762 0228: dt=1.280000, rms=0.666 (0.045%), neg=0, invalid=762 0229: dt=1.280000, rms=0.666 (0.048%), neg=0, invalid=762 0230: dt=1.280000, rms=0.666 (0.050%), neg=0, invalid=762 0231: dt=1.280000, rms=0.666 (0.003%), neg=0, invalid=762 0232: dt=1.280000, rms=0.666 (0.006%), neg=0, invalid=762 0233: dt=1.280000, rms=0.666 (0.008%), neg=0, invalid=762 0234: dt=1.280000, rms=0.666 (0.008%), neg=0, invalid=762 0235: dt=1.536000, rms=0.666 (0.005%), neg=0, invalid=762 0236: dt=1.536000, rms=0.666 (0.005%), neg=0, invalid=762 0237: dt=1.536000, rms=0.666 (0.004%), neg=0, invalid=762 0238: dt=1.536000, rms=0.665 (0.009%), neg=0, invalid=762 0239: dt=1.536000, rms=0.665 (0.014%), neg=0, invalid=762 0240: dt=1.536000, rms=0.665 (0.012%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.666, neg=0, invalid=762 0241: dt=1.792000, rms=0.664 (0.390%), neg=0, invalid=762 0242: dt=1.536000, rms=0.664 (0.039%), neg=0, invalid=762 0243: dt=0.768000, rms=0.664 (-0.001%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.646, neg=0, invalid=762 0244: dt=0.320000, rms=0.628 (2.756%), neg=0, invalid=762 0245: dt=0.112000, rms=0.624 (0.578%), neg=0, invalid=762 0246: dt=0.112000, rms=0.621 (0.514%), neg=0, invalid=762 0247: dt=0.112000, rms=0.618 (0.453%), neg=0, invalid=762 0248: dt=0.112000, rms=0.616 (0.401%), neg=0, invalid=762 0249: dt=0.112000, rms=0.613 (0.356%), neg=0, invalid=762 0250: dt=0.112000, rms=0.611 (0.318%), neg=0, invalid=762 0251: dt=0.112000, rms=0.610 (0.283%), neg=0, invalid=762 0252: dt=0.112000, rms=0.608 (0.255%), neg=0, invalid=762 0253: dt=0.112000, rms=0.607 (0.233%), neg=0, invalid=762 0254: dt=0.112000, rms=0.605 (0.207%), neg=0, invalid=762 0255: dt=0.173611, rms=0.604 (0.296%), neg=0, invalid=762 0256: dt=0.169643, rms=0.602 (0.249%), neg=0, invalid=762 0257: dt=0.112000, rms=0.601 (0.147%), neg=0, invalid=762 0258: dt=0.112000, rms=0.601 (0.134%), neg=0, invalid=762 0259: dt=0.112000, rms=0.600 (0.128%), neg=0, invalid=762 0260: dt=0.112000, rms=0.599 (0.116%), neg=0, invalid=762 0261: dt=0.112000, rms=0.598 (0.111%), neg=0, invalid=762 0262: dt=0.112000, rms=0.598 (0.101%), neg=0, invalid=762 0263: dt=0.112000, rms=0.597 (0.097%), neg=0, invalid=762 0264: dt=0.112000, rms=0.597 (0.089%), neg=0, invalid=762 0265: dt=0.112000, rms=0.596 (0.088%), neg=0, invalid=762 0266: dt=0.112000, rms=0.596 (0.079%), neg=0, invalid=762 0267: dt=0.112000, rms=0.595 (0.078%), neg=0, invalid=762 0268: dt=0.112000, rms=0.595 (0.072%), neg=0, invalid=762 0269: dt=0.112000, rms=0.594 (0.070%), neg=0, invalid=762 0270: dt=0.112000, rms=0.594 (0.065%), neg=0, invalid=762 0271: dt=0.112000, rms=0.594 (0.061%), neg=0, invalid=762 0272: dt=0.112000, rms=0.593 (0.059%), neg=0, invalid=762 0273: dt=0.112000, rms=0.593 (0.055%), neg=0, invalid=762 0274: dt=0.112000, rms=0.593 (0.056%), neg=0, invalid=762 0275: dt=0.112000, rms=0.592 (0.049%), neg=0, invalid=762 0276: dt=0.112000, rms=0.592 (0.051%), neg=0, invalid=762 0277: dt=0.112000, rms=0.591 (0.094%), neg=0, invalid=762 0278: dt=0.112000, rms=0.591 (0.121%), neg=0, invalid=762 0279: dt=0.112000, rms=0.590 (0.150%), neg=0, invalid=762 0280: dt=0.112000, rms=0.589 (0.165%), neg=0, invalid=762 0281: dt=0.112000, rms=0.588 (0.172%), neg=0, invalid=762 0282: dt=0.112000, rms=0.587 (0.175%), neg=0, invalid=762 0283: dt=0.112000, rms=0.586 (0.165%), neg=0, invalid=762 0284: dt=0.112000, rms=0.585 (0.151%), neg=0, invalid=762 0285: dt=0.112000, rms=0.584 (0.141%), neg=0, invalid=762 0286: dt=0.112000, rms=0.583 (0.123%), neg=0, invalid=762 0287: dt=0.112000, rms=0.583 (0.101%), neg=0, invalid=762 0288: dt=0.112000, rms=0.582 (0.092%), neg=0, invalid=762 0289: dt=0.112000, rms=0.582 (0.070%), neg=0, invalid=762 0290: dt=0.112000, rms=0.582 (0.049%), neg=0, invalid=762 0291: dt=0.112000, rms=0.581 (0.043%), neg=0, invalid=762 0292: dt=0.112000, rms=0.581 (0.029%), neg=0, invalid=762 0293: dt=0.112000, rms=0.581 (0.023%), neg=0, invalid=762 0294: dt=0.112000, rms=0.581 (0.013%), neg=0, invalid=762 0295: dt=0.000000, rms=0.581 (-0.002%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.582, neg=0, invalid=762 0296: dt=0.112000, rms=0.580 (0.391%), neg=0, invalid=762 0297: dt=0.118056, rms=0.579 (0.158%), neg=0, invalid=762 0298: dt=0.112000, rms=0.578 (0.112%), neg=0, invalid=762 0299: dt=0.112000, rms=0.578 (0.080%), neg=0, invalid=762 0300: dt=0.112000, rms=0.577 (0.060%), neg=0, invalid=762 0301: dt=0.112000, rms=0.577 (0.041%), neg=0, invalid=762 0302: dt=0.112000, rms=0.577 (0.028%), neg=0, invalid=762 0303: dt=0.112000, rms=0.577 (0.045%), neg=0, invalid=762 0304: dt=0.112000, rms=0.577 (0.039%), neg=0, invalid=762 0305: dt=0.112000, rms=0.576 (0.014%), neg=0, invalid=762 0306: dt=0.112000, rms=0.577 (-0.024%), neg=0, invalid=762 0307: dt=0.000000, rms=0.577 (0.000%), neg=0, invalid=762 label assignment complete, 0 changed (0.00%) ********************* ALLOWING NEGATIVE NODES IN DEFORMATION******************************** **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.573, neg=0, invalid=762 0308: dt=1.156000, rms=0.572 (0.196%), neg=0, invalid=762 0309: dt=0.072250, rms=0.572 (0.001%), neg=0, invalid=762 0310: dt=0.072250, rms=0.572 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.573, neg=0, invalid=762 0311: dt=73.984000, rms=0.572 (0.220%), neg=0, invalid=762 0312: dt=295.936000, rms=0.571 (0.064%), neg=0, invalid=762 0313: dt=295.936000, rms=0.571 (-0.223%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.573, neg=0, invalid=762 0314: dt=63.294766, rms=0.568 (0.773%), neg=0, invalid=762 0315: dt=98.506912, rms=0.566 (0.380%), neg=0, invalid=762 Fri Jul 27 11:47:41 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -careg Fri Jul 27 11:48:12 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -careg #-------------------------------------- #@# CA Reg Fri Jul 27 11:48:12 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri mri_ca_register -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mri_ca_register.dat -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /space/nnac/alzheimer_center/pubsw/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_ca_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/space/nnac/alzheimer_center/pubsw/freesurfer/average/RB_all_2016-05-10.vc700.gca'... label assignment complete, 0 changed (0.00%) det(m_affine) = 1.30 (predicted orig area = 6.2) label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.039 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.996, neg=0, invalid=762 0001: dt=218.947368, rms=0.914 (8.218%), neg=0, invalid=762 0002: dt=261.706082, rms=0.889 (2.710%), neg=0, invalid=762 0003: dt=269.736585, rms=0.877 (1.402%), neg=0, invalid=762 0004: dt=183.466667, rms=0.870 (0.753%), neg=0, invalid=762 0005: dt=517.888000, rms=0.859 (1.248%), neg=0, invalid=762 0006: dt=133.714286, rms=0.855 (0.485%), neg=0, invalid=762 0007: dt=2071.552000, rms=0.832 (2.678%), neg=0, invalid=762 0008: dt=129.472000, rms=0.830 (0.258%), neg=0, invalid=762 0009: dt=1775.616000, rms=0.825 (0.624%), neg=0, invalid=762 0010: dt=295.936000, rms=0.819 (0.717%), neg=0, invalid=762 0011: dt=110.976000, rms=0.818 (0.096%), neg=0, invalid=762 0012: dt=110.976000, rms=0.818 (0.064%), neg=0, invalid=762 0013: dt=110.976000, rms=0.817 (0.121%), neg=0, invalid=762 0014: dt=110.976000, rms=0.815 (0.185%), neg=0, invalid=762 0015: dt=110.976000, rms=0.813 (0.248%), neg=0, invalid=762 0016: dt=110.976000, rms=0.811 (0.289%), neg=0, invalid=762 0017: dt=110.976000, rms=0.809 (0.295%), neg=0, invalid=762 0018: dt=110.976000, rms=0.806 (0.298%), neg=0, invalid=762 0019: dt=110.976000, rms=0.804 (0.305%), neg=0, invalid=762 0020: dt=110.976000, rms=0.801 (0.299%), neg=0, invalid=762 0021: dt=110.976000, rms=0.799 (0.331%), neg=0, invalid=762 0022: dt=110.976000, rms=0.796 (0.350%), neg=0, invalid=762 0023: dt=110.976000, rms=0.793 (0.345%), neg=0, invalid=762 0024: dt=110.976000, rms=0.791 (0.319%), neg=0, invalid=762 0025: dt=110.976000, rms=0.788 (0.294%), neg=0, invalid=762 0026: dt=110.976000, rms=0.786 (0.284%), neg=0, invalid=762 0027: dt=110.976000, rms=0.784 (0.280%), neg=0, invalid=762 0028: dt=110.976000, rms=0.782 (0.261%), neg=0, invalid=762 0029: dt=110.976000, rms=0.780 (0.251%), neg=0, invalid=762 0030: dt=110.976000, rms=0.778 (0.231%), neg=0, invalid=762 0031: dt=110.976000, rms=0.776 (0.214%), neg=0, invalid=762 0032: dt=110.976000, rms=0.775 (0.224%), neg=0, invalid=762 0033: dt=110.976000, rms=0.773 (0.219%), neg=0, invalid=762 0034: dt=110.976000, rms=0.771 (0.199%), neg=0, invalid=762 0035: dt=110.976000, rms=0.770 (0.176%), neg=0, invalid=762 0036: dt=110.976000, rms=0.769 (0.151%), neg=0, invalid=762 0037: dt=110.976000, rms=0.768 (0.139%), neg=0, invalid=762 0038: dt=110.976000, rms=0.767 (0.143%), neg=0, invalid=762 0039: dt=110.976000, rms=0.765 (0.150%), neg=0, invalid=762 0040: dt=110.976000, rms=0.764 (0.146%), neg=0, invalid=762 0041: dt=110.976000, rms=0.763 (0.125%), neg=0, invalid=762 0042: dt=110.976000, rms=0.763 (0.105%), neg=0, invalid=762 0043: dt=110.976000, rms=0.762 (0.091%), neg=0, invalid=762 0044: dt=2071.552000, rms=0.760 (0.211%), neg=0, invalid=762 0045: dt=1.734000, rms=0.760 (-0.003%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.761, neg=0, invalid=762 0046: dt=73.984000, rms=0.760 (0.186%), neg=0, invalid=762 0047: dt=92.480000, rms=0.760 (0.018%), neg=0, invalid=762 0048: dt=92.480000, rms=0.760 (0.029%), neg=0, invalid=762 0049: dt=92.480000, rms=0.759 (0.036%), neg=0, invalid=762 0050: dt=92.480000, rms=0.759 (0.031%), neg=0, invalid=762 0051: dt=92.480000, rms=0.759 (0.038%), neg=0, invalid=762 0052: dt=92.480000, rms=0.759 (0.040%), neg=0, invalid=762 0053: dt=92.480000, rms=0.758 (0.023%), neg=0, invalid=762 setting smoothness coefficient to 0.154 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.766, neg=0, invalid=762 0054: dt=167.436031, rms=0.755 (1.467%), neg=0, invalid=762 0055: dt=199.237251, rms=0.739 (2.179%), neg=0, invalid=762 0056: dt=72.796579, rms=0.730 (1.160%), neg=0, invalid=762 0057: dt=331.776000, rms=0.722 (1.076%), neg=0, invalid=762 0058: dt=70.602105, rms=0.711 (1.483%), neg=0, invalid=762 0059: dt=103.680000, rms=0.709 (0.325%), neg=0, invalid=762 0060: dt=124.416000, rms=0.705 (0.601%), neg=0, invalid=762 0061: dt=36.288000, rms=0.703 (0.245%), neg=0, invalid=762 0062: dt=36.288000, rms=0.702 (0.120%), neg=0, invalid=762 0063: dt=36.288000, rms=0.701 (0.221%), neg=0, invalid=762 0064: dt=36.288000, rms=0.698 (0.349%), neg=0, invalid=762 0065: dt=36.288000, rms=0.695 (0.429%), neg=0, invalid=762 0066: dt=36.288000, rms=0.692 (0.463%), neg=0, invalid=762 0067: dt=36.288000, rms=0.689 (0.478%), neg=0, invalid=762 0068: dt=36.288000, rms=0.686 (0.473%), neg=0, invalid=762 0069: dt=36.288000, rms=0.682 (0.447%), neg=0, invalid=762 0070: dt=36.288000, rms=0.680 (0.408%), neg=0, invalid=762 0071: dt=36.288000, rms=0.677 (0.376%), neg=0, invalid=762 0072: dt=36.288000, rms=0.675 (0.351%), neg=0, invalid=762 0073: dt=36.288000, rms=0.673 (0.298%), neg=0, invalid=762 0074: dt=36.288000, rms=0.671 (0.254%), neg=0, invalid=762 0075: dt=36.288000, rms=0.669 (0.241%), neg=0, invalid=762 0076: dt=36.288000, rms=0.668 (0.205%), neg=0, invalid=762 0077: dt=36.288000, rms=0.667 (0.189%), neg=0, invalid=762 0078: dt=36.288000, rms=0.666 (0.183%), neg=0, invalid=762 0079: dt=36.288000, rms=0.664 (0.174%), neg=0, invalid=762 0080: dt=36.288000, rms=0.663 (0.155%), neg=0, invalid=762 0081: dt=36.288000, rms=0.662 (0.147%), neg=0, invalid=762 0082: dt=36.288000, rms=0.662 (0.124%), neg=0, invalid=762 0083: dt=36.288000, rms=0.661 (0.120%), neg=0, invalid=762 0084: dt=103.680000, rms=0.661 (0.032%), neg=0, invalid=762 0085: dt=51.840000, rms=0.660 (0.051%), neg=0, invalid=762 0086: dt=51.840000, rms=0.660 (0.019%), neg=0, invalid=762 0087: dt=51.840000, rms=0.660 (0.028%), neg=0, invalid=762 0088: dt=51.840000, rms=0.660 (0.040%), neg=0, invalid=762 0089: dt=51.840000, rms=0.660 (0.012%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.662, neg=0, invalid=762 0090: dt=36.288000, rms=0.659 (0.405%), neg=0, invalid=762 0091: dt=36.288000, rms=0.659 (0.027%), neg=0, invalid=762 0092: dt=36.288000, rms=0.659 (0.012%), neg=0, invalid=762 0093: dt=36.288000, rms=0.659 (-0.001%), neg=0, invalid=762 setting smoothness coefficient to 0.588 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.690, neg=0, invalid=762 0094: dt=0.000000, rms=0.688 (0.318%), neg=0, invalid=762 0095: dt=0.000000, rms=0.688 (0.000%), neg=0, invalid=762 0096: dt=0.250000, rms=0.688 (-0.004%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.690, neg=0, invalid=762 0097: dt=0.000000, rms=0.688 (0.318%), neg=0, invalid=762 0098: dt=0.000000, rms=0.688 (0.000%), neg=0, invalid=762 0099: dt=0.250000, rms=0.688 (-0.005%), neg=0, invalid=762 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.778, neg=0, invalid=762 0100: dt=4.548936, rms=0.757 (2.618%), neg=0, invalid=762 0101: dt=1.928571, rms=0.757 (0.085%), neg=0, invalid=762 0102: dt=1.928571, rms=0.757 (-0.065%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.758, neg=0, invalid=762 0103: dt=0.000000, rms=0.757 (0.232%), neg=0, invalid=762 0104: dt=0.000000, rms=0.757 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 5.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.855, neg=0, invalid=762 0105: dt=1.536000, rms=0.847 (0.921%), neg=0, invalid=762 0106: dt=1.792000, rms=0.843 (0.480%), neg=0, invalid=762 0107: dt=0.384000, rms=0.843 (0.025%), neg=0, invalid=762 0108: dt=0.384000, rms=0.842 (0.007%), neg=0, invalid=762 0109: dt=0.384000, rms=0.842 (-0.020%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.844, neg=0, invalid=762 0110: dt=0.768000, rms=0.842 (0.220%), neg=0, invalid=762 0111: dt=0.448000, rms=0.842 (0.011%), neg=0, invalid=762 0112: dt=0.448000, rms=0.842 (0.003%), neg=0, invalid=762 0113: dt=0.448000, rms=0.842 (-0.032%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 10.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.764, neg=0, invalid=762 0114: dt=1.132719, rms=0.731 (4.237%), neg=0, invalid=762 0115: dt=0.112000, rms=0.729 (0.271%), neg=0, invalid=762 0116: dt=0.024000, rms=0.729 (0.007%), neg=0, invalid=762 0117: dt=0.024000, rms=0.729 (-0.007%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.731, neg=0, invalid=762 0118: dt=0.024000, rms=0.729 (0.194%), neg=0, invalid=762 0119: dt=0.000000, rms=0.729 (-0.000%), neg=0, invalid=762 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.10027 (20) mri peak = 0.12756 (15) Left_Lateral_Ventricle (4): linear fit = 0.69 x + 0.0 (2286 voxels, overlap=0.414) Left_Lateral_Ventricle (4): linear fit = 0.69 x + 0.0 (2286 voxels, peak = 14), gca=13.7 gca peak = 0.15565 (16) mri peak = 0.09094 (19) Right_Lateral_Ventricle (43): linear fit = 1.18 x + 0.0 (1726 voxels, overlap=0.820) Right_Lateral_Ventricle (43): linear fit = 1.18 x + 0.0 (1726 voxels, peak = 19), gca=19.0 gca peak = 0.26829 (96) mri peak = 0.07293 (104) Right_Pallidum (52): linear fit = 1.10 x + 0.0 (818 voxels, overlap=0.041) Right_Pallidum (52): linear fit = 1.10 x + 0.0 (818 voxels, peak = 105), gca=105.1 gca peak = 0.20183 (93) mri peak = 0.09451 (99) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (774 voxels, overlap=1.007) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (774 voxels, peak = 97), gca=97.2 gca peak = 0.21683 (55) mri peak = 0.09961 (65) Right_Hippocampus (53): linear fit = 1.15 x + 0.0 (367 voxels, overlap=0.579) Right_Hippocampus (53): linear fit = 1.15 x + 0.0 (367 voxels, peak = 64), gca=63.5 gca peak = 0.30730 (58) mri peak = 0.06215 (62) Left_Hippocampus (17): linear fit = 1.16 x + 0.0 (514 voxels, overlap=0.999) Left_Hippocampus (17): linear fit = 1.16 x + 0.0 (514 voxels, peak = 68), gca=67.6 gca peak = 0.11430 (101) mri peak = 0.08680 (104) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (44369 voxels, overlap=0.687) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (44369 voxels, peak = 107), gca=106.6 gca peak = 0.12076 (102) mri peak = 0.07444 (106) Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (47742 voxels, overlap=0.779) Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (47742 voxels, peak = 106), gca=105.6 gca peak = 0.14995 (59) mri peak = 0.02382 (71) Left_Cerebral_Cortex (3): linear fit = 1.35 x + 0.0 (18569 voxels, overlap=0.000) Left_Cerebral_Cortex (3): linear fit = 1.35 x + 0.0 (18569 voxels, peak = 79), gca=79.4 gca peak = 0.15082 (58) mri peak = 0.02611 (79) Right_Cerebral_Cortex (42): linear fit = 1.35 x + 0.0 (16487 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 1.35 x + 0.0 (16487 voxels, peak = 78), gca=78.0 gca peak = 0.14161 (67) mri peak = 0.04478 (56) Right_Caudate (50): linear fit = 1.05 x + 0.0 (835 voxels, overlap=0.966) Right_Caudate (50): linear fit = 1.05 x + 0.0 (835 voxels, peak = 71), gca=70.7 gca peak = 0.15243 (71) mri peak = 0.10028 (76) Left_Caudate (11): linear fit = 1.09 x + 0.0 (498 voxels, overlap=0.652) Left_Caudate (11): linear fit = 1.09 x + 0.0 (498 voxels, peak = 77), gca=77.0 gca peak = 0.13336 (57) mri peak = 0.04787 (59) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (24562 voxels, overlap=0.745) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (24562 voxels, peak = 64), gca=63.6 gca peak = 0.13252 (56) mri peak = 0.04464 (63) Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (27891 voxels, overlap=0.670) Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (27891 voxels, peak = 62), gca=62.4 gca peak = 0.18181 (84) mri peak = 0.11781 (89) Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (8320 voxels, overlap=0.409) Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (8320 voxels, peak = 90), gca=90.3 gca peak = 0.20573 (83) mri peak = 0.12430 (89) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (6958 voxels, overlap=0.117) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (6958 voxels, peak = 89), gca=89.2 gca peak = 0.21969 (57) mri peak = 0.12652 (67) Left_Amygdala (18): linear fit = 1.16 x + 0.0 (410 voxels, overlap=0.050) Left_Amygdala (18): linear fit = 1.16 x + 0.0 (410 voxels, peak = 66), gca=66.4 gca peak = 0.39313 (56) mri peak = 0.07192 (60) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (408 voxels, overlap=0.591) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (408 voxels, peak = 59), gca=58.5 gca peak = 0.14181 (85) mri peak = 0.06720 (88) Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (4021 voxels, overlap=0.851) Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (4021 voxels, peak = 87), gca=87.1 gca peak = 0.11978 (83) mri peak = 0.07472 (89) Right_Thalamus_Proper (49): linear fit = 1.08 x + 0.0 (2859 voxels, overlap=0.626) Right_Thalamus_Proper (49): linear fit = 1.08 x + 0.0 (2859 voxels, peak = 89), gca=89.2 gca peak = 0.13399 (79) mri peak = 0.10198 (82) Left_Putamen (12): linear fit = 1.03 x + 0.0 (2246 voxels, overlap=0.864) Left_Putamen (12): linear fit = 1.03 x + 0.0 (2246 voxels, peak = 82), gca=81.8 gca peak = 0.14159 (79) mri peak = 0.06268 (90) Right_Putamen (51): linear fit = 1.14 x + 0.0 (2257 voxels, overlap=0.049) Right_Putamen (51): linear fit = 1.14 x + 0.0 (2257 voxels, peak = 90), gca=90.5 gca peak = 0.10025 (80) mri peak = 0.08037 (86) Brain_Stem (16): linear fit = 1.10 x + 0.0 (11242 voxels, overlap=0.402) Brain_Stem (16): linear fit = 1.10 x + 0.0 (11242 voxels, peak = 88), gca=87.6 gca peak = 0.13281 (86) mri peak = 0.13447 (101) Right_VentralDC (60): linear fit = 1.16 x + 0.0 (823 voxels, overlap=0.018) Right_VentralDC (60): linear fit = 1.16 x + 0.0 (823 voxels, peak = 100), gca=100.2 gca peak = 0.12801 (89) mri peak = 0.10571 (100) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (1134 voxels, overlap=0.028) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (1134 voxels, peak = 100), gca=100.1 gca peak = 0.20494 (23) mri peak = 0.22749 (20) Third_Ventricle (14): linear fit = 0.77 x + 0.0 (104 voxels, overlap=0.559) Third_Ventricle (14): linear fit = 0.77 x + 0.0 (104 voxels, peak = 18), gca=17.8 gca peak = 0.15061 (21) mri peak = 0.14227 (21) Fourth_Ventricle (15): linear fit = 0.98 x + 0.0 (416 voxels, overlap=0.681) Fourth_Ventricle (15): linear fit = 0.98 x + 0.0 (416 voxels, peak = 20), gca=20.5 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.18056 (32) gca peak Left_Thalamus = 0.64095 (94) gca peak CSF = 0.20999 (34) gca peak Left_Accumbens_area = 0.39030 (62) gca peak Left_undetermined = 0.95280 (25) gca peak Left_vessel = 0.67734 (53) gca peak Left_choroid_plexus = 0.09433 (44) gca peak Right_Inf_Lat_Vent = 0.23544 (26) gca peak Right_Accumbens_area = 0.30312 (64) gca peak Right_vessel = 0.46315 (51) gca peak Right_choroid_plexus = 0.14086 (44) gca peak Fifth_Ventricle = 0.51669 (36) gca peak WM_hypointensities = 0.09722 (76) gca peak non_WM_hypointensities = 0.11899 (47) gca peak Optic_Chiasm = 0.39033 (72) label assignment complete, 0 changed (0.00%) not using caudate to estimate GM means estimating mean gm scale to be 1.20 x + 0.0 estimating mean wm scale to be 1.04 x + 0.0 estimating mean csf scale to be 0.90 x + 0.0 Right_Pallidum too bright - rescaling by 0.979 (from 1.095) to 102.9 (was 105.1) saving intensity scales to talairach.label_intensities.txt **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.837, neg=0, invalid=762 0120: dt=56.794268, rms=0.827 (1.139%), neg=0, invalid=762 0121: dt=32.368000, rms=0.827 (0.057%), neg=0, invalid=762 0122: dt=18.496000, rms=0.827 (0.015%), neg=0, invalid=762 0123: dt=18.496000, rms=0.826 (0.009%), neg=0, invalid=762 0124: dt=18.496000, rms=0.826 (-0.010%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.828, neg=0, invalid=762 0125: dt=369.920000, rms=0.817 (1.292%), neg=0, invalid=762 0126: dt=129.472000, rms=0.812 (0.616%), neg=0, invalid=762 0127: dt=92.480000, rms=0.812 (0.065%), neg=0, invalid=762 0128: dt=2071.552000, rms=0.796 (1.905%), neg=0, invalid=762 0129: dt=73.984000, rms=0.795 (0.195%), neg=0, invalid=762 0130: dt=73.984000, rms=0.794 (0.030%), neg=0, invalid=762 0131: dt=73.984000, rms=0.794 (0.040%), neg=0, invalid=762 0132: dt=73.984000, rms=0.794 (0.068%), neg=0, invalid=762 0133: dt=73.984000, rms=0.793 (0.093%), neg=0, invalid=762 0134: dt=73.984000, rms=0.792 (0.122%), neg=0, invalid=762 0135: dt=73.984000, rms=0.791 (0.139%), neg=0, invalid=762 0136: dt=73.984000, rms=0.790 (0.152%), neg=0, invalid=762 0137: dt=73.984000, rms=0.788 (0.164%), neg=0, invalid=762 0138: dt=73.984000, rms=0.787 (0.180%), neg=0, invalid=762 0139: dt=73.984000, rms=0.785 (0.197%), neg=0, invalid=762 0140: dt=73.984000, rms=0.784 (0.212%), neg=0, invalid=762 0141: dt=73.984000, rms=0.782 (0.213%), neg=0, invalid=762 0142: dt=73.984000, rms=0.780 (0.202%), neg=0, invalid=762 0143: dt=73.984000, rms=0.779 (0.182%), neg=0, invalid=762 0144: dt=73.984000, rms=0.778 (0.168%), neg=0, invalid=762 0145: dt=73.984000, rms=0.776 (0.165%), neg=0, invalid=762 0146: dt=73.984000, rms=0.775 (0.172%), neg=0, invalid=762 0147: dt=73.984000, rms=0.774 (0.177%), neg=0, invalid=762 0148: dt=73.984000, rms=0.772 (0.172%), neg=0, invalid=762 0149: dt=73.984000, rms=0.771 (0.157%), neg=0, invalid=762 0150: dt=73.984000, rms=0.770 (0.137%), neg=0, invalid=762 0151: dt=73.984000, rms=0.770 (0.006%), neg=0, invalid=762 0152: dt=73.984000, rms=0.770 (0.014%), neg=0, invalid=762 0153: dt=73.984000, rms=0.770 (0.025%), neg=0, invalid=762 0154: dt=73.984000, rms=0.769 (0.037%), neg=0, invalid=762 0155: dt=73.984000, rms=0.769 (0.050%), neg=0, invalid=762 0156: dt=73.984000, rms=0.769 (0.059%), neg=0, invalid=762 0157: dt=73.984000, rms=0.768 (0.065%), neg=0, invalid=762 0158: dt=73.984000, rms=0.768 (0.067%), neg=0, invalid=762 0159: dt=73.984000, rms=0.767 (0.070%), neg=0, invalid=762 0160: dt=73.984000, rms=0.766 (0.072%), neg=0, invalid=762 0161: dt=73.984000, rms=0.766 (0.073%), neg=0, invalid=762 0162: dt=73.984000, rms=0.765 (0.072%), neg=0, invalid=762 0163: dt=73.984000, rms=0.765 (0.069%), neg=0, invalid=762 0164: dt=73.984000, rms=0.765 (0.009%), neg=0, invalid=762 0165: dt=36.992000, rms=0.765 (0.005%), neg=0, invalid=762 0166: dt=32.368000, rms=0.765 (0.004%), neg=0, invalid=762 0167: dt=2.023000, rms=0.765 (0.000%), neg=0, invalid=762 0168: dt=1.011500, rms=0.765 (0.000%), neg=0, invalid=762 0169: dt=0.252875, rms=0.765 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.767, neg=0, invalid=762 0170: dt=0.000000, rms=0.765 (0.253%), neg=0, invalid=762 0171: dt=0.000000, rms=0.765 (0.000%), neg=0, invalid=762 0172: dt=0.000879, rms=0.765 (0.000%), neg=0, invalid=762 0173: dt=0.000439, rms=0.765 (0.000%), neg=0, invalid=762 0174: dt=0.000220, rms=0.765 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.767, neg=0, invalid=762 0175: dt=0.000000, rms=0.765 (0.253%), neg=0, invalid=762 0176: dt=0.000000, rms=0.765 (0.000%), neg=0, invalid=762 0177: dt=0.000014, rms=0.765 (0.000%), neg=0, invalid=762 0178: dt=0.000007, rms=0.765 (0.000%), neg=0, invalid=762 0179: dt=0.000002, rms=0.765 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.769, neg=0, invalid=762 0180: dt=0.000000, rms=0.767 (0.252%), neg=0, invalid=762 0181: dt=0.000000, rms=0.767 (0.000%), neg=0, invalid=762 0182: dt=0.000000, rms=0.767 (0.000%), neg=0, invalid=762 0183: dt=0.000000, rms=0.767 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.769, neg=0, invalid=762 0184: dt=0.000000, rms=0.767 (0.252%), neg=0, invalid=762 0185: dt=0.000000, rms=0.767 (0.000%), neg=0, invalid=762 0186: dt=0.000000, rms=0.767 (-0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.774, neg=0, invalid=762 0187: dt=1.008000, rms=0.760 (1.765%), neg=0, invalid=762 0188: dt=1.008000, rms=0.749 (1.441%), neg=0, invalid=762 0189: dt=0.216000, rms=0.747 (0.294%), neg=0, invalid=762 0190: dt=0.015750, rms=0.747 (0.022%), neg=0, invalid=762 0191: dt=0.003938, rms=0.747 (0.005%), neg=0, invalid=762 0192: dt=0.001969, rms=0.747 (0.003%), neg=0, invalid=762 0193: dt=0.000492, rms=0.747 (0.001%), neg=0, invalid=762 0194: dt=0.000246, rms=0.747 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.749, neg=0, invalid=762 0195: dt=0.000000, rms=0.747 (0.247%), neg=0, invalid=762 0196: dt=0.000000, rms=0.747 (0.000%), neg=0, invalid=762 0197: dt=0.000146, rms=0.747 (0.000%), neg=0, invalid=762 0198: dt=0.000018, rms=0.747 (0.000%), neg=0, invalid=762 0199: dt=0.000005, rms=0.747 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.761, neg=0, invalid=762 0200: dt=1.792000, rms=0.726 (4.630%), neg=0, invalid=762 0201: dt=1.792000, rms=0.707 (2.643%), neg=0, invalid=762 0202: dt=1.792000, rms=0.695 (1.565%), neg=0, invalid=762 0203: dt=1.792000, rms=0.689 (0.962%), neg=0, invalid=762 0204: dt=1.280000, rms=0.686 (0.467%), neg=0, invalid=762 0205: dt=1.792000, rms=0.682 (0.519%), neg=0, invalid=762 0206: dt=1.536000, rms=0.680 (0.326%), neg=0, invalid=762 0207: dt=1.280000, rms=0.678 (0.216%), neg=0, invalid=762 0208: dt=1.280000, rms=0.677 (0.190%), neg=0, invalid=762 0209: dt=1.536000, rms=0.676 (0.190%), neg=0, invalid=762 0210: dt=1.280000, rms=0.675 (0.136%), neg=0, invalid=762 0211: dt=1.536000, rms=0.674 (0.141%), neg=0, invalid=762 0212: dt=1.536000, rms=0.673 (0.122%), neg=0, invalid=762 0213: dt=1.536000, rms=0.672 (0.106%), neg=0, invalid=762 0214: dt=1.280000, rms=0.672 (0.079%), neg=0, invalid=762 0215: dt=1.792000, rms=0.671 (0.100%), neg=0, invalid=762 0216: dt=1.280000, rms=0.671 (0.060%), neg=0, invalid=762 0217: dt=1.536000, rms=0.670 (0.068%), neg=0, invalid=762 0218: dt=1.280000, rms=0.670 (0.052%), neg=0, invalid=762 0219: dt=1.280000, rms=0.670 (0.046%), neg=0, invalid=762 0220: dt=1.280000, rms=0.669 (0.043%), neg=0, invalid=762 0221: dt=1.280000, rms=0.669 (0.037%), neg=0, invalid=762 0222: dt=1.280000, rms=0.669 (0.070%), neg=0, invalid=762 0223: dt=1.280000, rms=0.668 (0.093%), neg=0, invalid=762 0224: dt=1.280000, rms=0.667 (0.104%), neg=0, invalid=762 0225: dt=1.280000, rms=0.667 (0.019%), neg=0, invalid=762 0226: dt=1.280000, rms=0.667 (0.025%), neg=0, invalid=762 0227: dt=1.280000, rms=0.667 (0.036%), neg=0, invalid=762 0228: dt=1.280000, rms=0.666 (0.045%), neg=0, invalid=762 0229: dt=1.280000, rms=0.666 (0.048%), neg=0, invalid=762 0230: dt=1.280000, rms=0.666 (0.050%), neg=0, invalid=762 0231: dt=1.280000, rms=0.666 (0.003%), neg=0, invalid=762 0232: dt=1.280000, rms=0.666 (0.006%), neg=0, invalid=762 0233: dt=1.280000, rms=0.666 (0.008%), neg=0, invalid=762 0234: dt=1.280000, rms=0.666 (0.008%), neg=0, invalid=762 0235: dt=1.536000, rms=0.666 (0.005%), neg=0, invalid=762 0236: dt=1.536000, rms=0.666 (0.005%), neg=0, invalid=762 0237: dt=1.536000, rms=0.666 (0.004%), neg=0, invalid=762 0238: dt=1.536000, rms=0.665 (0.009%), neg=0, invalid=762 0239: dt=1.536000, rms=0.665 (0.014%), neg=0, invalid=762 0240: dt=1.536000, rms=0.665 (0.012%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.666, neg=0, invalid=762 0241: dt=1.792000, rms=0.664 (0.390%), neg=0, invalid=762 0242: dt=1.536000, rms=0.664 (0.039%), neg=0, invalid=762 0243: dt=0.768000, rms=0.664 (-0.001%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.646, neg=0, invalid=762 0244: dt=0.320000, rms=0.628 (2.756%), neg=0, invalid=762 0245: dt=0.112000, rms=0.624 (0.578%), neg=0, invalid=762 0246: dt=0.112000, rms=0.621 (0.514%), neg=0, invalid=762 0247: dt=0.112000, rms=0.618 (0.453%), neg=0, invalid=762 0248: dt=0.112000, rms=0.616 (0.401%), neg=0, invalid=762 0249: dt=0.112000, rms=0.613 (0.356%), neg=0, invalid=762 0250: dt=0.112000, rms=0.611 (0.318%), neg=0, invalid=762 0251: dt=0.112000, rms=0.610 (0.283%), neg=0, invalid=762 0252: dt=0.112000, rms=0.608 (0.255%), neg=0, invalid=762 0253: dt=0.112000, rms=0.607 (0.233%), neg=0, invalid=762 0254: dt=0.112000, rms=0.605 (0.207%), neg=0, invalid=762 0255: dt=0.173611, rms=0.604 (0.296%), neg=0, invalid=762 0256: dt=0.169643, rms=0.602 (0.249%), neg=0, invalid=762 0257: dt=0.112000, rms=0.601 (0.147%), neg=0, invalid=762 0258: dt=0.112000, rms=0.601 (0.134%), neg=0, invalid=762 0259: dt=0.112000, rms=0.600 (0.128%), neg=0, invalid=762 0260: dt=0.112000, rms=0.599 (0.116%), neg=0, invalid=762 0261: dt=0.112000, rms=0.598 (0.111%), neg=0, invalid=762 0262: dt=0.112000, rms=0.598 (0.101%), neg=0, invalid=762 0263: dt=0.112000, rms=0.597 (0.097%), neg=0, invalid=762 0264: dt=0.112000, rms=0.597 (0.089%), neg=0, invalid=762 0265: dt=0.112000, rms=0.596 (0.088%), neg=0, invalid=762 0266: dt=0.112000, rms=0.596 (0.079%), neg=0, invalid=762 0267: dt=0.112000, rms=0.595 (0.078%), neg=0, invalid=762 0268: dt=0.112000, rms=0.595 (0.072%), neg=0, invalid=762 0269: dt=0.112000, rms=0.594 (0.070%), neg=0, invalid=762 0270: dt=0.112000, rms=0.594 (0.065%), neg=0, invalid=762 0271: dt=0.112000, rms=0.594 (0.061%), neg=0, invalid=762 0272: dt=0.112000, rms=0.593 (0.059%), neg=0, invalid=762 0273: dt=0.112000, rms=0.593 (0.055%), neg=0, invalid=762 0274: dt=0.112000, rms=0.593 (0.056%), neg=0, invalid=762 0275: dt=0.112000, rms=0.592 (0.049%), neg=0, invalid=762 0276: dt=0.112000, rms=0.592 (0.051%), neg=0, invalid=762 0277: dt=0.112000, rms=0.591 (0.094%), neg=0, invalid=762 0278: dt=0.112000, rms=0.591 (0.121%), neg=0, invalid=762 0279: dt=0.112000, rms=0.590 (0.150%), neg=0, invalid=762 0280: dt=0.112000, rms=0.589 (0.165%), neg=0, invalid=762 0281: dt=0.112000, rms=0.588 (0.172%), neg=0, invalid=762 0282: dt=0.112000, rms=0.587 (0.175%), neg=0, invalid=762 0283: dt=0.112000, rms=0.586 (0.165%), neg=0, invalid=762 0284: dt=0.112000, rms=0.585 (0.151%), neg=0, invalid=762 0285: dt=0.112000, rms=0.584 (0.141%), neg=0, invalid=762 0286: dt=0.112000, rms=0.583 (0.123%), neg=0, invalid=762 0287: dt=0.112000, rms=0.583 (0.101%), neg=0, invalid=762 0288: dt=0.112000, rms=0.582 (0.092%), neg=0, invalid=762 0289: dt=0.112000, rms=0.582 (0.070%), neg=0, invalid=762 0290: dt=0.112000, rms=0.582 (0.049%), neg=0, invalid=762 0291: dt=0.112000, rms=0.581 (0.043%), neg=0, invalid=762 0292: dt=0.112000, rms=0.581 (0.029%), neg=0, invalid=762 0293: dt=0.112000, rms=0.581 (0.023%), neg=0, invalid=762 0294: dt=0.112000, rms=0.581 (0.013%), neg=0, invalid=762 0295: dt=0.000000, rms=0.581 (-0.002%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.582, neg=0, invalid=762 0296: dt=0.112000, rms=0.580 (0.391%), neg=0, invalid=762 0297: dt=0.118056, rms=0.579 (0.158%), neg=0, invalid=762 0298: dt=0.112000, rms=0.578 (0.112%), neg=0, invalid=762 0299: dt=0.112000, rms=0.578 (0.080%), neg=0, invalid=762 0300: dt=0.112000, rms=0.577 (0.060%), neg=0, invalid=762 0301: dt=0.112000, rms=0.577 (0.041%), neg=0, invalid=762 0302: dt=0.112000, rms=0.577 (0.028%), neg=0, invalid=762 0303: dt=0.112000, rms=0.577 (0.045%), neg=0, invalid=762 0304: dt=0.112000, rms=0.577 (0.039%), neg=0, invalid=762 0305: dt=0.112000, rms=0.576 (0.014%), neg=0, invalid=762 0306: dt=0.112000, rms=0.577 (-0.024%), neg=0, invalid=762 0307: dt=0.000000, rms=0.577 (0.000%), neg=0, invalid=762 label assignment complete, 0 changed (0.00%) ********************* ALLOWING NEGATIVE NODES IN DEFORMATION******************************** **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.573, neg=0, invalid=762 0308: dt=1.156000, rms=0.572 (0.196%), neg=0, invalid=762 0309: dt=0.072250, rms=0.572 (0.001%), neg=0, invalid=762 0310: dt=0.072250, rms=0.572 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.573, neg=0, invalid=762 0311: dt=73.984000, rms=0.572 (0.220%), neg=0, invalid=762 0312: dt=295.936000, rms=0.571 (0.064%), neg=0, invalid=762 0313: dt=295.936000, rms=0.571 (-0.223%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.573, neg=0, invalid=762 0314: dt=63.294766, rms=0.568 (0.773%), neg=0, invalid=762 0315: dt=98.506912, rms=0.566 (0.380%), neg=0, invalid=762 0316: dt=36.288000, rms=0.565 (0.249%), neg=0, invalid=762 0317: dt=36.288000, rms=0.564 (0.098%), neg=0, invalid=762 0318: dt=36.288000, rms=0.563 (0.160%), neg=0, invalid=762 0319: dt=36.288000, rms=0.562 (0.261%), neg=0, invalid=762 0320: dt=36.288000, rms=0.561 (0.194%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 8 iterations, nbhd size=1, neg = 0 0321: dt=36.288000, rms=0.560 (0.157%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 4 iterations, nbhd size=0, neg = 0 0322: dt=36.288000, rms=0.559 (0.103%), neg=0, invalid=762 iter 0, gcam->neg = 6 after 7 iterations, nbhd size=0, neg = 0 0323: dt=36.288000, rms=0.559 (0.097%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 5 iterations, nbhd size=0, neg = 0 0324: dt=103.680000, rms=0.558 (0.121%), neg=0, invalid=762 0325: dt=25.920000, rms=0.558 (0.061%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 0326: dt=25.920000, rms=0.557 (0.030%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 3 iterations, nbhd size=0, neg = 0 0327: dt=25.920000, rms=0.557 (0.048%), neg=0, invalid=762 0328: dt=25.920000, rms=0.557 (0.070%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 4 iterations, nbhd size=0, neg = 0 0329: dt=25.920000, rms=0.556 (0.086%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 8 iterations, nbhd size=1, neg = 0 0330: dt=25.920000, rms=0.556 (0.058%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 3 iterations, nbhd size=0, neg = 0 0331: dt=25.920000, rms=0.556 (0.084%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0332: dt=25.920000, rms=0.555 (0.074%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.557, neg=0, invalid=762 0333: dt=65.220708, rms=0.554 (0.540%), neg=0, invalid=762 0334: dt=85.561497, rms=0.552 (0.267%), neg=0, invalid=762 0335: dt=22.857143, rms=0.552 (0.062%), neg=0, invalid=762 0336: dt=22.857143, rms=0.552 (0.032%), neg=0, invalid=762 0337: dt=22.857143, rms=0.551 (0.051%), neg=0, invalid=762 0338: dt=22.857143, rms=0.551 (0.073%), neg=0, invalid=762 0339: dt=22.857143, rms=0.550 (0.092%), neg=0, invalid=762 0340: dt=22.857143, rms=0.550 (0.093%), neg=0, invalid=762 0341: dt=22.857143, rms=0.550 (0.074%), neg=0, invalid=762 0342: dt=22.857143, rms=0.549 (0.064%), neg=0, invalid=762 0343: dt=497.664000, rms=0.548 (0.161%), neg=0, invalid=762 0344: dt=64.481203, rms=0.548 (0.114%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.550, neg=0, invalid=762 iter 0, gcam->neg = 114 after 17 iterations, nbhd size=1, neg = 0 0345: dt=68.907348, rms=0.539 (2.137%), neg=0, invalid=762 iter 0, gcam->neg = 8 after 1 iterations, nbhd size=0, neg = 0 0346: dt=25.600000, rms=0.535 (0.742%), neg=0, invalid=762 iter 0, gcam->neg = 179 after 20 iterations, nbhd size=1, neg = 0 0347: dt=62.157068, rms=0.530 (0.911%), neg=0, invalid=762 iter 0, gcam->neg = 4 after 9 iterations, nbhd size=1, neg = 0 0348: dt=11.200000, rms=0.528 (0.293%), neg=0, invalid=762 iter 0, gcam->neg = 8 after 10 iterations, nbhd size=1, neg = 0 0349: dt=25.600000, rms=0.527 (0.240%), neg=0, invalid=762 iter 0, gcam->neg = 17 after 10 iterations, nbhd size=1, neg = 0 0350: dt=25.600000, rms=0.525 (0.386%), neg=0, invalid=762 iter 0, gcam->neg = 41 after 18 iterations, nbhd size=1, neg = 0 0351: dt=25.600000, rms=0.523 (0.359%), neg=0, invalid=762 iter 0, gcam->neg = 45 after 17 iterations, nbhd size=1, neg = 0 0352: dt=25.600000, rms=0.521 (0.309%), neg=0, invalid=762 iter 0, gcam->neg = 92 after 19 iterations, nbhd size=1, neg = 0 0353: dt=25.600000, rms=0.519 (0.424%), neg=0, invalid=762 iter 0, gcam->neg = 149 after 24 iterations, nbhd size=1, neg = 0 0354: dt=25.600000, rms=0.516 (0.521%), neg=0, invalid=762 iter 0, gcam->neg = 235 after 41 iterations, nbhd size=3, neg = 0 0355: dt=25.600000, rms=0.516 (-0.272%), neg=0, invalid=762 iter 0, gcam->neg = 10 after 9 iterations, nbhd size=0, neg = 0 0356: dt=4.800000, rms=0.516 (0.005%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 2 iterations, nbhd size=0, neg = 0 0357: dt=2.000000, rms=0.516 (0.003%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.518, neg=0, invalid=762 iter 0, gcam->neg = 10 after 9 iterations, nbhd size=0, neg = 0 0358: dt=11.200000, rms=0.516 (0.443%), neg=0, invalid=762 iter 0, gcam->neg = 25 after 12 iterations, nbhd size=1, neg = 0 0359: dt=32.000000, rms=0.515 (0.187%), neg=0, invalid=762 iter 0, gcam->neg = 6 after 2 iterations, nbhd size=0, neg = 0 0360: dt=32.000000, rms=0.513 (0.312%), neg=0, invalid=762 iter 0, gcam->neg = 22 after 15 iterations, nbhd size=1, neg = 0 0361: dt=32.000000, rms=0.512 (0.313%), neg=0, invalid=762 iter 0, gcam->neg = 29 after 13 iterations, nbhd size=1, neg = 0 0362: dt=32.000000, rms=0.511 (0.051%), neg=0, invalid=762 iter 0, gcam->neg = 59 after 18 iterations, nbhd size=1, neg = 0 0363: dt=32.000000, rms=0.511 (0.119%), neg=0, invalid=762 iter 0, gcam->neg = 67 after 18 iterations, nbhd size=1, neg = 0 0364: dt=32.000000, rms=0.510 (0.076%), neg=0, invalid=762 iter 0, gcam->neg = 13 after 6 iterations, nbhd size=0, neg = 0 0365: dt=38.400000, rms=0.510 (0.152%), neg=0, invalid=762 iter 0, gcam->neg = 8 after 12 iterations, nbhd size=1, neg = 0 0366: dt=32.000000, rms=0.509 (0.167%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 5 iterations, nbhd size=0, neg = 0 0367: dt=11.200000, rms=0.508 (0.107%), neg=0, invalid=762 0368: dt=11.200000, rms=0.508 (0.028%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0369: dt=11.200000, rms=0.508 (0.028%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 1 iterations, nbhd size=0, neg = 0 0370: dt=11.200000, rms=0.508 (0.066%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 9 iterations, nbhd size=1, neg = 0 0371: dt=11.200000, rms=0.507 (0.080%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 11 iterations, nbhd size=1, neg = 0 0372: dt=11.200000, rms=0.507 (0.089%), neg=0, invalid=762 iter 0, gcam->neg = 7 after 11 iterations, nbhd size=1, neg = 0 0373: dt=11.200000, rms=0.506 (0.082%), neg=0, invalid=762 iter 0, gcam->neg = 14 after 13 iterations, nbhd size=1, neg = 0 0374: dt=11.200000, rms=0.506 (0.093%), neg=0, invalid=762 iter 0, gcam->neg = 11 after 12 iterations, nbhd size=1, neg = 0 0375: dt=11.200000, rms=0.505 (0.093%), neg=0, invalid=762 iter 0, gcam->neg = 12 after 10 iterations, nbhd size=1, neg = 0 0376: dt=11.200000, rms=0.505 (0.095%), neg=0, invalid=762 iter 0, gcam->neg = 16 after 17 iterations, nbhd size=2, neg = 0 0377: dt=11.200000, rms=0.505 (0.004%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.516, neg=0, invalid=762 0378: dt=0.000211, rms=0.514 (0.363%), neg=0, invalid=762 0379: dt=0.000000, rms=0.514 (0.000%), neg=0, invalid=762 0380: dt=0.150000, rms=0.514 (-0.001%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.516, neg=0, invalid=762 0381: dt=0.000000, rms=0.514 (0.363%), neg=0, invalid=762 0382: dt=0.000000, rms=0.514 (0.000%), neg=0, invalid=762 0383: dt=0.150000, rms=0.514 (-0.007%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.533, neg=0, invalid=762 0384: dt=0.384000, rms=0.531 (0.372%), neg=0, invalid=762 0385: dt=0.112000, rms=0.531 (0.008%), neg=0, invalid=762 0386: dt=0.112000, rms=0.531 (0.001%), neg=0, invalid=762 0387: dt=0.112000, rms=0.531 (-0.008%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.533, neg=0, invalid=762 0388: dt=0.448000, rms=0.531 (0.369%), neg=0, invalid=762 0389: dt=0.192000, rms=0.531 (0.011%), neg=0, invalid=762 0390: dt=0.192000, rms=0.531 (-0.002%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.509, neg=0, invalid=762 iter 0, gcam->neg = 3006 after 20 iterations, nbhd size=1, neg = 0 0391: dt=1.808034, rms=0.473 (7.012%), neg=0, invalid=762 0392: dt=0.000013, rms=0.473 (-0.010%), neg=0, invalid=762 0393: dt=0.000013, rms=0.473 (0.000%), neg=0, invalid=762 0394: dt=0.000013, rms=0.473 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.475, neg=0, invalid=762 0395: dt=0.007000, rms=0.473 (0.440%), neg=0, invalid=762 0396: dt=0.005000, rms=0.473 (0.000%), neg=0, invalid=762 0397: dt=0.005000, rms=0.473 (0.000%), neg=0, invalid=762 0398: dt=0.005000, rms=0.473 (-0.002%), neg=0, invalid=762 label assignment complete, 0 changed (0.00%) label assignment complete, 0 changed (0.00%) ***************** morphing with label term set to 0 ******************************* **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.460, neg=0, invalid=762 0399: dt=23.120000, rms=0.460 (0.011%), neg=0, invalid=762 0400: dt=2.023000, rms=0.460 (0.000%), neg=0, invalid=762 0401: dt=2.023000, rms=0.460 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.460, neg=0, invalid=762 0402: dt=32.368000, rms=0.460 (0.002%), neg=0, invalid=762 0403: dt=23.120000, rms=0.460 (0.000%), neg=0, invalid=762 0404: dt=23.120000, rms=0.460 (0.000%), neg=0, invalid=762 0405: dt=23.120000, rms=0.460 (-0.001%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.461, neg=0, invalid=762 iter 0, gcam->neg = 4 after 1 iterations, nbhd size=0, neg = 0 0406: dt=36.288000, rms=0.460 (0.102%), neg=0, invalid=762 iter 0, gcam->neg = 18 after 12 iterations, nbhd size=1, neg = 0 0407: dt=25.920000, rms=0.460 (-0.022%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.460, neg=0, invalid=762 iter 0, gcam->neg = 5 after 9 iterations, nbhd size=1, neg = 0 0408: dt=36.288000, rms=0.460 (0.032%), neg=0, invalid=762 iter 0, gcam->neg = 7 after 1 iterations, nbhd size=0, neg = 0 0409: dt=103.680000, rms=0.460 (0.053%), neg=0, invalid=762 iter 0, gcam->neg = 16 after 10 iterations, nbhd size=1, neg = 0 0410: dt=145.152000, rms=0.459 (0.095%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 7 iterations, nbhd size=1, neg = 0 0411: dt=36.288000, rms=0.459 (0.013%), neg=0, invalid=762 iter 0, gcam->neg = 4 after 8 iterations, nbhd size=1, neg = 0 0412: dt=36.288000, rms=0.459 (0.003%), neg=0, invalid=762 iter 0, gcam->neg = 6 after 2 iterations, nbhd size=0, neg = 0 0413: dt=36.288000, rms=0.459 (0.020%), neg=0, invalid=762 iter 0, gcam->neg = 8 after 3 iterations, nbhd size=0, neg = 0 0414: dt=36.288000, rms=0.459 (0.027%), neg=0, invalid=762 iter 0, gcam->neg = 7 after 9 iterations, nbhd size=1, neg = 0 0415: dt=36.288000, rms=0.459 (0.033%), neg=0, invalid=762 iter 0, gcam->neg = 10 after 12 iterations, nbhd size=1, neg = 0 0416: dt=36.288000, rms=0.459 (0.035%), neg=0, invalid=762 iter 0, gcam->neg = 10 after 3 iterations, nbhd size=0, neg = 0 0417: dt=36.288000, rms=0.459 (0.040%), neg=0, invalid=762 iter 0, gcam->neg = 16 after 8 iterations, nbhd size=1, neg = 0 0418: dt=36.288000, rms=0.458 (0.027%), neg=0, invalid=762 iter 0, gcam->neg = 9 after 11 iterations, nbhd size=1, neg = 0 0419: dt=36.288000, rms=0.458 (0.027%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.459, neg=0, invalid=762 iter 0, gcam->neg = 216 after 25 iterations, nbhd size=1, neg = 0 0420: dt=38.400000, rms=0.458 (0.244%), neg=0, invalid=762 iter 0, gcam->neg = 214 after 27 iterations, nbhd size=1, neg = 0 0421: dt=44.800000, rms=0.458 (0.055%), neg=0, invalid=762 iter 0, gcam->neg = 206 after 28 iterations, nbhd size=1, neg = 0 0422: dt=44.800000, rms=0.458 (-0.206%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.458, neg=0, invalid=762 iter 0, gcam->neg = 67 after 27 iterations, nbhd size=2, neg = 0 0423: dt=38.400000, rms=0.457 (0.105%), neg=0, invalid=762 iter 0, gcam->neg = 288 after 23 iterations, nbhd size=1, neg = 0 0424: dt=61.677419, rms=0.454 (0.589%), neg=0, invalid=762 iter 0, gcam->neg = 10 after 9 iterations, nbhd size=1, neg = 0 0425: dt=11.200000, rms=0.454 (0.092%), neg=0, invalid=762 iter 0, gcam->neg = 12 after 13 iterations, nbhd size=1, neg = 0 0426: dt=11.200000, rms=0.454 (0.022%), neg=0, invalid=762 iter 0, gcam->neg = 22 after 12 iterations, nbhd size=1, neg = 0 0427: dt=11.200000, rms=0.454 (0.047%), neg=0, invalid=762 iter 0, gcam->neg = 34 after 15 iterations, nbhd size=1, neg = 0 0428: dt=11.200000, rms=0.454 (-0.036%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.457, neg=0, invalid=762 iter 0, gcam->neg = 559 after 23 iterations, nbhd size=1, neg = 0 0429: dt=18.351254, rms=0.454 (0.663%), neg=0, invalid=762 iter 0, gcam->neg = 357 after 29 iterations, nbhd size=1, neg = 0 0430: dt=10.837333, rms=0.454 (0.045%), neg=0, invalid=762 iter 0, gcam->neg = 331 after 43 iterations, nbhd size=2, neg = 0 0431: dt=10.837333, rms=0.453 (0.127%), neg=0, invalid=762 iter 0, gcam->neg = 561 after 32 iterations, nbhd size=1, neg = 0 0432: dt=10.837333, rms=0.453 (-0.014%), neg=0, invalid=762 iter 0, gcam->neg = 266 after 24 iterations, nbhd size=1, neg = 0 0433: dt=10.612658, rms=0.453 (0.008%), neg=0, invalid=762 iter 0, gcam->neg = 183 after 20 iterations, nbhd size=1, neg = 0 0434: dt=9.696970, rms=0.452 (0.185%), neg=0, invalid=762 iter 0, gcam->neg = 241 after 23 iterations, nbhd size=1, neg = 0 0435: dt=10.434783, rms=0.452 (-0.161%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.452, neg=0, invalid=762 iter 0, gcam->neg = 183 after 20 iterations, nbhd size=1, neg = 0 0436: dt=10.261603, rms=0.452 (0.071%), neg=0, invalid=762 iter 0, gcam->neg = 149 after 27 iterations, nbhd size=1, neg = 0 0437: dt=10.758621, rms=0.451 (0.191%), neg=0, invalid=762 iter 0, gcam->neg = 156 after 22 iterations, nbhd size=1, neg = 0 0438: dt=9.377644, rms=0.451 (-0.072%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.459, neg=0, invalid=762 0439: dt=0.000050, rms=0.459 (0.000%), neg=0, invalid=762 0440: dt=0.000000, rms=0.459 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.459, neg=0, invalid=762 0441: dt=0.000000, rms=0.459 (0.000%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.446, neg=0, invalid=762 iter 0, gcam->neg = 2120 after 28 iterations, nbhd size=1, neg = 0 0442: dt=0.856828, rms=0.440 (1.338%), neg=0, invalid=762 0443: dt=0.112000, rms=0.440 (0.075%), neg=0, invalid=762 0444: dt=0.112000, rms=0.439 (0.048%), neg=0, invalid=762 0445: dt=0.112000, rms=0.439 (0.014%), neg=0, invalid=762 0446: dt=0.112000, rms=0.439 (-0.037%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.439, neg=0, invalid=762 iter 0, gcam->neg = 679 after 19 iterations, nbhd size=1, neg = 0 0447: dt=0.657534, rms=0.438 (0.383%), neg=0, invalid=762 iter 0, gcam->neg = 17 after 1 iterations, nbhd size=0, neg = 0 0448: dt=0.320000, rms=0.436 (0.273%), neg=0, invalid=762 iter 0, gcam->neg = 56 after 1 iterations, nbhd size=0, neg = 0 0449: dt=0.384000, rms=0.435 (0.304%), neg=0, invalid=762 iter 0, gcam->neg = 13 after 7 iterations, nbhd size=1, neg = 0 0450: dt=0.320000, rms=0.434 (0.206%), neg=0, invalid=762 iter 0, gcam->neg = 5 after 0 iterations, nbhd size=0, neg = 0 0451: dt=0.320000, rms=0.433 (0.203%), neg=0, invalid=762 iter 0, gcam->neg = 29 after 2 iterations, nbhd size=0, neg = 0 0452: dt=0.320000, rms=0.432 (0.310%), neg=0, invalid=762 iter 0, gcam->neg = 94 after 10 iterations, nbhd size=1, neg = 0 0453: dt=0.320000, rms=0.431 (0.188%), neg=0, invalid=762 iter 0, gcam->neg = 133 after 15 iterations, nbhd size=1, neg = 0 0454: dt=0.320000, rms=0.431 (0.086%), neg=0, invalid=762 iter 0, gcam->neg = 155 after 20 iterations, nbhd size=1, neg = 0 0455: dt=0.320000, rms=0.431 (-0.149%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0456: dt=0.192000, rms=0.430 (0.096%), neg=0, invalid=762 0457: dt=0.256000, rms=0.430 (0.069%), neg=0, invalid=762 writing output transformation to transforms/talairach.m3z... GCAMwrite mri_ca_register took 2 hours, 6 minutes and 8 seconds. mri_ca_register utimesec 7555.088243 mri_ca_register stimesec 9.639131 mri_ca_register ru_maxrss 1339180 mri_ca_register ru_ixrss 0 mri_ca_register ru_idrss 0 mri_ca_register ru_isrss 0 mri_ca_register ru_minflt 6459619 mri_ca_register ru_majflt 0 mri_ca_register ru_nswap 0 mri_ca_register ru_inblock 0 mri_ca_register ru_oublock 64536 mri_ca_register ru_msgsnd 0 mri_ca_register ru_msgrcv 0 mri_ca_register ru_nsignals 0 mri_ca_register ru_nvcsw 3116 mri_ca_register ru_nivcsw 59970 FSRUNTIME@ mri_ca_register 2.1021 hours 1 threads Started at Fri Jul 27 11:48:12 CDT 2018 Ended at Fri Jul 27 13:54:20 CDT 2018 #@#%# recon-all-run-time-hours 2.102 recon-all -s pp_assurgent finished without error at Fri Jul 27 13:54:20 CDT 2018 Fri Jul 27 13:54:20 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -calabel #-------------------------------------- #@# SubCort Seg Fri Jul 27 13:54:20 CDT 2018 mri_seg_diff --seg1 aseg.auto.mgz --seg2 aseg.presurf.mgz --diff aseg.manedit.mgz $Id: mri_seg_diff.c,v 1.5 2011/03/02 00:04:24 nicks Exp $ cwd /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri cmdline mri_seg_diff --seg1 aseg.auto.mgz --seg2 aseg.presurf.mgz --diff aseg.manedit.mgz sysname Linux hostname picasso machine x86_64 user tmhedr3 Seg1 aseg.auto.mgz Seg2 aseg.presurf.mgz Diff aseg.manedit.mgz InDiff (null) Merged (null) ForceDiff 0 Computing difference between segmentations No difference found. mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /space/nnac/alzheimer_center/pubsw/freesurfer/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz sysname Linux hostname picasso machine x86_64 setenv SUBJECTS_DIR /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS cd /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /space/nnac/alzheimer_center/pubsw/freesurfer/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz == Number of threads available to mri_ca_label for OpenMP = 1 == relabeling unlikely voxels with window_size = 9 and prior threshold 0.30 using Gibbs prior factor = 0.500 renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 reading 1 input volumes reading classifier array from /space/nnac/alzheimer_center/pubsw/freesurfer/average/RB_all_2016-05-10.vc700.gca reading input volume from norm.mgz average std[0] = 7.3 reading transform from transforms/talairach.m3z setting orig areas to linear transform determinant scaled 6.17 Atlas used for the 3D morph was /space/nnac/alzheimer_center/pubsw/freesurfer/average/RB_all_2016-05-10.vc700.gca average std = 7.3 using min determinant for regularization = 5.3 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.16259 (20) mri peak = 0.10049 (14) Left_Lateral_Ventricle (4): linear fit = 0.70 x + 0.0 (9493 voxels, overlap=0.391) Left_Lateral_Ventricle (4): linear fit = 0.70 x + 0.0 (9493 voxels, peak = 14), gca=14.1 gca peak = 0.17677 (13) mri peak = 0.09974 (16) Right_Lateral_Ventricle (43): linear fit = 1.03 x + 0.0 (11219 voxels, overlap=0.810) Right_Lateral_Ventricle (43): linear fit = 1.03 x + 0.0 (11219 voxels, peak = 13), gca=13.5 gca peak = 0.28129 (95) mri peak = 0.11838 (103) Right_Pallidum (52): linear fit = 1.08 x + 0.0 (330 voxels, overlap=0.490) Right_Pallidum (52): linear fit = 1.08 x + 0.0 (330 voxels, peak = 102), gca=102.1 gca peak = 0.16930 (96) mri peak = 0.09484 (99) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (599 voxels, overlap=1.014) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (599 voxels, peak = 100), gca=100.3 gca peak = 0.24553 (55) mri peak = 0.09524 (67) Right_Hippocampus (53): linear fit = 1.17 x + 0.0 (352 voxels, overlap=0.064) Right_Hippocampus (53): linear fit = 1.17 x + 0.0 (352 voxels, peak = 65), gca=64.6 gca peak = 0.30264 (59) mri peak = 0.07458 (67) Left_Hippocampus (17): linear fit = 1.13 x + 0.0 (766 voxels, overlap=1.015) Left_Hippocampus (17): linear fit = 1.13 x + 0.0 (766 voxels, peak = 67), gca=67.0 gca peak = 0.07580 (103) mri peak = 0.10557 (104) Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (13106 voxels, overlap=0.643) Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (13106 voxels, peak = 106), gca=105.6 gca peak = 0.07714 (104) mri peak = 0.08694 (106) Left_Cerebral_White_Matter (2): linear fit = 1.01 x + 0.0 (16594 voxels, overlap=0.659) Left_Cerebral_White_Matter (2): linear fit = 1.01 x + 0.0 (16594 voxels, peak = 106), gca=105.6 gca peak = 0.09712 (58) mri peak = 0.03408 (79) Left_Cerebral_Cortex (3): linear fit = 1.35 x + 0.0 (16500 voxels, overlap=0.018) Left_Cerebral_Cortex (3): linear fit = 1.35 x + 0.0 (16500 voxels, peak = 78), gca=78.0 gca peak = 0.11620 (58) mri peak = 0.03828 (82) Right_Cerebral_Cortex (42): linear fit = 1.35 x + 0.0 (13292 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 1.35 x + 0.0 (13292 voxels, peak = 78), gca=78.0 gca peak = 0.30970 (66) mri peak = 0.04555 (61) Right_Caudate (50): linear fit = 1.26 x + 0.0 (552 voxels, overlap=0.263) Right_Caudate (50): linear fit = 1.26 x + 0.0 (552 voxels, peak = 83), gca=83.5 gca peak = 0.15280 (69) mri peak = 0.11490 (78) Left_Caudate (11): linear fit = 1.09 x + 0.0 (701 voxels, overlap=0.652) Left_Caudate (11): linear fit = 1.09 x + 0.0 (701 voxels, peak = 75), gca=74.9 gca peak = 0.13902 (56) mri peak = 0.06427 (63) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (25127 voxels, overlap=0.797) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (25127 voxels, peak = 62), gca=62.4 gca peak = 0.14777 (55) mri peak = 0.06407 (63) Right_Cerebellum_Cortex (47): linear fit = 1.13 x + 0.0 (26033 voxels, overlap=0.721) Right_Cerebellum_Cortex (47): linear fit = 1.13 x + 0.0 (26033 voxels, peak = 62), gca=62.4 gca peak = 0.16765 (84) mri peak = 0.16993 (90) Left_Cerebellum_White_Matter (7): linear fit = 1.05 x + 0.0 (4899 voxels, overlap=0.404) Left_Cerebellum_White_Matter (7): linear fit = 1.05 x + 0.0 (4899 voxels, peak = 89), gca=88.6 gca peak = 0.18739 (84) mri peak = 0.19207 (89) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (5419 voxels, overlap=0.138) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (5419 voxels, peak = 90), gca=90.3 gca peak = 0.29869 (57) mri peak = 0.12219 (68) Left_Amygdala (18): linear fit = 1.21 x + 0.0 (157 voxels, overlap=0.061) Left_Amygdala (18): linear fit = 1.21 x + 0.0 (157 voxels, peak = 69), gca=68.7 gca peak = 0.33601 (57) uniform distribution in MR - rejecting arbitrary fit gca peak = 0.11131 (90) mri peak = 0.07822 (88) Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (3129 voxels, overlap=0.876) Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (3129 voxels, peak = 92), gca=92.2 gca peak = 0.11793 (83) mri peak = 0.08959 (89) Right_Thalamus_Proper (49): linear fit = 1.09 x + 0.0 (2546 voxels, overlap=0.498) Right_Thalamus_Proper (49): linear fit = 1.09 x + 0.0 (2546 voxels, peak = 90), gca=90.1 gca peak = 0.08324 (81) mri peak = 0.12724 (80) Left_Putamen (12): linear fit = 1.01 x + 0.0 (861 voxels, overlap=0.757) Left_Putamen (12): linear fit = 1.01 x + 0.0 (861 voxels, peak = 82), gca=82.2 gca peak = 0.10360 (77) mri peak = 0.13172 (90) Right_Putamen (51): linear fit = 1.12 x + 0.0 (282 voxels, overlap=0.067) Right_Putamen (51): linear fit = 1.12 x + 0.0 (282 voxels, peak = 86), gca=85.9 gca peak = 0.08424 (78) mri peak = 0.07609 (86) Brain_Stem (16): linear fit = 1.10 x + 0.0 (11456 voxels, overlap=0.476) Brain_Stem (16): linear fit = 1.10 x + 0.0 (11456 voxels, peak = 85), gca=85.4 gca peak = 0.12631 (89) mri peak = 0.11828 (101) Right_VentralDC (60): linear fit = 1.16 x + 0.0 (1037 voxels, overlap=0.013) Right_VentralDC (60): linear fit = 1.16 x + 0.0 (1037 voxels, peak = 104), gca=103.7 gca peak = 0.14500 (87) mri peak = 0.11083 (100) Left_VentralDC (28): linear fit = 1.13 x + 0.0 (1210 voxels, overlap=0.011) Left_VentralDC (28): linear fit = 1.13 x + 0.0 (1210 voxels, peak = 99), gca=98.7 gca peak = 0.14975 (24) mri peak = 0.15169 (21) Third_Ventricle (14): linear fit = 0.85 x + 0.0 (712 voxels, overlap=0.592) Third_Ventricle (14): linear fit = 0.85 x + 0.0 (712 voxels, peak = 20), gca=20.3 gca peak = 0.19357 (14) mri peak = 0.15443 (20) Fourth_Ventricle (15): linear fit = 1.25 x + 0.0 (526 voxels, overlap=0.605) Fourth_Ventricle (15): linear fit = 1.25 x + 0.0 (526 voxels, peak = 17), gca=17.4 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.16825 (27) gca peak Left_Thalamus = 1.00000 (94) gca peak CSF = 0.23379 (36) gca peak Left_Accumbens_area = 0.70037 (62) gca peak Left_undetermined = 1.00000 (26) gca peak Left_vessel = 0.75997 (52) gca peak Left_choroid_plexus = 0.12089 (35) gca peak Right_Inf_Lat_Vent = 0.24655 (23) gca peak Right_Amygdala = 0.33601 (57) gca peak Right_Accumbens_area = 0.45042 (65) gca peak Right_vessel = 0.82168 (52) gca peak Right_choroid_plexus = 0.14516 (37) gca peak Fifth_Ventricle = 0.65475 (32) gca peak WM_hypointensities = 0.07854 (76) gca peak non_WM_hypointensities = 0.08491 (43) gca peak Optic_Chiasm = 0.71127 (75) not using caudate to estimate GM means setting label Right_Amygdala based on Left_Amygdala = 1.21 x + 0: 69 estimating mean gm scale to be 1.24 x + 0.0 estimating mean wm scale to be 1.02 x + 0.0 estimating mean csf scale to be 0.96 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.19905 (14) mri peak = 0.10049 (14) Left_Lateral_Ventricle (4): linear fit = 1.03 x + 0.0 (9493 voxels, overlap=0.922) Left_Lateral_Ventricle (4): linear fit = 1.03 x + 0.0 (9493 voxels, peak = 14), gca=14.5 gca peak = 0.19108 (13) mri peak = 0.09974 (16) Right_Lateral_Ventricle (43): linear fit = 1.03 x + 0.0 (11219 voxels, overlap=0.746) Right_Lateral_Ventricle (43): linear fit = 1.03 x + 0.0 (11219 voxels, peak = 13), gca=13.5 gca peak = 0.23227 (102) mri peak = 0.11838 (103) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (330 voxels, overlap=1.004) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (330 voxels, peak = 103), gca=102.5 gca peak = 0.16204 (100) mri peak = 0.09484 (99) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (599 voxels, overlap=1.009) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (599 voxels, peak = 100), gca=100.5 gca peak = 0.22220 (65) mri peak = 0.09524 (67) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (352 voxels, overlap=1.001) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (352 voxels, peak = 65), gca=65.0 gca peak = 0.27545 (67) mri peak = 0.07458 (67) Left_Hippocampus (17): linear fit = 0.99 x + 0.0 (766 voxels, overlap=1.004) Left_Hippocampus (17): linear fit = 0.99 x + 0.0 (766 voxels, peak = 66), gca=66.0 gca peak = 0.07618 (105) mri peak = 0.10557 (104) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (13106 voxels, overlap=0.749) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (13106 voxels, peak = 105), gca=105.0 gca peak = 0.07820 (106) mri peak = 0.08694 (106) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (16594 voxels, overlap=0.715) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (16594 voxels, peak = 105), gca=105.5 gca peak = 0.07296 (78) mri peak = 0.03408 (79) Left_Cerebral_Cortex (3): linear fit = 0.98 x + 0.0 (16500 voxels, overlap=0.816) Left_Cerebral_Cortex (3): linear fit = 0.98 x + 0.0 (16500 voxels, peak = 76), gca=76.1 gca peak = 0.08772 (78) mri peak = 0.03828 (82) Right_Cerebral_Cortex (42): linear fit = 1.01 x + 0.0 (13292 voxels, overlap=0.886) Right_Cerebral_Cortex (42): linear fit = 1.01 x + 0.0 (13292 voxels, peak = 79), gca=79.2 gca peak = 0.21465 (83) mri peak = 0.04555 (61) Right_Caudate (50): linear fit = 1.00 x + 0.0 (552 voxels, overlap=1.006) Right_Caudate (50): linear fit = 1.00 x + 0.0 (552 voxels, peak = 83), gca=83.0 gca peak = 0.16159 (84) mri peak = 0.11490 (78) Left_Caudate (11): linear fit = 0.99 x + 0.0 (701 voxels, overlap=1.002) Left_Caudate (11): linear fit = 0.99 x + 0.0 (701 voxels, peak = 83), gca=82.7 gca peak = 0.12896 (62) mri peak = 0.06427 (63) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (25127 voxels, overlap=0.982) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (25127 voxels, peak = 62), gca=62.0 gca peak = 0.13522 (62) mri peak = 0.06407 (63) Right_Cerebellum_Cortex (47): linear fit = 0.99 x + 0.0 (26033 voxels, overlap=0.992) Right_Cerebellum_Cortex (47): linear fit = 0.99 x + 0.0 (26033 voxels, peak = 61), gca=61.1 gca peak = 0.16050 (89) mri peak = 0.16993 (90) Left_Cerebellum_White_Matter (7): linear fit = 1.01 x + 0.0 (4899 voxels, overlap=0.829) Left_Cerebellum_White_Matter (7): linear fit = 1.01 x + 0.0 (4899 voxels, peak = 90), gca=90.3 gca peak = 0.14841 (90) mri peak = 0.19207 (89) Right_Cerebellum_White_Matter (46): linear fit = 0.99 x + 0.0 (5419 voxels, overlap=0.795) Right_Cerebellum_White_Matter (46): linear fit = 0.99 x + 0.0 (5419 voxels, peak = 89), gca=88.7 gca peak = 0.29347 (70) mri peak = 0.12219 (68) Left_Amygdala (18): linear fit = 0.95 x + 0.0 (157 voxels, overlap=1.000) Left_Amygdala (18): linear fit = 0.95 x + 0.0 (157 voxels, peak = 67), gca=66.8 gca peak = 0.31686 (69) uniform distribution in MR - rejecting arbitrary fit gca peak = 0.09960 (92) mri peak = 0.07822 (88) Left_Thalamus_Proper (10): linear fit = 0.99 x + 0.0 (3129 voxels, overlap=0.889) Left_Thalamus_Proper (10): linear fit = 0.99 x + 0.0 (3129 voxels, peak = 91), gca=90.6 gca peak = 0.10542 (90) mri peak = 0.08959 (89) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (2546 voxels, overlap=0.925) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (2546 voxels, peak = 90), gca=89.6 gca peak = 0.08903 (82) mri peak = 0.12724 (80) Left_Putamen (12): linear fit = 1.00 x + 0.0 (861 voxels, overlap=0.781) Left_Putamen (12): linear fit = 1.00 x + 0.0 (861 voxels, peak = 82), gca=82.0 gca peak = 0.09441 (84) mri peak = 0.13172 (90) Right_Putamen (51): linear fit = 1.02 x + 0.0 (282 voxels, overlap=0.610) Right_Putamen (51): linear fit = 1.02 x + 0.0 (282 voxels, peak = 86), gca=86.1 gca peak = 0.07861 (86) mri peak = 0.07609 (86) Brain_Stem (16): linear fit = 1.02 x + 0.0 (11456 voxels, overlap=0.820) Brain_Stem (16): linear fit = 1.02 x + 0.0 (11456 voxels, peak = 88), gca=88.2 gca peak = 0.10546 (104) mri peak = 0.11828 (101) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1037 voxels, overlap=0.810) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1037 voxels, peak = 104), gca=104.0 gca peak = 0.16585 (97) mri peak = 0.11083 (100) Left_VentralDC (28): linear fit = 1.01 x + 0.0 (1210 voxels, overlap=0.857) Left_VentralDC (28): linear fit = 1.01 x + 0.0 (1210 voxels, peak = 98), gca=98.5 gca peak = 0.21251 (22) mri peak = 0.15169 (21) Third_Ventricle (14): linear fit = 1.00 x + 0.0 (712 voxels, overlap=1.000) Third_Ventricle (14): linear fit = 1.00 x + 0.0 (712 voxels, peak = 22), gca=22.0 gca peak = 0.16542 (20) mri peak = 0.15443 (20) Fourth_Ventricle (15): linear fit = 1.02 x + 0.0 (526 voxels, overlap=0.723) Fourth_Ventricle (15): linear fit = 1.02 x + 0.0 (526 voxels, peak = 20), gca=20.5 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.15131 (30) gca peak Left_Thalamus = 0.64095 (103) gca peak CSF = 0.25901 (35) gca peak Left_Accumbens_area = 0.62122 (68) gca peak Left_undetermined = 1.00000 (26) gca peak Left_vessel = 0.75962 (52) gca peak Left_choroid_plexus = 0.12089 (35) gca peak Right_Inf_Lat_Vent = 0.21147 (27) gca peak Right_Amygdala = 0.31686 (69) gca peak Right_Accumbens_area = 0.31286 (82) gca peak Right_vessel = 0.82168 (52) gca peak Right_choroid_plexus = 0.14516 (37) gca peak Fifth_Ventricle = 0.54107 (31) gca peak WM_hypointensities = 0.07699 (78) gca peak non_WM_hypointensities = 0.08683 (44) gca peak Optic_Chiasm = 0.61296 (75) not using caudate to estimate GM means setting label Right_Amygdala based on Left_Amygdala = 0.95 x + 0: 67 estimating mean gm scale to be 0.98 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 1.02 x + 0.0 Right_Pallidum too bright - rescaling by 0.996 (from 1.005) to 102.1 (was 102.5) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt 39474 voxels changed in iteration 0 of unlikely voxel relabeling 247 voxels changed in iteration 1 of unlikely voxel relabeling 11 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 44122 gm and wm labels changed (%28 to gray, %72 to white out of all changed labels) 239 hippocampal voxels changed. 0 amygdala voxels changed. pass 1: 56724 changed. image ll: -2.113, PF=0.500 pass 2: 13075 changed. image ll: -2.112, PF=0.500 pass 3: 4015 changed. 35218 voxels changed in iteration 0 of unlikely voxel relabeling 175 voxels changed in iteration 1 of unlikely voxel relabeling 8 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 4643 voxels changed in iteration 0 of unlikely voxel relabeling 34 voxels changed in iteration 1 of unlikely voxel relabeling 0 voxels changed in iteration 2 of unlikely voxel relabeling 4524 voxels changed in iteration 0 of unlikely voxel relabeling 31 voxels changed in iteration 1 of unlikely voxel relabeling 0 voxels changed in iteration 2 of unlikely voxel relabeling 4701 voxels changed in iteration 0 of unlikely voxel relabeling 26 voxels changed in iteration 1 of unlikely voxel relabeling 3 voxels changed in iteration 2 of unlikely voxel relabeling 1 voxels changed in iteration 3 of unlikely voxel relabeling 0 voxels changed in iteration 4 of unlikely voxel relabeling MRItoUCHAR: min=0, max=85 MRItoUCHAR: converting to UCHAR writing labeled volume to aseg.auto_noCCseg.mgz mri_ca_label utimesec 2646.289605 mri_ca_label stimesec 1.631848 mri_ca_label ru_maxrss 2090708 mri_ca_label ru_ixrss 0 mri_ca_label ru_idrss 0 mri_ca_label ru_isrss 0 mri_ca_label ru_minflt 947907 mri_ca_label ru_majflt 0 mri_ca_label ru_nswap 0 mri_ca_label ru_inblock 0 mri_ca_label ru_oublock 440 mri_ca_label ru_msgsnd 0 mri_ca_label ru_msgrcv 0 mri_ca_label ru_nsignals 0 mri_ca_label ru_nvcsw 133 mri_ca_label ru_nivcsw 12154 auto-labeling took 44 minutes and 9 seconds. mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/transforms/cc_up.lta pp_assurgent will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/transforms/cc_up.lta reading aseg from /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/aseg.auto_noCCseg.mgz reading norm from /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/norm.mgz 36865 voxels in left wm, 29702 in right wm, xrange [121, 134] searching rotation angles z=[-2 12], y=[-11 3] searching scale 1 Z rot -2.2 searching scale 1 Z rot -2.0 searching scale 1 Z rot -1.7 searching scale 1 Z rot -1.5 searching scale 1 Z rot -1.2 searching scale 1 Z rot -1.0 searching scale 1 Z rot -0.7 searching scale 1 Z rot -0.5 searching scale 1 Z rot -0.2 searching scale 1 Z rot 0.0 searching scale 1 Z rot 0.3 searching scale 1 Z rot 0.5 searching scale 1 Z rot 0.8 searching scale 1 Z rot 1.0 searching scale 1 Z rot 1.3 searching scale 1 Z rot 1.5 searching scale 1 Z rot 1.8 searching scale 1 Z rot 2.0 searching scale 1 Z rot 2.3 searching scale 1 Z rot 2.5 searching scale 1 Z rot 2.8 searching scale 1 Z rot 3.0 searching scale 1 Z rot 3.3 searching scale 1 Z rot 3.5 searching scale 1 Z rot 3.8 searching scale 1 Z rot 4.0 searching scale 1 Z rot 4.3 searching scale 1 Z rot 4.5 searching scale 1 Z rot 4.8 searching scale 1 Z rot 5.0 searching scale 1 Z rot 5.3 searching scale 1 Z rot 5.5 searching scale 1 Z rot 5.8 searching scale 1 Z rot 6.0 searching scale 1 Z rot 6.3 searching scale 1 Z rot 6.5 searching scale 1 Z rot 6.8 searching scale 1 Z rot 7.0 searching scale 1 Z rot 7.3 searching scale 1 Z rot 7.5 searching scale 1 Z rot 7.8 searching scale 1 Z rot 8.0 searching scale 1 Z rot 8.3 searching scale 1 Z rot 8.5 searching scale 1 Z rot 8.8 searching scale 1 Z rot 9.0 searching scale 1 Z rot 9.3 searching scale 1 Z rot 9.5 searching scale 1 Z rot 9.8 searching scale 1 Z rot 10.0 searching scale 1 Z rot 10.3 searching scale 1 Z rot 10.5 searching scale 1 Z rot 10.8 global minimum found at slice 126.0, rotations (-3.08, 4.01) final transformation (x=126.0, yr=-3.076, zr=4.009): 0.99612 -0.06992 -0.05354 14.38581; 0.06982 0.99755 -0.00375 17.78661; 0.05367 0.00000 0.99856 32.36621; 0.00000 0.00000 0.00000 1.00000; updating x range to be [125, 132] in xformed coordinates best xformed slice 128 cc center is found at 128 102 89 eigenvectors: 0.00013 0.00272 1.00000; 0.08659 -0.99624 0.00270; 0.99624 0.08659 -0.00037; error in mid anterior detected - correcting... error in mid anterior detected - correcting... writing aseg with callosum to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/aseg.auto.mgz... corpus callosum segmentation took 0.6 minutes #-------------------------------------- #@# Merge ASeg Fri Jul 27 14:39:07 CDT 2018 cp aseg.auto.mgz aseg.presurf.mgz Started at Fri Jul 27 13:54:20 CDT 2018 Ended at Fri Jul 27 14:39:08 CDT 2018 #@#%# recon-all-run-time-hours 0.747 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:39:08 CDT 2018 Fri Jul 27 14:39:08 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -normalization2 #-------------------------------------------- #@# Intensity Normalization2 Fri Jul 27 14:39:08 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri mri_normalize -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz assuming input volume is MGH (Van der Kouwe) MP-RAGE using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading from norm.mgz... Reading aseg aseg.presurf.mgz normalizing image... processing with aseg removing outliers in the aseg WM... 1071 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 109 gm peak at 70 (70), valley at 50 (50) csf peak at 15, setting threshold to 51 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 74 (74), valley at 49 (49) csf peak at 15, setting threshold to 54 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 2 minutes and 16 seconds. Started at Fri Jul 27 14:39:08 CDT 2018 Ended at Fri Jul 27 14:41:26 CDT 2018 #@#%# recon-all-run-time-hours 0.038 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:41:26 CDT 2018 Fri Jul 27 14:41:26 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -maskbfs #-------------------------------------------- #@# Mask BFS Fri Jul 27 14:41:26 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1454377 voxels in mask (pct= 8.67) Writing masked volume to brain.finalsurfs.mgz...done. Started at Fri Jul 27 14:41:26 CDT 2018 Ended at Fri Jul 27 14:41:27 CDT 2018 #@#%# recon-all-run-time-hours 0.000 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:41:27 CDT 2018 Fri Jul 27 14:41:27 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -segmentation #-------------------------------------------- #@# WM Segmentation Fri Jul 27 14:41:27 CDT 2018 mri_binarize --i wm.mgz --min 255 --max 255 --o wm255.mgz --count wm255.txt $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri cmdline mri_binarize.bin --i wm.mgz --min 255 --max 255 --o wm255.mgz --count wm255.txt sysname Linux hostname picasso machine x86_64 user tmhedr3 input wm.mgz frame 0 nErode3d 0 nErode2d 0 output wm255.mgz Binarizing based on threshold min 255 max 255 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 0 values in range Counting number of voxels in first frame Found 0 voxels in final mask Count: 0 0.000000 16777216 0.000000 mri_binarize done mri_binarize --i wm.mgz --min 1 --max 1 --o wm1.mgz --count wm1.txt $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri cmdline mri_binarize.bin --i wm.mgz --min 1 --max 1 --o wm1.mgz --count wm1.txt sysname Linux hostname picasso machine x86_64 user tmhedr3 input wm.mgz frame 0 nErode3d 0 nErode2d 0 output wm1.mgz Binarizing based on threshold min 1 max 1 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 0 values in range Counting number of voxels in first frame Found 0 voxels in final mask Count: 0 0.000000 16777216 0.000000 mri_binarize done rm wm1.mgz wm255.mgz mri_segment -keep -mprage brain.mgz wm.seg.mgz preserving editing changes in output volume... doing initial intensity segmentation... using local statistics to label ambiguous voxels... computing class statistics for intensity windows... WM (104.0): 104.9 +- 4.6 [79.0 --> 125.0] GM (70.0) : 67.8 +- 11.3 [30.0 --> 95.0] setting bottom of white matter range to 79.1 setting top of gray matter range to 90.3 doing initial intensity segmentation... using local statistics to label ambiguous voxels... using local geometry to label remaining ambiguous voxels... reclassifying voxels using Gaussian border classifier... removing voxels with positive offset direction... smoothing T1 volume with sigma = 0.250 removing 1-dimensional structures... 2247 sparsely connected voxels removed... thickening thin strands.... 20 segments, 4680 filled 5 bright non-wm voxels segmented. 1348 diagonally connected voxels added... white matter segmentation took 0.9 minutes writing output to wm.seg.mgz... assuming input volume is MGH (Van der Kouwe) MP-RAGE mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz preserving editing changes in input volume... auto filling took 0.68 minutes reading wm segmentation from wm.seg.mgz... 2014 voxels added to wm to prevent paths from MTL structures to cortex 5066 additional wm voxels added 0 additional wm voxels added SEG EDIT: 97377 voxels turned on, 41796 voxels turned off. propagating editing to output volume from wm.seg.mgz 115,126,128 old 110 new 110 115,126,128 old 110 new 110 writing edited volume to wm.asegedit.mgz.... mri_pretess -keep wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 37 found - 37 modified | TOTAL: 37 pass 2 (xy+): 0 found - 37 modified | TOTAL: 37 pass 1 (xy-): 28 found - 28 modified | TOTAL: 65 pass 2 (xy-): 0 found - 28 modified | TOTAL: 65 pass 1 (yz+): 14 found - 14 modified | TOTAL: 79 pass 2 (yz+): 0 found - 14 modified | TOTAL: 79 pass 1 (yz-): 34 found - 34 modified | TOTAL: 113 pass 2 (yz-): 0 found - 34 modified | TOTAL: 113 pass 1 (xz+): 31 found - 31 modified | TOTAL: 144 pass 2 (xz+): 0 found - 31 modified | TOTAL: 144 pass 1 (xz-): 23 found - 23 modified | TOTAL: 167 pass 2 (xz-): 0 found - 23 modified | TOTAL: 167 Iteration Number : 1 pass 1 (+++): 7 found - 7 modified | TOTAL: 7 pass 2 (+++): 0 found - 7 modified | TOTAL: 7 pass 1 (+++): 6 found - 6 modified | TOTAL: 13 pass 2 (+++): 0 found - 6 modified | TOTAL: 13 pass 1 (+++): 16 found - 16 modified | TOTAL: 29 pass 2 (+++): 0 found - 16 modified | TOTAL: 29 pass 1 (+++): 8 found - 8 modified | TOTAL: 37 pass 2 (+++): 0 found - 8 modified | TOTAL: 37 Iteration Number : 1 pass 1 (++): 56 found - 56 modified | TOTAL: 56 pass 2 (++): 0 found - 56 modified | TOTAL: 56 pass 1 (+-): 57 found - 57 modified | TOTAL: 113 pass 2 (+-): 0 found - 57 modified | TOTAL: 113 pass 1 (--): 43 found - 43 modified | TOTAL: 156 pass 2 (--): 1 found - 44 modified | TOTAL: 157 pass 3 (--): 0 found - 44 modified | TOTAL: 157 pass 1 (-+): 34 found - 34 modified | TOTAL: 191 pass 2 (-+): 0 found - 34 modified | TOTAL: 191 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 4 found - 4 modified | TOTAL: 4 pass 2 (yz+): 0 found - 4 modified | TOTAL: 4 pass 1 (yz-): 2 found - 2 modified | TOTAL: 6 pass 2 (yz-): 0 found - 2 modified | TOTAL: 6 pass 1 (xz+): 2 found - 2 modified | TOTAL: 8 pass 2 (xz+): 0 found - 2 modified | TOTAL: 8 pass 1 (xz-): 4 found - 4 modified | TOTAL: 12 pass 2 (xz-): 0 found - 4 modified | TOTAL: 12 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 1 found - 1 modified | TOTAL: 2 pass 2 (+-): 0 found - 1 modified | TOTAL: 2 pass 1 (--): 1 found - 1 modified | TOTAL: 3 pass 2 (--): 0 found - 1 modified | TOTAL: 3 pass 1 (-+): 0 found - 0 modified | TOTAL: 3 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 1 found - 1 modified | TOTAL: 1 pass 2 (xz+): 0 found - 1 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 1 found - 1 modified | TOTAL: 1 pass 2 (yz-): 0 found - 1 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 413 (out of 481349: 0.085801) keeping edits binarizing input wm segmentation... Ambiguous edge configurations... Searching for edits to keep ... kept 0 WM ON voxels kept 0 WM OFF voxels mri_pretess done Started at Fri Jul 27 14:41:27 CDT 2018 Ended at Fri Jul 27 14:43:14 CDT 2018 #@#%# recon-all-run-time-hours 0.030 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:43:14 CDT 2018 Fri Jul 27 14:43:14 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -fill #-------------------------------------------- #@# Fill Fri Jul 27 14:43:14 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.auto_noCCseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.06846 -0.12794 -0.02384 4.18246; 0.18670 1.19546 0.00153 -36.14499; 0.02679 -0.00350 0.99585 -15.48326; 0.00000 0.00000 0.00000 1.00000; voxel to talairach voxel transform 1.06846 -0.12794 -0.02384 4.18246; 0.18670 1.19546 0.00153 -36.14499; 0.02679 -0.00350 0.99585 -15.48326; 0.00000 0.00000 0.00000 1.00000; reading segmented volume aseg.auto_noCCseg.mgz... Looking for area (min, max) = (350, 1400) area[0] = 1140 (min = 350, max = 1400), aspect = 0.46 (min = 0.10, max = 0.75) no need to search using seed (126, 112, 91), TAL = (2.0, -37.0, 16.0) talairach voxel to voxel transform 0.91820 0.09833 0.02183 0.05190; -0.14337 0.82114 -0.00469 30.20719; -0.02520 0.00024 1.00356 15.65267; 0.00000 0.00000 0.00000 1.00000; segmentation indicates cc at (126, 112, 91) --> (2.0, -37.0, 16.0) done. writing output to filled.mgz... filling took 0.5 minutes talairach cc position changed to (2.00, -37.00, 16.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(20.00, -37.00, 16.00) SRC: (112.22, 106.26, 104.28) search lh wm seed point around talairach space (-16.00, -37.00, 16.00), SRC: (145.27, 101.10, 103.38) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram to separate WM into two hemispheres ... Find the largest connected component for each hemisphere ... Started at Fri Jul 27 14:43:14 CDT 2018 Ended at Fri Jul 27 14:43:45 CDT 2018 #@#%# recon-all-run-time-hours 0.009 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:43:45 CDT 2018 Fri Jul 27 14:43:45 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -tessellate #-------------------------------------------- #@# Tessellate lh Fri Jul 27 14:43:45 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 0 (out of 239769: 0.000000) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ slice 40: 184 vertices, 222 faces slice 50: 4569 vertices, 4745 faces slice 60: 10867 vertices, 11129 faces slice 70: 18768 vertices, 19082 faces slice 80: 27552 vertices, 27830 faces slice 90: 35305 vertices, 35618 faces slice 100: 44051 vertices, 44363 faces slice 110: 53962 vertices, 54331 faces slice 120: 64582 vertices, 64960 faces slice 130: 74898 vertices, 75310 faces slice 140: 84796 vertices, 85174 faces slice 150: 92922 vertices, 93217 faces slice 160: 99396 vertices, 99697 faces slice 170: 106380 vertices, 106665 faces slice 180: 111931 vertices, 112168 faces slice 190: 116937 vertices, 117156 faces slice 200: 119577 vertices, 119656 faces slice 210: 119632 vertices, 119690 faces slice 220: 119632 vertices, 119690 faces slice 230: 119632 vertices, 119690 faces slice 240: 119632 vertices, 119690 faces slice 250: 119632 vertices, 119690 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 119632 voxel in cpt #1: X=-58 [v=119632,e=359070,f=239380] located at (-26.276917, -13.177720, 29.094156) For the whole surface: X=-58 [v=119632,e=359070,f=239380] One single component has been found nothing to do done Started at Fri Jul 27 14:43:45 CDT 2018 Ended at Fri Jul 27 14:43:48 CDT 2018 #@#%# recon-all-run-time-hours 0.001 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:43:48 CDT 2018 Fri Jul 27 14:43:49 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -tessellate #-------------------------------------------- #@# Tessellate rh Fri Jul 27 14:43:49 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 3 found - 3 modified | TOTAL: 3 pass 2 (xy+): 0 found - 3 modified | TOTAL: 3 pass 1 (xy-): 0 found - 0 modified | TOTAL: 3 pass 1 (yz+): 0 found - 0 modified | TOTAL: 3 pass 1 (yz-): 0 found - 0 modified | TOTAL: 3 pass 1 (xz+): 1 found - 1 modified | TOTAL: 4 pass 2 (xz+): 0 found - 1 modified | TOTAL: 4 pass 1 (xz-): 0 found - 0 modified | TOTAL: 4 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 1 found - 1 modified | TOTAL: 2 pass 2 (--): 0 found - 1 modified | TOTAL: 2 pass 1 (-+): 1 found - 1 modified | TOTAL: 3 pass 2 (-+): 0 found - 1 modified | TOTAL: 3 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 7 (out of 222948: 0.003140) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ slice 50: 1407 vertices, 1495 faces slice 60: 5715 vertices, 5911 faces slice 70: 12144 vertices, 12377 faces slice 80: 19862 vertices, 20175 faces slice 90: 28643 vertices, 28907 faces slice 100: 37578 vertices, 37872 faces slice 110: 47537 vertices, 47900 faces slice 120: 58280 vertices, 58657 faces slice 130: 68344 vertices, 68698 faces slice 140: 77271 vertices, 77600 faces slice 150: 84579 vertices, 84830 faces slice 160: 90603 vertices, 90835 faces slice 170: 96792 vertices, 97032 faces slice 180: 102836 vertices, 103055 faces slice 190: 107703 vertices, 107925 faces slice 200: 110700 vertices, 110760 faces slice 210: 110768 vertices, 110808 faces slice 220: 110768 vertices, 110808 faces slice 230: 110768 vertices, 110808 faces slice 240: 110768 vertices, 110808 faces slice 250: 110768 vertices, 110808 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 110768 voxel in cpt #1: X=-40 [v=110768,e=332424,f=221616] located at (26.706215, -9.745080, 23.213158) For the whole surface: X=-40 [v=110768,e=332424,f=221616] One single component has been found nothing to do done Started at Fri Jul 27 14:43:48 CDT 2018 Ended at Fri Jul 27 14:43:53 CDT 2018 #@#%# recon-all-run-time-hours 0.001 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:43:53 CDT 2018 Fri Jul 27 14:43:53 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -smooth1 #-------------------------------------------- #@# Smooth1 lh Fri Jul 27 14:43:53 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... Started at Fri Jul 27 14:43:53 CDT 2018 Ended at Fri Jul 27 14:43:56 CDT 2018 #@#%# recon-all-run-time-hours 0.001 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:43:56 CDT 2018 Fri Jul 27 14:43:56 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -smooth1 #-------------------------------------------- #@# Smooth1 rh Fri Jul 27 14:43:57 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... Started at Fri Jul 27 14:43:56 CDT 2018 Ended at Fri Jul 27 14:43:59 CDT 2018 #@#%# recon-all-run-time-hours 0.001 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:43:59 CDT 2018 Fri Jul 27 14:44:00 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -inflate1 #-------------------------------------------- #@# Inflation1 lh Fri Jul 27 14:44:00 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix Not saving sulc Reading ../surf/lh.smoothwm.nofix avg radius = 46.3 mm, total surface area = 64143 mm^2 writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.3 minutes step 000: RMS=0.154 (target=0.015) step 005: RMS=0.118 (target=0.015) step 010: RMS=0.088 (target=0.015) step 015: RMS=0.074 (target=0.015) step 020: RMS=0.063 (target=0.015) step 025: RMS=0.057 (target=0.015) step 030: RMS=0.051 (target=0.015) step 035: RMS=0.048 (target=0.015) step 040: RMS=0.045 (target=0.015) step 045: RMS=0.043 (target=0.015) step 050: RMS=0.041 (target=0.015) step 055: RMS=0.040 (target=0.015) step 060: RMS=0.039 (target=0.015) inflation complete. Not saving sulc mris_inflate utimesec 19.066879 mris_inflate stimesec 0.117795 mris_inflate ru_maxrss 154100 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 20306 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 8424 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 410 mris_inflate ru_nivcsw 1277 Started at Fri Jul 27 14:43:59 CDT 2018 Ended at Fri Jul 27 14:44:19 CDT 2018 #@#%# recon-all-run-time-hours 0.006 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:44:19 CDT 2018 Fri Jul 27 14:44:19 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -inflate1 #-------------------------------------------- #@# Inflation1 rh Fri Jul 27 14:44:19 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix Not saving sulc Reading ../surf/rh.smoothwm.nofix avg radius = 44.6 mm, total surface area = 59233 mm^2 writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.3 minutes step 000: RMS=0.155 (target=0.015) step 005: RMS=0.118 (target=0.015) step 010: RMS=0.090 (target=0.015) step 015: RMS=0.076 (target=0.015) step 020: RMS=0.067 (target=0.015) step 025: RMS=0.062 (target=0.015) step 030: RMS=0.056 (target=0.015) step 035: RMS=0.053 (target=0.015) step 040: RMS=0.051 (target=0.015) step 045: RMS=0.049 (target=0.015) step 050: RMS=0.048 (target=0.015) step 055: RMS=0.047 (target=0.015) step 060: RMS=0.046 (target=0.015) inflation complete. Not saving sulc mris_inflate utimesec 17.582413 mris_inflate stimesec 0.038994 mris_inflate ru_maxrss 142944 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 18538 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 7800 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 443 mris_inflate ru_nivcsw 70 Started at Fri Jul 27 14:44:19 CDT 2018 Ended at Fri Jul 27 14:44:37 CDT 2018 #@#%# recon-all-run-time-hours 0.005 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:44:37 CDT 2018 Fri Jul 27 14:44:37 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -qsphere #-------------------------------------------- #@# QSphere lh Fri Jul 27 14:44:38 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.04 +- 0.61 (0.00-->9.07) (max @ vno 41176 --> 42078) face area 0.03 +- 0.03 (-0.07-->0.96) == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.321... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=177.044, avgs=0 005/300: dt: 0.9000, rms radial error=176.784, avgs=0 010/300: dt: 0.9000, rms radial error=176.229, avgs=0 015/300: dt: 0.9000, rms radial error=175.500, avgs=0 020/300: dt: 0.9000, rms radial error=174.671, avgs=0 025/300: dt: 0.9000, rms radial error=173.784, avgs=0 030/300: dt: 0.9000, rms radial error=172.865, avgs=0 035/300: dt: 0.9000, rms radial error=171.928, avgs=0 040/300: dt: 0.9000, rms radial error=170.984, avgs=0 045/300: dt: 0.9000, rms radial error=170.036, avgs=0 050/300: dt: 0.9000, rms radial error=169.089, avgs=0 055/300: dt: 0.9000, rms radial error=168.144, avgs=0 060/300: dt: 0.9000, rms radial error=167.202, avgs=0 065/300: dt: 0.9000, rms radial error=166.264, avgs=0 070/300: dt: 0.9000, rms radial error=165.331, avgs=0 075/300: dt: 0.9000, rms radial error=164.402, avgs=0 080/300: dt: 0.9000, rms radial error=163.478, avgs=0 085/300: dt: 0.9000, rms radial error=162.558, avgs=0 090/300: dt: 0.9000, rms radial error=161.643, avgs=0 095/300: dt: 0.9000, rms radial error=160.733, avgs=0 100/300: dt: 0.9000, rms radial error=159.828, avgs=0 105/300: dt: 0.9000, rms radial error=158.928, avgs=0 110/300: dt: 0.9000, rms radial error=158.033, avgs=0 115/300: dt: 0.9000, rms radial error=157.142, avgs=0 120/300: dt: 0.9000, rms radial error=156.256, avgs=0 125/300: dt: 0.9000, rms radial error=155.375, avgs=0 130/300: dt: 0.9000, rms radial error=154.499, avgs=0 135/300: dt: 0.9000, rms radial error=153.628, avgs=0 140/300: dt: 0.9000, rms radial error=152.761, avgs=0 145/300: dt: 0.9000, rms radial error=151.899, avgs=0 150/300: dt: 0.9000, rms radial error=151.042, avgs=0 155/300: dt: 0.9000, rms radial error=150.190, avgs=0 160/300: dt: 0.9000, rms radial error=149.342, avgs=0 165/300: dt: 0.9000, rms radial error=148.500, avgs=0 170/300: dt: 0.9000, rms radial error=147.662, avgs=0 175/300: dt: 0.9000, rms radial error=146.828, avgs=0 180/300: dt: 0.9000, rms radial error=146.000, avgs=0 185/300: dt: 0.9000, rms radial error=145.176, avgs=0 190/300: dt: 0.9000, rms radial error=144.356, avgs=0 195/300: dt: 0.9000, rms radial error=143.541, avgs=0 200/300: dt: 0.9000, rms radial error=142.731, avgs=0 205/300: dt: 0.9000, rms radial error=141.925, avgs=0 210/300: dt: 0.9000, rms radial error=141.124, avgs=0 215/300: dt: 0.9000, rms radial error=140.327, avgs=0 220/300: dt: 0.9000, rms radial error=139.535, avgs=0 225/300: dt: 0.9000, rms radial error=138.747, avgs=0 230/300: dt: 0.9000, rms radial error=137.964, avgs=0 235/300: dt: 0.9000, rms radial error=137.185, avgs=0 240/300: dt: 0.9000, rms radial error=136.410, avgs=0 245/300: dt: 0.9000, rms radial error=135.640, avgs=0 250/300: dt: 0.9000, rms radial error=134.874, avgs=0 255/300: dt: 0.9000, rms radial error=134.113, avgs=0 260/300: dt: 0.9000, rms radial error=133.355, avgs=0 265/300: dt: 0.9000, rms radial error=132.603, avgs=0 270/300: dt: 0.9000, rms radial error=131.854, avgs=0 275/300: dt: 0.9000, rms radial error=131.110, avgs=0 280/300: dt: 0.9000, rms radial error=130.370, avgs=0 285/300: dt: 0.9000, rms radial error=129.633, avgs=0 290/300: dt: 0.9000, rms radial error=128.902, avgs=0 295/300: dt: 0.9000, rms radial error=128.174, avgs=0 300/300: dt: 0.9000, rms radial error=127.450, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 13822.42 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00018 epoch 2 (K=40.0), pass 1, starting sse = 2261.11 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00029 epoch 3 (K=160.0), pass 1, starting sse = 234.22 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.10/11 = 0.00932 epoch 4 (K=640.0), pass 1, starting sse = 16.73 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.17/15 = 0.01152 final distance error %27.10 writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.04 hours mris_sphere utimesec 129.276228 mris_sphere stimesec 0.041997 mris_sphere ru_maxrss 154304 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 20359 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 0 mris_sphere ru_oublock 8424 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 451 mris_sphere ru_nivcsw 222 FSRUNTIME@ mris_sphere 0.0359 hours 1 threads Started at Fri Jul 27 14:44:37 CDT 2018 Ended at Fri Jul 27 14:46:47 CDT 2018 #@#%# recon-all-run-time-hours 0.036 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:46:47 CDT 2018 Fri Jul 27 14:46:47 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -qsphere #-------------------------------------------- #@# QSphere rh Fri Jul 27 14:46:47 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.08 +- 0.63 (0.00-->8.01) (max @ vno 39863 --> 39864) face area 0.03 +- 0.03 (-0.17-->0.80) == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.329... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=177.362, avgs=0 005/300: dt: 0.9000, rms radial error=177.103, avgs=0 010/300: dt: 0.9000, rms radial error=176.546, avgs=0 015/300: dt: 0.9000, rms radial error=175.815, avgs=0 020/300: dt: 0.9000, rms radial error=174.981, avgs=0 025/300: dt: 0.9000, rms radial error=174.089, avgs=0 030/300: dt: 0.9000, rms radial error=173.164, avgs=0 035/300: dt: 0.9000, rms radial error=172.222, avgs=0 040/300: dt: 0.9000, rms radial error=171.273, avgs=0 045/300: dt: 0.9000, rms radial error=170.320, avgs=0 050/300: dt: 0.9000, rms radial error=169.369, avgs=0 055/300: dt: 0.9000, rms radial error=168.420, avgs=0 060/300: dt: 0.9000, rms radial error=167.475, avgs=0 065/300: dt: 0.9000, rms radial error=166.534, avgs=0 070/300: dt: 0.9000, rms radial error=165.598, avgs=0 075/300: dt: 0.9000, rms radial error=164.666, avgs=0 080/300: dt: 0.9000, rms radial error=163.740, avgs=0 085/300: dt: 0.9000, rms radial error=162.819, avgs=0 090/300: dt: 0.9000, rms radial error=161.904, avgs=0 095/300: dt: 0.9000, rms radial error=160.993, avgs=0 100/300: dt: 0.9000, rms radial error=160.087, avgs=0 105/300: dt: 0.9000, rms radial error=159.186, avgs=0 110/300: dt: 0.9000, rms radial error=158.290, avgs=0 115/300: dt: 0.9000, rms radial error=157.399, avgs=0 120/300: dt: 0.9000, rms radial error=156.512, avgs=0 125/300: dt: 0.9000, rms radial error=155.630, avgs=0 130/300: dt: 0.9000, rms radial error=154.753, avgs=0 135/300: dt: 0.9000, rms radial error=153.881, avgs=0 140/300: dt: 0.9000, rms radial error=153.014, avgs=0 145/300: dt: 0.9000, rms radial error=152.151, avgs=0 150/300: dt: 0.9000, rms radial error=151.293, avgs=0 155/300: dt: 0.9000, rms radial error=150.440, avgs=0 160/300: dt: 0.9000, rms radial error=149.592, avgs=0 165/300: dt: 0.9000, rms radial error=148.748, avgs=0 170/300: dt: 0.9000, rms radial error=147.909, avgs=0 175/300: dt: 0.9000, rms radial error=147.075, avgs=0 180/300: dt: 0.9000, rms radial error=146.245, avgs=0 185/300: dt: 0.9000, rms radial error=145.420, avgs=0 190/300: dt: 0.9000, rms radial error=144.600, avgs=0 195/300: dt: 0.9000, rms radial error=143.784, avgs=0 200/300: dt: 0.9000, rms radial error=142.972, avgs=0 205/300: dt: 0.9000, rms radial error=142.165, avgs=0 210/300: dt: 0.9000, rms radial error=141.363, avgs=0 215/300: dt: 0.9000, rms radial error=140.565, avgs=0 220/300: dt: 0.9000, rms radial error=139.771, avgs=0 225/300: dt: 0.9000, rms radial error=138.982, avgs=0 230/300: dt: 0.9000, rms radial error=138.197, avgs=0 235/300: dt: 0.9000, rms radial error=137.417, avgs=0 240/300: dt: 0.9000, rms radial error=136.641, avgs=0 245/300: dt: 0.9000, rms radial error=135.869, avgs=0 250/300: dt: 0.9000, rms radial error=135.102, avgs=0 255/300: dt: 0.9000, rms radial error=134.339, avgs=0 260/300: dt: 0.9000, rms radial error=133.580, avgs=0 265/300: dt: 0.9000, rms radial error=132.825, avgs=0 270/300: dt: 0.9000, rms radial error=132.075, avgs=0 275/300: dt: 0.9000, rms radial error=131.329, avgs=0 280/300: dt: 0.9000, rms radial error=130.587, avgs=0 285/300: dt: 0.9000, rms radial error=129.849, avgs=0 290/300: dt: 0.9000, rms radial error=129.115, avgs=0 295/300: dt: 0.9000, rms radial error=128.386, avgs=0 300/300: dt: 0.9000, rms radial error=127.661, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 12672.15 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00011 epoch 2 (K=40.0), pass 1, starting sse = 2046.64 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00026 epoch 3 (K=160.0), pass 1, starting sse = 219.57 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.10/11 = 0.00940 epoch 4 (K=640.0), pass 1, starting sse = 16.58 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.10/12 = 0.00825 final distance error %26.75 writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.03 hours mris_sphere utimesec 110.192910 mris_sphere stimesec 0.032999 mris_sphere ru_maxrss 143136 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 18589 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 0 mris_sphere ru_oublock 7800 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 435 mris_sphere ru_nivcsw 428 FSRUNTIME@ mris_sphere 0.0306 hours 1 threads Started at Fri Jul 27 14:46:47 CDT 2018 Ended at Fri Jul 27 14:48:38 CDT 2018 #@#%# recon-all-run-time-hours 0.031 recon-all -s pp_assurgent finished without error at Fri Jul 27 14:48:38 CDT 2018 Fri Jul 27 14:48:38 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -fix #-------------------------------------------- #@# Fix Topology Copy lh Fri Jul 27 14:48:38 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts cp ../surf/lh.orig.nofix ../surf/lh.orig cp ../surf/lh.inflated.nofix ../surf/lh.inflated #@# Fix Topology lh Fri Jul 27 14:48:38 CDT 2018 mris_fix_topology -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 pp_assurgent lh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ before topology correction, eno=-58 (nv=119632, nf=239380, ne=359070, g=30) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 9 iterations marking ambiguous vertices... 4116 ambiguous faces found in tessellation segmenting defects... 40 defects found, arbitrating ambiguous regions... analyzing neighboring defects... 40 defects to be corrected 0 vertices coincident reading input surface /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -9.4171 (-4.7085) -vertex loglikelihood: -6.5848 (-3.2924) -normal dot loglikelihood: -3.6078 (-3.6078) -quad curv loglikelihood: -6.1200 (-3.0600) Total Loglikelihood : -25.7296 CORRECTING DEFECT 0 (vertices=80, convex hull=115, v0=5202) After retessellation of defect 0 (v0=5202), euler #=-36 (117093,350153,233024) : difference with theory (-37) = -1 CORRECTING DEFECT 1 (vertices=69, convex hull=69, v0=6968) After retessellation of defect 1 (v0=6968), euler #=-35 (117104,350213,233074) : difference with theory (-36) = -1 CORRECTING DEFECT 2 (vertices=89, convex hull=36, v0=9937) After retessellation of defect 2 (v0=9937), euler #=-34 (117113,350251,233104) : difference with theory (-35) = -1 CORRECTING DEFECT 3 (vertices=490, convex hull=255, v0=11303) After retessellation of defect 3 (v0=11303), euler #=-33 (117237,350751,233481) : difference with theory (-34) = -1 CORRECTING DEFECT 4 (vertices=17, convex hull=34, v0=12070) After retessellation of defect 4 (v0=12070), euler #=-32 (117240,350770,233498) : difference with theory (-33) = -1 CORRECTING DEFECT 5 (vertices=30, convex hull=55, v0=13486) After retessellation of defect 5 (v0=13486), euler #=-31 (117249,350817,233537) : difference with theory (-32) = -1 CORRECTING DEFECT 6 (vertices=83, convex hull=144, v0=13859) After retessellation of defect 6 (v0=13859), euler #=-30 (117289,351007,233688) : difference with theory (-31) = -1 CORRECTING DEFECT 7 (vertices=69, convex hull=53, v0=16739) After retessellation of defect 7 (v0=16739), euler #=-29 (117302,351067,233736) : difference with theory (-30) = -1 CORRECTING DEFECT 8 (vertices=27, convex hull=38, v0=34597) After retessellation of defect 8 (v0=34597), euler #=-28 (117310,351103,233765) : difference with theory (-29) = -1 CORRECTING DEFECT 9 (vertices=11, convex hull=27, v0=37557) After retessellation of defect 9 (v0=37557), euler #=-27 (117313,351118,233778) : difference with theory (-28) = -1 CORRECTING DEFECT 10 (vertices=56, convex hull=98, v0=37989) After retessellation of defect 10 (v0=37989), euler #=-26 (117354,351283,233903) : difference with theory (-27) = -1 CORRECTING DEFECT 11 (vertices=36, convex hull=77, v0=38763) After retessellation of defect 11 (v0=38763), euler #=-25 (117365,351347,233957) : difference with theory (-26) = -1 CORRECTING DEFECT 12 (vertices=36, convex hull=48, v0=39415) After retessellation of defect 12 (v0=39415), euler #=-24 (117380,351407,234003) : difference with theory (-25) = -1 CORRECTING DEFECT 13 (vertices=5, convex hull=25, v0=41086) After retessellation of defect 13 (v0=41086), euler #=-23 (117382,351421,234016) : difference with theory (-24) = -1 CORRECTING DEFECT 14 (vertices=57, convex hull=96, v0=41164) After retessellation of defect 14 (v0=41164), euler #=-22 (117419,351573,234132) : difference with theory (-23) = -1 CORRECTING DEFECT 15 (vertices=37, convex hull=72, v0=45663) After retessellation of defect 15 (v0=45663), euler #=-21 (117441,351670,234208) : difference with theory (-22) = -1 CORRECTING DEFECT 16 (vertices=15, convex hull=26, v0=47664) After retessellation of defect 16 (v0=47664), euler #=-20 (117446,351692,234226) : difference with theory (-21) = -1 CORRECTING DEFECT 17 (vertices=8, convex hull=28, v0=47674) After retessellation of defect 17 (v0=47674), euler #=-19 (117451,351713,234243) : difference with theory (-20) = -1 CORRECTING DEFECT 18 (vertices=31, convex hull=86, v0=47770) After retessellation of defect 18 (v0=47770), euler #=-18 (117460,351773,234295) : difference with theory (-19) = -1 CORRECTING DEFECT 19 (vertices=20, convex hull=40, v0=51580) After retessellation of defect 19 (v0=51580), euler #=-17 (117469,351814,234328) : difference with theory (-18) = -1 CORRECTING DEFECT 20 (vertices=7, convex hull=21, v0=55401) After retessellation of defect 20 (v0=55401), euler #=-16 (117473,351830,234341) : difference with theory (-17) = -1 CORRECTING DEFECT 21 (vertices=104, convex hull=143, v0=56891) After retessellation of defect 21 (v0=56891), euler #=-15 (117491,351950,234444) : difference with theory (-16) = -1 CORRECTING DEFECT 22 (vertices=28, convex hull=75, v0=65439) After retessellation of defect 22 (v0=65439), euler #=-14 (117511,352043,234518) : difference with theory (-15) = -1 CORRECTING DEFECT 23 (vertices=26, convex hull=28, v0=67310) After retessellation of defect 23 (v0=67310), euler #=-13 (117515,352062,234534) : difference with theory (-14) = -1 CORRECTING DEFECT 24 (vertices=18, convex hull=29, v0=70593) After retessellation of defect 24 (v0=70593), euler #=-12 (117517,352076,234547) : difference with theory (-13) = -1 CORRECTING DEFECT 25 (vertices=25, convex hull=58, v0=72481) After retessellation of defect 25 (v0=72481), euler #=-11 (117526,352126,234589) : difference with theory (-12) = -1 CORRECTING DEFECT 26 (vertices=35, convex hull=29, v0=77702) After retessellation of defect 26 (v0=77702), euler #=-10 (117529,352145,234606) : difference with theory (-11) = -1 CORRECTING DEFECT 27 (vertices=27, convex hull=25, v0=78445) After retessellation of defect 27 (v0=78445), euler #=-9 (117534,352170,234627) : difference with theory (-10) = -1 CORRECTING DEFECT 28 (vertices=121, convex hull=106, v0=79700) After retessellation of defect 28 (v0=79700), euler #=-8 (117586,352374,234780) : difference with theory (-9) = -1 CORRECTING DEFECT 29 (vertices=31, convex hull=87, v0=80850) After retessellation of defect 29 (v0=80850), euler #=-7 (117596,352440,234837) : difference with theory (-8) = -1 CORRECTING DEFECT 30 (vertices=16, convex hull=35, v0=81487) After retessellation of defect 30 (v0=81487), euler #=-6 (117598,352459,234855) : difference with theory (-7) = -1 CORRECTING DEFECT 31 (vertices=449, convex hull=238, v0=83519) After retessellation of defect 31 (v0=83519), euler #=-5 (117686,352841,235150) : difference with theory (-6) = -1 CORRECTING DEFECT 32 (vertices=222, convex hull=179, v0=84553) After retessellation of defect 32 (v0=84553), euler #=-5 (117719,353027,235303) : difference with theory (-5) = 0 CORRECTING DEFECT 33 (vertices=33, convex hull=39, v0=99878) After retessellation of defect 33 (v0=99878), euler #=-4 (117728,353067,235335) : difference with theory (-4) = 0 CORRECTING DEFECT 34 (vertices=31, convex hull=60, v0=101754) After retessellation of defect 34 (v0=101754), euler #=-3 (117749,353156,235404) : difference with theory (-3) = 0 CORRECTING DEFECT 35 (vertices=11, convex hull=21, v0=102135) After retessellation of defect 35 (v0=102135), euler #=-2 (117750,353165,235413) : difference with theory (-2) = 0 CORRECTING DEFECT 36 (vertices=44, convex hull=34, v0=105450) After retessellation of defect 36 (v0=105450), euler #=-1 (117757,353202,235444) : difference with theory (-1) = 0 CORRECTING DEFECT 37 (vertices=73, convex hull=98, v0=108666) After retessellation of defect 37 (v0=108666), euler #=0 (117786,353330,235544) : difference with theory (0) = 0 CORRECTING DEFECT 38 (vertices=6, convex hull=40, v0=110856) After retessellation of defect 38 (v0=110856), euler #=1 (117789,353350,235562) : difference with theory (1) = 0 CORRECTING DEFECT 39 (vertices=11, convex hull=33, v0=112541) After retessellation of defect 39 (v0=112541), euler #=2 (117791,353367,235578) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.23 (0.07-->13.32) (max @ vno 88099 --> 91292) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.23 (0.07-->13.32) (max @ vno 88099 --> 91292) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 149 mutations (35.8%), 267 crossovers (64.2%), 203 vertices were eliminated building final representation... 1841 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=117791, nf=235578, ne=353367, g=0) writing corrected surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 16.3 minutes 0 defective edges removing intersecting faces 000: 292 intersecting mris_fix_topology utimesec 980.194867 mris_fix_topology stimesec 0.187990 mris_fix_topology ru_maxrss 380924 mris_fix_topology ru_ixrss 0 mris_fix_topology ru_idrss 0 mris_fix_topology ru_isrss 0 mris_fix_topology ru_minflt 48644 mris_fix_topology ru_majflt 0 mris_fix_topology ru_nswap 0 mris_fix_topology ru_inblock 0 mris_fix_topology ru_oublock 11096 mris_fix_topology ru_msgsnd 0 mris_fix_topology ru_msgrcv 0 mris_fix_topology ru_nsignals 0 mris_fix_topology ru_nvcsw 549 mris_fix_topology ru_nivcsw 6795 FSRUNTIME@ mris_fix_topology lh 0.2725 hours 1 threads mris_euler_number ../surf/lh.orig euler # = v-e+f = 2g-2: 117791 - 353367 + 235578 = 2 --> 0 holes F =2V-4: 235578 = 235582-4 (0) 2E=3F: 706734 = 706734 (0) total defect index = 0 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_remove_intersection ../surf/lh.orig ../surf/lh.orig intersection removal took 0.00 hours removing intersecting faces 000: 27 intersecting writing corrected surface to ../surf/lh.orig rm ../surf/lh.inflated Started at Fri Jul 27 14:48:38 CDT 2018 Ended at Fri Jul 27 15:05:02 CDT 2018 #@#%# recon-all-run-time-hours 0.273 recon-all -s pp_assurgent finished without error at Fri Jul 27 15:05:02 CDT 2018 Fri Jul 27 15:05:02 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -fix #-------------------------------------------- #@# Fix Topology Copy rh Fri Jul 27 15:05:02 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts cp ../surf/rh.orig.nofix ../surf/rh.orig cp ../surf/rh.inflated.nofix ../surf/rh.inflated #@# Fix Topology rh Fri Jul 27 15:05:02 CDT 2018 mris_fix_topology -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 pp_assurgent rh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ before topology correction, eno=-40 (nv=110768, nf=221616, ne=332424, g=21) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 11 iterations marking ambiguous vertices... 4323 ambiguous faces found in tessellation segmenting defects... 37 defects found, arbitrating ambiguous regions... analyzing neighboring defects... 37 defects to be corrected 0 vertices coincident reading input surface /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -9.4338 (-4.7169) -vertex loglikelihood: -6.7051 (-3.3526) -normal dot loglikelihood: -3.6431 (-3.6431) -quad curv loglikelihood: -6.2489 (-3.1245) Total Loglikelihood : -26.0310 CORRECTING DEFECT 0 (vertices=402, convex hull=155, v0=7132) After retessellation of defect 0 (v0=7132), euler #=-33 (108148,323433,215252) : difference with theory (-34) = -1 CORRECTING DEFECT 1 (vertices=30, convex hull=78, v0=14869) After retessellation of defect 1 (v0=14869), euler #=-32 (108160,323498,215306) : difference with theory (-33) = -1 CORRECTING DEFECT 2 (vertices=107, convex hull=137, v0=21232) After retessellation of defect 2 (v0=21232), euler #=-31 (108220,323741,215490) : difference with theory (-32) = -1 CORRECTING DEFECT 3 (vertices=71, convex hull=84, v0=22702) After retessellation of defect 3 (v0=22702), euler #=-30 (108255,323880,215595) : difference with theory (-31) = -1 CORRECTING DEFECT 4 (vertices=25, convex hull=55, v0=23666) After retessellation of defect 4 (v0=23666), euler #=-29 (108268,323942,215645) : difference with theory (-30) = -1 CORRECTING DEFECT 5 (vertices=230, convex hull=137, v0=41902) After retessellation of defect 5 (v0=41902), euler #=-28 (108317,324153,215808) : difference with theory (-29) = -1 CORRECTING DEFECT 6 (vertices=31, convex hull=64, v0=48317) After retessellation of defect 6 (v0=48317), euler #=-27 (108327,324209,215855) : difference with theory (-28) = -1 CORRECTING DEFECT 7 (vertices=8, convex hull=34, v0=48620) After retessellation of defect 7 (v0=48620), euler #=-26 (108328,324226,215872) : difference with theory (-27) = -1 CORRECTING DEFECT 8 (vertices=38, convex hull=78, v0=48917) After retessellation of defect 8 (v0=48917), euler #=-25 (108345,324307,215937) : difference with theory (-26) = -1 CORRECTING DEFECT 9 (vertices=23, convex hull=37, v0=52765) After retessellation of defect 9 (v0=52765), euler #=-24 (108347,324324,215953) : difference with theory (-25) = -1 CORRECTING DEFECT 10 (vertices=32, convex hull=71, v0=53627) After retessellation of defect 10 (v0=53627), euler #=-24 (108356,324384,216004) : difference with theory (-24) = 0 CORRECTING DEFECT 11 (vertices=12, convex hull=23, v0=53828) After retessellation of defect 11 (v0=53828), euler #=-23 (108357,324396,216016) : difference with theory (-23) = 0 CORRECTING DEFECT 12 (vertices=12, convex hull=17, v0=62878) After retessellation of defect 12 (v0=62878), euler #=-22 (108361,324414,216031) : difference with theory (-22) = 0 CORRECTING DEFECT 13 (vertices=11, convex hull=26, v0=63372) After retessellation of defect 13 (v0=63372), euler #=-21 (108365,324432,216046) : difference with theory (-21) = 0 CORRECTING DEFECT 14 (vertices=184, convex hull=165, v0=65322) After retessellation of defect 14 (v0=65322), euler #=-20 (108374,324545,216151) : difference with theory (-20) = 0 CORRECTING DEFECT 15 (vertices=110, convex hull=72, v0=65560) After retessellation of defect 15 (v0=65560), euler #=-19 (108392,324629,216218) : difference with theory (-19) = 0 CORRECTING DEFECT 16 (vertices=10, convex hull=24, v0=66291) After retessellation of defect 16 (v0=66291), euler #=-18 (108396,324650,216236) : difference with theory (-18) = 0 CORRECTING DEFECT 17 (vertices=312, convex hull=238, v0=73667) After retessellation of defect 17 (v0=73667), euler #=-17 (108462,324972,216493) : difference with theory (-17) = 0 CORRECTING DEFECT 18 (vertices=28, convex hull=26, v0=75364) After retessellation of defect 18 (v0=75364), euler #=-16 (108466,324992,216510) : difference with theory (-16) = 0 CORRECTING DEFECT 19 (vertices=241, convex hull=147, v0=77166) After retessellation of defect 19 (v0=77166), euler #=-15 (108525,325241,216701) : difference with theory (-15) = 0 CORRECTING DEFECT 20 (vertices=14, convex hull=29, v0=81892) After retessellation of defect 20 (v0=81892), euler #=-14 (108526,325252,216712) : difference with theory (-14) = 0 CORRECTING DEFECT 21 (vertices=124, convex hull=44, v0=82530) After retessellation of defect 21 (v0=82530), euler #=-13 (108534,325289,216742) : difference with theory (-13) = 0 CORRECTING DEFECT 22 (vertices=10, convex hull=21, v0=86555) After retessellation of defect 22 (v0=86555), euler #=-12 (108537,325304,216755) : difference with theory (-12) = 0 CORRECTING DEFECT 23 (vertices=56, convex hull=50, v0=87167) After retessellation of defect 23 (v0=87167), euler #=-11 (108548,325354,216795) : difference with theory (-11) = 0 CORRECTING DEFECT 24 (vertices=77, convex hull=68, v0=88368) After retessellation of defect 24 (v0=88368), euler #=-10 (108563,325429,216856) : difference with theory (-10) = 0 CORRECTING DEFECT 25 (vertices=11, convex hull=24, v0=93101) After retessellation of defect 25 (v0=93101), euler #=-9 (108563,325437,216865) : difference with theory (-9) = 0 CORRECTING DEFECT 26 (vertices=41, convex hull=29, v0=98770) After retessellation of defect 26 (v0=98770), euler #=-8 (108569,325466,216889) : difference with theory (-8) = 0 CORRECTING DEFECT 27 (vertices=100, convex hull=126, v0=99361) After retessellation of defect 27 (v0=99361), euler #=-7 (108619,325674,217048) : difference with theory (-7) = 0 CORRECTING DEFECT 28 (vertices=39, convex hull=38, v0=99793) After retessellation of defect 28 (v0=99793), euler #=-6 (108623,325701,217072) : difference with theory (-6) = 0 CORRECTING DEFECT 29 (vertices=107, convex hull=103, v0=101738) After retessellation of defect 29 (v0=101738), euler #=-5 (108680,325918,217233) : difference with theory (-5) = 0 CORRECTING DEFECT 30 (vertices=53, convex hull=62, v0=102229) After retessellation of defect 30 (v0=102229), euler #=-4 (108684,325962,217274) : difference with theory (-4) = 0 CORRECTING DEFECT 31 (vertices=7, convex hull=23, v0=104356) After retessellation of defect 31 (v0=104356), euler #=-3 (108685,325972,217284) : difference with theory (-3) = 0 CORRECTING DEFECT 32 (vertices=69, convex hull=41, v0=105623) After retessellation of defect 32 (v0=105623), euler #=-2 (108688,325996,217306) : difference with theory (-2) = 0 CORRECTING DEFECT 33 (vertices=25, convex hull=67, v0=107541) After retessellation of defect 33 (v0=107541), euler #=-1 (108700,326057,217356) : difference with theory (-1) = 0 CORRECTING DEFECT 34 (vertices=21, convex hull=59, v0=108386) After retessellation of defect 34 (v0=108386), euler #=0 (108712,326117,217405) : difference with theory (0) = 0 CORRECTING DEFECT 35 (vertices=21, convex hull=22, v0=110048) After retessellation of defect 35 (v0=110048), euler #=1 (108714,326130,217417) : difference with theory (1) = 0 CORRECTING DEFECT 36 (vertices=6, convex hull=20, v0=110263) After retessellation of defect 36 (v0=110263), euler #=2 (108714,326136,217424) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.89 +- 0.23 (0.13-->11.77) (max @ vno 45531 --> 49825) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.89 +- 0.23 (0.13-->11.77) (max @ vno 45531 --> 49825) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 141 mutations (38.2%), 228 crossovers (61.8%), 179 vertices were eliminated building final representation... 2054 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=108714, nf=217424, ne=326136, g=0) writing corrected surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 14.8 minutes 0 defective edges removing intersecting faces 000: 302 intersecting 001: 2 intersecting mris_fix_topology utimesec 886.659216 mris_fix_topology stimesec 0.468951 mris_fix_topology ru_maxrss 351548 mris_fix_topology ru_ixrss 0 mris_fix_topology ru_idrss 0 mris_fix_topology ru_isrss 0 mris_fix_topology ru_minflt 48960 mris_fix_topology ru_majflt 0 mris_fix_topology ru_nswap 0 mris_fix_topology ru_inblock 0 mris_fix_topology ru_oublock 10264 mris_fix_topology ru_msgsnd 0 mris_fix_topology ru_msgrcv 0 mris_fix_topology ru_nsignals 0 mris_fix_topology ru_nvcsw 475 mris_fix_topology ru_nivcsw 17607 FSRUNTIME@ mris_fix_topology rh 0.2467 hours 1 threads mris_euler_number ../surf/rh.orig euler # = v-e+f = 2g-2: 108714 - 326136 + 217424 = 2 --> 0 holes F =2V-4: 217424 = 217428-4 (0) 2E=3F: 652272 = 652272 (0) total defect index = 0 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours removing intersecting faces 000: 60 intersecting writing corrected surface to ../surf/rh.orig rm ../surf/rh.inflated Started at Fri Jul 27 15:05:02 CDT 2018 Ended at Fri Jul 27 15:19:53 CDT 2018 #@#%# recon-all-run-time-hours 0.248 recon-all -s pp_assurgent finished without error at Fri Jul 27 15:19:53 CDT 2018 Fri Jul 27 15:19:53 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -white #-------------------------------------------- #@# Make White Surf lh Fri Jul 27 15:19:53 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -mgz -T1 brain.finalsurfs pp_assurgent lh using white.preaparc as white matter name... using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/filled.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/brain.finalsurfs.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/../mri/aseg.presurf.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/wm.mgz... 14192 bright wm thresholded. 34 bright non-wm voxels segmented. reading original surface position from /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.orig... computing class statistics... border white: 214789 voxels (1.28%) border gray 238175 voxels (1.42%) WM (95.0): 95.4 +- 8.4 [70.0 --> 110.0] GM (69.0) : 66.9 +- 13.1 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 48.9 (was 70) setting MAX_BORDER_WHITE to 107.4 (was 105) setting MIN_BORDER_WHITE to 62.0 (was 85) setting MAX_CSF to 35.8 (was 40) setting MAX_GRAY to 90.6 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 48.9 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 22.7 (was 40) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.82 +- 0.22 (0.02-->4.22) (max @ vno 88687 --> 91292) face area 0.28 +- 0.12 (0.00-->3.87) mean absolute distance = 0.90 +- 1.11 3872 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=99+-7.0, GM=62+-11.3 mean inside = 90.1, mean outside = 71.5 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... mean border=74.6, 287 (287) missing vertices, mean dist 0.4 [0.9 (%28.6)->0.9 (%71.4))] %38 local maxima, %57 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.94 +- 0.27 (0.12-->4.34) (max @ vno 88687 --> 91292) face area 0.28 +- 0.14 (0.00-->2.80) mean absolute distance = 0.45 +- 0.96 4327 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3797324.0, rms=12.179 001: dt: 0.5000, sse=2312752.5, rms=9.086 (25.400%) 002: dt: 0.5000, sse=1538431.0, rms=6.928 (23.747%) 003: dt: 0.5000, sse=1127893.9, rms=5.438 (21.511%) 004: dt: 0.5000, sse=924573.1, rms=4.488 (17.471%) 005: dt: 0.5000, sse=838520.4, rms=3.968 (11.572%) 006: dt: 0.5000, sse=781902.1, rms=3.681 (7.250%) 007: dt: 0.5000, sse=780361.2, rms=3.554 (3.432%) 008: dt: 0.5000, sse=749499.0, rms=3.481 (2.074%) rms = 3.46, time step reduction 1 of 3 to 0.250... 009: dt: 0.5000, sse=750560.5, rms=3.458 (0.640%) 010: dt: 0.2500, sse=581901.7, rms=2.065 (40.305%) 011: dt: 0.2500, sse=552197.0, rms=1.721 (16.632%) 012: dt: 0.2500, sse=560147.3, rms=1.621 (5.817%) rms = 1.58, time step reduction 2 of 3 to 0.125... 013: dt: 0.2500, sse=544308.2, rms=1.578 (2.678%) 014: dt: 0.1250, sse=537610.3, rms=1.503 (4.744%) rms = 1.49, time step reduction 3 of 3 to 0.062... 015: dt: 0.1250, sse=536045.6, rms=1.493 (0.657%) positioning took 0.9 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group removing 4 vertex label from ripped group removing 3 vertex label from ripped group mean border=76.8, 217 (89) missing vertices, mean dist -0.3 [0.6 (%61.9)->0.3 (%38.1))] %42 local maxima, %52 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=picas, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.93 +- 0.26 (0.11-->4.14) (max @ vno 88687 --> 91292) face area 0.36 +- 0.17 (0.00-->3.87) mean absolute distance = 0.40 +- 0.67 4174 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1037269.2, rms=4.316 016: dt: 0.5000, sse=831774.0, rms=2.930 (32.112%) rms = 2.97, time step reduction 1 of 3 to 0.250... 017: dt: 0.2500, sse=747423.1, rms=2.307 (21.279%) 018: dt: 0.2500, sse=707515.9, rms=1.780 (22.846%) 019: dt: 0.2500, sse=673144.4, rms=1.537 (13.614%) 020: dt: 0.2500, sse=678190.9, rms=1.428 (7.145%) 021: dt: 0.2500, sse=667664.8, rms=1.372 (3.872%) rms = 1.35, time step reduction 2 of 3 to 0.125... 022: dt: 0.2500, sse=658780.1, rms=1.346 (1.899%) rms = 1.30, time step reduction 3 of 3 to 0.062... 023: dt: 0.1250, sse=661099.7, rms=1.301 (3.345%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 3 vertex label from ripped group mean border=79.2, 182 (71) missing vertices, mean dist -0.2 [0.5 (%61.0)->0.2 (%39.0))] %55 local maxima, %39 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=picas, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.92 +- 0.25 (0.06-->4.00) (max @ vno 117114 --> 117176) face area 0.36 +- 0.17 (0.00-->3.83) mean absolute distance = 0.35 +- 0.53 3836 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=943658.2, rms=3.837 024: dt: 0.5000, sse=754794.2, rms=2.483 (35.284%) rms = 2.70, time step reduction 1 of 3 to 0.250... 025: dt: 0.2500, sse=683077.6, rms=1.818 (26.785%) 026: dt: 0.2500, sse=655996.6, rms=1.396 (23.228%) 027: dt: 0.2500, sse=646548.8, rms=1.274 (8.720%) rms = 1.25, time step reduction 2 of 3 to 0.125... 028: dt: 0.2500, sse=645447.3, rms=1.251 (1.801%) rms = 1.20, time step reduction 3 of 3 to 0.062... 029: dt: 0.1250, sse=640614.9, rms=1.202 (3.955%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 2 vertex label from ripped group mean border=80.6, 185 (63) missing vertices, mean dist -0.1 [0.4 (%56.9)->0.2 (%43.1))] %65 local maxima, %29 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=picas, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.white.preaparc... writing smoothed curvature to lh.curv 000: dt: 0.0000, sse=739287.0, rms=2.502 030: dt: 0.5000, sse=717898.1, rms=1.971 (21.201%) rms = 2.41, time step reduction 1 of 3 to 0.250... 031: dt: 0.2500, sse=640047.7, rms=1.297 (34.199%) 032: dt: 0.2500, sse=633510.9, rms=1.064 (17.952%) 033: dt: 0.2500, sse=634529.5, rms=1.001 (5.973%) rms = 1.02, time step reduction 2 of 3 to 0.125... rms = 0.98, time step reduction 3 of 3 to 0.062... 034: dt: 0.1250, sse=620338.9, rms=0.979 (2.182%) positioning took 0.4 minutes generating cortex label... 10 non-cortical segments detected only using segment with 8208 vertices erasing segment 1 (vno[0] = 66978) erasing segment 2 (vno[0] = 67967) erasing segment 3 (vno[0] = 69080) erasing segment 4 (vno[0] = 71189) erasing segment 5 (vno[0] = 71197) erasing segment 6 (vno[0] = 71695) erasing segment 7 (vno[0] = 72228) erasing segment 8 (vno[0] = 81837) erasing segment 9 (vno[0] = 90599) writing cortex label to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/label/lh.cortex.label... writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.curv writing smoothed area to lh.area writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.area vertex spacing 0.91 +- 0.26 (0.06-->4.02) (max @ vno 117114 --> 117176) face area 0.35 +- 0.17 (0.00-->4.03) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 3 vertex label from ripped group removing 2 vertex label from ripped group smoothing surface for 5 iterations... mean border=47.0, 228 (228) missing vertices, mean dist 1.8 [0.0 (%0.0)->2.2 (%100.0))] %14 local maxima, %65 large gradients and %16 min vals, 164 gradients ignored perforing initial smooth deformation to move away from white surface tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=25743216.0, rms=33.650 001: dt: 0.0500, sse=23033642.0, rms=31.792 (5.523%) 002: dt: 0.0500, sse=20900120.0, rms=30.248 (4.856%) 003: dt: 0.0500, sse=19181830.0, rms=28.944 (4.309%) 004: dt: 0.0500, sse=17759774.0, rms=27.819 (3.887%) 005: dt: 0.0500, sse=16551217.0, rms=26.826 (3.571%) 006: dt: 0.0500, sse=15497930.0, rms=25.929 (3.343%) 007: dt: 0.0500, sse=14562311.0, rms=25.106 (3.176%) 008: dt: 0.0500, sse=13719750.0, rms=24.340 (3.049%) 009: dt: 0.0500, sse=12951690.0, rms=23.621 (2.956%) 010: dt: 0.0500, sse=12247422.0, rms=22.941 (2.877%) positioning took 0.5 minutes mean border=46.7, 134 (92) missing vertices, mean dist 1.4 [0.1 (%0.3)->1.6 (%99.7))] %15 local maxima, %66 large gradients and %13 min vals, 154 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=12959257.0, rms=23.583 011: dt: 0.0500, sse=12300038.0, rms=22.947 (2.697%) 012: dt: 0.0500, sse=11690070.0, rms=22.342 (2.635%) 013: dt: 0.0500, sse=11123662.0, rms=21.765 (2.581%) 014: dt: 0.0500, sse=10599502.0, rms=21.218 (2.516%) 015: dt: 0.0500, sse=10114751.0, rms=20.698 (2.448%) 016: dt: 0.0500, sse=9666018.0, rms=20.206 (2.381%) 017: dt: 0.0500, sse=9244375.0, rms=19.731 (2.347%) 018: dt: 0.0500, sse=8850130.0, rms=19.277 (2.301%) 019: dt: 0.0500, sse=8480263.0, rms=18.841 (2.262%) 020: dt: 0.0500, sse=8131305.5, rms=18.420 (2.234%) positioning took 0.5 minutes mean border=46.5, 142 (68) missing vertices, mean dist 1.1 [0.1 (%7.5)->1.3 (%92.5))] %16 local maxima, %66 large gradients and %13 min vals, 145 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=8237418.0, rms=18.540 021: dt: 0.0500, sse=7886474.5, rms=18.110 (2.321%) 022: dt: 0.0500, sse=7560662.0, rms=17.701 (2.258%) 023: dt: 0.0500, sse=7246980.5, rms=17.298 (2.276%) 024: dt: 0.0500, sse=6956703.5, rms=16.916 (2.205%) 025: dt: 0.0500, sse=6688030.5, rms=16.556 (2.133%) 026: dt: 0.0500, sse=6437688.0, rms=16.212 (2.075%) 027: dt: 0.0500, sse=6201276.0, rms=15.881 (2.044%) 028: dt: 0.0500, sse=5973445.5, rms=15.554 (2.054%) 029: dt: 0.0500, sse=5754346.0, rms=15.234 (2.059%) 030: dt: 0.0500, sse=5544361.5, rms=14.921 (2.058%) positioning took 0.5 minutes mean border=46.5, 169 (65) missing vertices, mean dist 0.8 [0.1 (%26.1)->1.3 (%73.9))] %16 local maxima, %66 large gradients and %12 min vals, 114 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=5653700.0, rms=15.064 031: dt: 0.5000, sse=4227575.0, rms=12.765 (15.260%) 032: dt: 0.5000, sse=3284974.0, rms=10.972 (14.045%) 033: dt: 0.5000, sse=2605811.8, rms=9.485 (13.555%) 034: dt: 0.5000, sse=2174975.8, rms=8.389 (11.553%) 035: dt: 0.5000, sse=1879878.2, rms=7.560 (9.886%) 036: dt: 0.5000, sse=1702354.8, rms=6.999 (7.417%) 037: dt: 0.5000, sse=1563397.6, rms=6.542 (6.530%) 038: dt: 0.5000, sse=1482620.6, rms=6.247 (4.513%) 039: dt: 0.5000, sse=1410748.6, rms=5.988 (4.148%) 040: dt: 0.5000, sse=1375879.8, rms=5.844 (2.403%) 041: dt: 0.5000, sse=1337270.5, rms=5.700 (2.455%) 042: dt: 0.5000, sse=1325057.6, rms=5.642 (1.030%) 043: dt: 0.5000, sse=1302578.0, rms=5.558 (1.479%) rms = 5.54, time step reduction 1 of 3 to 0.250... 044: dt: 0.5000, sse=1301096.0, rms=5.542 (0.292%) 045: dt: 0.2500, sse=1141136.4, rms=4.801 (13.366%) 046: dt: 0.2500, sse=1109685.2, rms=4.644 (3.264%) rms = 4.61, time step reduction 2 of 3 to 0.125... 047: dt: 0.2500, sse=1103590.6, rms=4.612 (0.703%) 048: dt: 0.1250, sse=1088264.8, rms=4.531 (1.754%) rms = 4.52, time step reduction 3 of 3 to 0.062... 049: dt: 0.1250, sse=1086390.2, rms=4.521 (0.214%) positioning took 1.1 minutes mean border=45.5, 872 (18) missing vertices, mean dist 0.2 [0.1 (%50.8)->0.6 (%49.2))] %28 local maxima, %55 large gradients and %11 min vals, 99 gradients ignored tol=1.0e-04, sigma=1.0, host=picas, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1248912.0, rms=4.668 050: dt: 0.5000, sse=1169952.1, rms=4.278 (8.361%) rms = 4.50, time step reduction 1 of 3 to 0.250... 051: dt: 0.2500, sse=1067866.2, rms=3.674 (14.129%) 052: dt: 0.2500, sse=1024055.6, rms=3.392 (7.675%) 053: dt: 0.2500, sse=1007035.9, rms=3.277 (3.384%) 054: dt: 0.2500, sse=995858.4, rms=3.203 (2.241%) rms = 3.16, time step reduction 2 of 3 to 0.125... 055: dt: 0.2500, sse=989645.6, rms=3.162 (1.298%) 056: dt: 0.1250, sse=976625.3, rms=3.062 (3.167%) rms = 3.04, time step reduction 3 of 3 to 0.062... 057: dt: 0.1250, sse=973559.4, rms=3.041 (0.683%) positioning took 0.5 minutes mean border=44.3, 901 (13) missing vertices, mean dist 0.2 [0.1 (%55.1)->0.6 (%44.9))] %41 local maxima, %42 large gradients and %10 min vals, 75 gradients ignored tol=1.0e-04, sigma=0.5, host=picas, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1086257.1, rms=3.757 rms = 3.73, time step reduction 1 of 3 to 0.250... 058: dt: 0.5000, sse=1081044.0, rms=3.726 (0.826%) 059: dt: 0.2500, sse=990273.6, rms=3.141 (15.684%) 060: dt: 0.2500, sse=971882.6, rms=3.008 (4.234%) rms = 2.98, time step reduction 2 of 3 to 0.125... 061: dt: 0.2500, sse=968292.2, rms=2.984 (0.814%) 062: dt: 0.1250, sse=953164.8, rms=2.862 (4.093%) rms = 2.85, time step reduction 3 of 3 to 0.062... 063: dt: 0.1250, sse=950991.5, rms=2.846 (0.550%) positioning took 0.4 minutes mean border=43.0, 1641 (12) missing vertices, mean dist 0.1 [0.1 (%51.8)->0.5 (%48.2))] %50 local maxima, %34 large gradients and %10 min vals, 109 gradients ignored tol=1.0e-04, sigma=0.2, host=picas, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.pial... writing smoothed curvature to lh.curv.pial 000: dt: 0.0000, sse=1029061.4, rms=3.358 rms = 3.51, time step reduction 1 of 3 to 0.250... 064: dt: 0.2500, sse=986146.2, rms=3.048 (9.226%) 065: dt: 0.2500, sse=960640.2, rms=2.852 (6.458%) 066: dt: 0.2500, sse=951445.1, rms=2.787 (2.276%) rms = 2.74, time step reduction 2 of 3 to 0.125... 067: dt: 0.2500, sse=945352.9, rms=2.745 (1.505%) 068: dt: 0.1250, sse=939617.1, rms=2.693 (1.881%) rms = 2.68, time step reduction 3 of 3 to 0.062... 069: dt: 0.1250, sse=937729.8, rms=2.680 (0.487%) positioning took 0.4 minutes writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.curv.pial writing smoothed area to lh.area.pial writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.area.pial vertex spacing 1.01 +- 0.41 (0.08-->6.29) (max @ vno 75192 --> 74228) face area 0.41 +- 0.30 (0.00-->4.55) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 117791 vertices processed 25000 of 117791 vertices processed 50000 of 117791 vertices processed 75000 of 117791 vertices processed 100000 of 117791 vertices processed 0 of 117791 vertices processed 25000 of 117791 vertices processed 50000 of 117791 vertices processed 75000 of 117791 vertices processed 100000 of 117791 vertices processed thickness calculation complete, 97:555 truncations. 35896 vertices at 0 distance 90637 vertices at 1 distance 66049 vertices at 2 distance 21691 vertices at 3 distance 6110 vertices at 4 distance 1821 vertices at 5 distance 591 vertices at 6 distance 191 vertices at 7 distance 78 vertices at 8 distance 63 vertices at 9 distance 35 vertices at 10 distance 11 vertices at 11 distance 13 vertices at 12 distance 14 vertices at 13 distance 13 vertices at 14 distance 10 vertices at 15 distance 6 vertices at 16 distance 4 vertices at 17 distance 1 vertices at 18 distance 3 vertices at 19 distance 5 vertices at 20 distance writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.thickness positioning took 8.5 minutes Started at Fri Jul 27 15:19:53 CDT 2018 Ended at Fri Jul 27 15:28:22 CDT 2018 #@#%# recon-all-run-time-hours 0.141 recon-all -s pp_assurgent finished without error at Fri Jul 27 15:28:22 CDT 2018 Fri Jul 27 15:28:22 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -white #-------------------------------------------- #@# Make White Surf rh Fri Jul 27 15:28:23 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -mgz -T1 brain.finalsurfs pp_assurgent rh using white.preaparc as white matter name... using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/filled.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/brain.finalsurfs.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/../mri/aseg.presurf.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/wm.mgz... 14192 bright wm thresholded. 34 bright non-wm voxels segmented. reading original surface position from /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.orig... computing class statistics... border white: 214789 voxels (1.28%) border gray 238175 voxels (1.42%) WM (95.0): 95.4 +- 8.4 [70.0 --> 110.0] GM (69.0) : 66.9 +- 13.1 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 47.9 (was 70) setting MAX_BORDER_WHITE to 107.4 (was 105) setting MIN_BORDER_WHITE to 61.0 (was 85) setting MAX_CSF to 34.8 (was 40) setting MAX_GRAY to 90.6 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 47.9 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 21.7 (was 40) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.82 +- 0.22 (0.03-->5.14) (max @ vno 82616 --> 108514) face area 0.28 +- 0.12 (0.00-->3.76) mean absolute distance = 0.91 +- 1.19 3684 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=99+-7.0, GM=61+-13.9 mean inside = 89.7, mean outside = 70.3 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group mean border=75.3, 464 (464) missing vertices, mean dist 0.3 [1.0 (%32.5)->0.9 (%67.5))] %29 local maxima, %66 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.94 +- 0.27 (0.11-->5.15) (max @ vno 45531 --> 49825) face area 0.28 +- 0.14 (0.00-->4.32) mean absolute distance = 0.47 +- 1.04 4616 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3620169.5, rms=12.423 001: dt: 0.5000, sse=2230680.2, rms=9.350 (24.737%) 002: dt: 0.5000, sse=1578038.4, rms=7.471 (20.093%) 003: dt: 0.5000, sse=1226822.6, rms=6.210 (16.888%) 004: dt: 0.5000, sse=1033300.2, rms=5.408 (12.906%) 005: dt: 0.5000, sse=929693.3, rms=4.914 (9.138%) 006: dt: 0.5000, sse=882152.2, rms=4.634 (5.690%) 007: dt: 0.5000, sse=843523.0, rms=4.459 (3.786%) 008: dt: 0.5000, sse=826525.6, rms=4.357 (2.283%) 009: dt: 0.5000, sse=814678.4, rms=4.277 (1.844%) 010: dt: 0.5000, sse=804271.9, rms=4.216 (1.414%) rms = 4.17, time step reduction 1 of 3 to 0.250... 011: dt: 0.5000, sse=795696.2, rms=4.167 (1.180%) 012: dt: 0.2500, sse=621306.8, rms=2.918 (29.964%) 013: dt: 0.2500, sse=588054.4, rms=2.606 (10.699%) 014: dt: 0.2500, sse=578291.0, rms=2.507 (3.791%) 015: dt: 0.2500, sse=570956.8, rms=2.448 (2.359%) rms = 2.41, time step reduction 2 of 3 to 0.125... 016: dt: 0.2500, sse=568091.5, rms=2.410 (1.551%) 017: dt: 0.1250, sse=560508.4, rms=2.333 (3.210%) rms = 2.32, time step reduction 3 of 3 to 0.062... 018: dt: 0.1250, sse=558756.6, rms=2.318 (0.613%) positioning took 1.0 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group removing 2 vertex label from ripped group removing 3 vertex label from ripped group removing 1 vertex label from ripped group mean border=77.2, 442 (226) missing vertices, mean dist -0.3 [0.6 (%60.6)->0.3 (%39.4))] %32 local maxima, %63 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=picas, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.93 +- 0.26 (0.03-->4.99) (max @ vno 45531 --> 49825) face area 0.36 +- 0.18 (0.00-->5.92) mean absolute distance = 0.42 +- 0.74 4024 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1023255.7, rms=4.684 019: dt: 0.5000, sse=842082.9, rms=3.607 (22.989%) rms = 3.73, time step reduction 1 of 3 to 0.250... 020: dt: 0.2500, sse=765490.9, rms=3.082 (14.548%) 021: dt: 0.2500, sse=723242.8, rms=2.695 (12.569%) 022: dt: 0.2500, sse=699114.8, rms=2.507 (6.993%) 023: dt: 0.2500, sse=688068.0, rms=2.406 (4.030%) 024: dt: 0.2500, sse=689589.9, rms=2.338 (2.789%) 025: dt: 0.2500, sse=677675.6, rms=2.288 (2.156%) rms = 2.26, time step reduction 2 of 3 to 0.125... 026: dt: 0.2500, sse=673637.2, rms=2.258 (1.291%) rms = 2.21, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=668902.4, rms=2.215 (1.936%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group removing 1 vertex label from ripped group mean border=79.2, 419 (198) missing vertices, mean dist -0.2 [0.6 (%57.3)->0.2 (%42.7))] %45 local maxima, %49 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=picas, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.92 +- 0.26 (0.10-->4.83) (max @ vno 82616 --> 108514) face area 0.36 +- 0.17 (0.00-->5.74) mean absolute distance = 0.37 +- 0.59 3786 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=911199.4, rms=4.125 028: dt: 0.5000, sse=764596.5, rms=3.115 (24.490%) rms = 3.33, time step reduction 1 of 3 to 0.250... 029: dt: 0.2500, sse=702242.9, rms=2.620 (15.903%) 030: dt: 0.2500, sse=682624.3, rms=2.312 (11.740%) 031: dt: 0.2500, sse=664169.9, rms=2.204 (4.680%) rms = 2.16, time step reduction 2 of 3 to 0.125... 032: dt: 0.2500, sse=657791.6, rms=2.161 (1.955%) 033: dt: 0.1250, sse=650579.4, rms=2.108 (2.434%) rms = 2.09, time step reduction 3 of 3 to 0.062... 034: dt: 0.1250, sse=649253.5, rms=2.094 (0.690%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 1 vertex label from ripped group mean border=80.7, 418 (188) missing vertices, mean dist -0.2 [0.5 (%55.9)->0.3 (%44.1))] %56 local maxima, %38 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=picas, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.white.preaparc... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=752529.4, rms=3.131 035: dt: 0.5000, sse=693181.6, rms=2.607 (16.719%) rms = 3.02, time step reduction 1 of 3 to 0.250... 036: dt: 0.2500, sse=654846.2, rms=2.130 (18.303%) 037: dt: 0.2500, sse=635425.1, rms=1.980 (7.057%) 038: dt: 0.2500, sse=628170.2, rms=1.923 (2.843%) rms = 1.93, time step reduction 2 of 3 to 0.125... rms = 1.91, time step reduction 3 of 3 to 0.062... 039: dt: 0.1250, sse=624105.5, rms=1.911 (0.640%) positioning took 0.5 minutes generating cortex label... 10 non-cortical segments detected only using segment with 6570 vertices erasing segment 0 (vno[0] = 33874) erasing segment 2 (vno[0] = 37270) erasing segment 3 (vno[0] = 47756) erasing segment 4 (vno[0] = 53902) erasing segment 5 (vno[0] = 57172) erasing segment 6 (vno[0] = 61869) erasing segment 7 (vno[0] = 70572) erasing segment 8 (vno[0] = 76438) erasing segment 9 (vno[0] = 80136) writing cortex label to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/label/rh.cortex.label... writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.curv writing smoothed area to rh.area writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.area vertex spacing 0.91 +- 0.26 (0.03-->4.84) (max @ vno 45531 --> 49825) face area 0.35 +- 0.17 (0.00-->5.52) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group smoothing surface for 5 iterations... mean border=46.1, 332 (332) missing vertices, mean dist 1.8 [2.3 (%0.1)->2.0 (%99.9))] %13 local maxima, %69 large gradients and %12 min vals, 119 gradients ignored perforing initial smooth deformation to move away from white surface tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=25023426.0, rms=34.571 001: dt: 0.0500, sse=22357778.0, rms=32.640 (5.585%) 002: dt: 0.0500, sse=20252964.0, rms=31.031 (4.932%) 003: dt: 0.0500, sse=18559792.0, rms=29.672 (4.378%) 004: dt: 0.0500, sse=17157196.0, rms=28.498 (3.958%) 005: dt: 0.0500, sse=15962214.0, rms=27.457 (3.650%) 006: dt: 0.0500, sse=14919024.0, rms=26.516 (3.429%) 007: dt: 0.0500, sse=13991895.0, rms=25.650 (3.266%) 008: dt: 0.0500, sse=13156645.0, rms=24.844 (3.142%) 009: dt: 0.0500, sse=12395879.0, rms=24.086 (3.050%) 010: dt: 0.0500, sse=11698087.0, rms=23.370 (2.975%) positioning took 0.5 minutes mean border=45.8, 224 (151) missing vertices, mean dist 1.3 [0.5 (%0.5)->1.4 (%99.5))] %14 local maxima, %70 large gradients and %10 min vals, 93 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=12320835.0, rms=23.959 011: dt: 0.0500, sse=11667650.0, rms=23.286 (2.808%) 012: dt: 0.0500, sse=11064268.0, rms=22.647 (2.745%) 013: dt: 0.0500, sse=10505759.0, rms=22.039 (2.686%) 014: dt: 0.0500, sse=9992493.0, rms=21.465 (2.606%) 015: dt: 0.0500, sse=9521932.0, rms=20.924 (2.518%) 016: dt: 0.0500, sse=9090430.0, rms=20.416 (2.429%) 017: dt: 0.0500, sse=8685358.0, rms=19.927 (2.395%) 018: dt: 0.0500, sse=8306623.5, rms=19.459 (2.350%) 019: dt: 0.0500, sse=7952440.5, rms=19.010 (2.304%) 020: dt: 0.0500, sse=7618701.0, rms=18.578 (2.275%) positioning took 0.5 minutes mean border=45.5, 245 (130) missing vertices, mean dist 0.9 [0.1 (%10.5)->1.2 (%89.5))] %14 local maxima, %71 large gradients and %10 min vals, 78 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=7718738.0, rms=18.698 021: dt: 0.0500, sse=7377367.5, rms=18.248 (2.407%) 022: dt: 0.0500, sse=7061968.5, rms=17.822 (2.333%) 023: dt: 0.0500, sse=6756467.5, rms=17.399 (2.371%) 024: dt: 0.0500, sse=6474892.5, rms=17.001 (2.291%) 025: dt: 0.0500, sse=6214951.0, rms=16.624 (2.215%) 026: dt: 0.0500, sse=5973701.0, rms=16.267 (2.150%) 027: dt: 0.0500, sse=5745832.5, rms=15.921 (2.121%) 028: dt: 0.0500, sse=5526409.5, rms=15.582 (2.133%) 029: dt: 0.0500, sse=5314929.5, rms=15.247 (2.147%) 030: dt: 0.0500, sse=5111343.0, rms=14.918 (2.159%) positioning took 0.5 minutes mean border=45.6, 252 (113) missing vertices, mean dist 0.7 [0.1 (%31.3)->1.2 (%68.7))] %14 local maxima, %71 large gradients and %10 min vals, 73 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=5240854.5, rms=15.101 031: dt: 0.5000, sse=3849547.5, rms=12.667 (16.114%) 032: dt: 0.5000, sse=2931536.2, rms=10.749 (15.141%) 033: dt: 0.5000, sse=2283456.5, rms=9.172 (14.672%) 034: dt: 0.5000, sse=1909504.2, rms=8.105 (11.632%) 035: dt: 0.5000, sse=1669443.5, rms=7.355 (9.254%) 036: dt: 0.5000, sse=1553664.6, rms=6.947 (5.558%) 037: dt: 0.5000, sse=1458006.5, rms=6.612 (4.823%) 038: dt: 0.5000, sse=1418545.9, rms=6.450 (2.445%) 039: dt: 0.5000, sse=1366908.1, rms=6.261 (2.930%) 040: dt: 0.5000, sse=1353037.6, rms=6.194 (1.074%) 041: dt: 0.5000, sse=1319641.1, rms=6.070 (1.999%) rms = 6.05, time step reduction 1 of 3 to 0.250... 042: dt: 0.5000, sse=1319344.2, rms=6.055 (0.246%) 043: dt: 0.2500, sse=1126963.1, rms=5.183 (14.394%) 044: dt: 0.2500, sse=1087339.2, rms=4.985 (3.823%) 045: dt: 0.2500, sse=1076817.2, rms=4.930 (1.100%) rms = 4.90, time step reduction 2 of 3 to 0.125... 046: dt: 0.2500, sse=1071730.8, rms=4.903 (0.560%) 047: dt: 0.1250, sse=1051907.2, rms=4.798 (2.135%) rms = 4.79, time step reduction 3 of 3 to 0.062... 048: dt: 0.1250, sse=1049810.6, rms=4.787 (0.235%) positioning took 1.1 minutes mean border=44.8, 951 (70) missing vertices, mean dist 0.2 [0.1 (%52.0)->0.5 (%48.0))] %24 local maxima, %61 large gradients and % 9 min vals, 46 gradients ignored tol=1.0e-04, sigma=1.0, host=picas, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1180350.0, rms=4.873 049: dt: 0.5000, sse=1146251.0, rms=4.711 (3.311%) rms = 5.18, time step reduction 1 of 3 to 0.250... 050: dt: 0.2500, sse=1038909.7, rms=4.091 (13.156%) 051: dt: 0.2500, sse=1001858.9, rms=3.864 (5.572%) 052: dt: 0.2500, sse=986190.1, rms=3.764 (2.577%) 053: dt: 0.2500, sse=977839.7, rms=3.712 (1.391%) rms = 3.67, time step reduction 2 of 3 to 0.125... 054: dt: 0.2500, sse=971066.1, rms=3.671 (1.107%) 055: dt: 0.1250, sse=953509.9, rms=3.546 (3.397%) rms = 3.52, time step reduction 3 of 3 to 0.062... 056: dt: 0.1250, sse=949673.5, rms=3.520 (0.730%) positioning took 0.5 minutes mean border=43.8, 969 (45) missing vertices, mean dist 0.2 [0.1 (%58.0)->0.5 (%42.0))] %36 local maxima, %49 large gradients and % 8 min vals, 49 gradients ignored tol=1.0e-04, sigma=0.5, host=picas, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1040194.1, rms=4.073 rms = 4.18, time step reduction 1 of 3 to 0.250... 057: dt: 0.2500, sse=992652.4, rms=3.774 (7.328%) 058: dt: 0.2500, sse=963178.0, rms=3.581 (5.131%) 059: dt: 0.2500, sse=950934.0, rms=3.503 (2.178%) 060: dt: 0.2500, sse=942733.2, rms=3.450 (1.501%) rms = 3.43, time step reduction 2 of 3 to 0.125... 061: dt: 0.2500, sse=939521.7, rms=3.432 (0.536%) 062: dt: 0.1250, sse=925449.8, rms=3.326 (3.081%) rms = 3.30, time step reduction 3 of 3 to 0.062... 063: dt: 0.1250, sse=922154.8, rms=3.303 (0.682%) positioning took 0.5 minutes mean border=42.6, 1449 (39) missing vertices, mean dist 0.1 [0.1 (%51.5)->0.4 (%48.5))] %45 local maxima, %40 large gradients and % 8 min vals, 57 gradients ignored tol=1.0e-04, sigma=0.2, host=picas, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=991563.3, rms=3.742 rms = 4.06, time step reduction 1 of 3 to 0.250... 064: dt: 0.2500, sse=948096.9, rms=3.440 (8.087%) 065: dt: 0.2500, sse=927320.4, rms=3.289 (4.380%) 066: dt: 0.2500, sse=919183.6, rms=3.235 (1.648%) rms = 3.20, time step reduction 2 of 3 to 0.125... 067: dt: 0.2500, sse=913901.1, rms=3.202 (1.012%) 068: dt: 0.1250, sse=904173.6, rms=3.124 (2.453%) rms = 3.10, time step reduction 3 of 3 to 0.062... 069: dt: 0.1250, sse=900923.1, rms=3.101 (0.737%) positioning took 0.4 minutes writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.area.pial vertex spacing 1.00 +- 0.40 (0.05-->5.79) (max @ vno 70619 --> 71514) face area 0.41 +- 0.30 (0.00-->6.57) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 108714 vertices processed 25000 of 108714 vertices processed 50000 of 108714 vertices processed 75000 of 108714 vertices processed 100000 of 108714 vertices processed 0 of 108714 vertices processed 25000 of 108714 vertices processed 50000 of 108714 vertices processed 75000 of 108714 vertices processed 100000 of 108714 vertices processed thickness calculation complete, 17:262 truncations. 41502 vertices at 0 distance 87099 vertices at 1 distance 54319 vertices at 2 distance 16523 vertices at 3 distance 4389 vertices at 4 distance 1396 vertices at 5 distance 425 vertices at 6 distance 164 vertices at 7 distance 76 vertices at 8 distance 41 vertices at 9 distance 24 vertices at 10 distance 28 vertices at 11 distance 19 vertices at 12 distance 7 vertices at 13 distance 14 vertices at 14 distance 11 vertices at 15 distance 7 vertices at 16 distance 1 vertices at 17 distance 7 vertices at 18 distance 2 vertices at 19 distance 2 vertices at 20 distance writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.thickness positioning took 8.6 minutes Started at Fri Jul 27 15:28:22 CDT 2018 Ended at Fri Jul 27 15:37:01 CDT 2018 #@#%# recon-all-run-time-hours 0.144 recon-all -s pp_assurgent finished without error at Fri Jul 27 15:37:01 CDT 2018 Fri Jul 27 15:37:01 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -inflate2 #-------------------------------------------- #@# Inflation2 lh Fri Jul 27 15:37:01 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_inflate -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mris_inflate.lh.dat ../surf/lh.smoothwm ../surf/lh.inflated Reading ../surf/lh.smoothwm avg radius = 46.5 mm, total surface area = 74627 mm^2 writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc step 000: RMS=0.178 (target=0.015) step 005: RMS=0.124 (target=0.015) step 010: RMS=0.092 (target=0.015) step 015: RMS=0.076 (target=0.015) step 020: RMS=0.062 (target=0.015) step 025: RMS=0.052 (target=0.015) step 030: RMS=0.044 (target=0.015) step 035: RMS=0.039 (target=0.015) step 040: RMS=0.034 (target=0.015) step 045: RMS=0.031 (target=0.015) step 050: RMS=0.028 (target=0.015) step 055: RMS=0.027 (target=0.015) step 060: RMS=0.026 (target=0.015) inflation complete. inflation took 0.4 minutes mris_inflate utimesec 22.247972 mris_inflate stimesec 0.054050 mris_inflate ru_maxrss 152600 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 19954 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 8496 mris_inflate ru_oublock 9264 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 509 mris_inflate ru_nivcsw 402 Started at Fri Jul 27 15:37:01 CDT 2018 Ended at Fri Jul 27 15:37:24 CDT 2018 #@#%# recon-all-run-time-hours 0.006 recon-all -s pp_assurgent finished without error at Fri Jul 27 15:37:24 CDT 2018 Fri Jul 27 15:37:24 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -sphere #-------------------------------------------- #@# Sphere lh Fri Jul 27 15:37:24 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_sphere -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mris_sphere.lh.dat -seed 1234 ../surf/lh.inflated ../surf/lh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.296... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=picas, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %20.23 pass 1: epoch 2 of 3 starting distance error %20.22 unfolding complete - removing small folds... starting distance error %20.14 removing remaining folds... final distance error %20.16 MRISunfold() return, current seed 1234 -01: dt=0.0000, 72 negative triangles 248: dt=0.9900, 72 negative triangles 249: dt=0.9900, 42 negative triangles 250: dt=0.9900, 27 negative triangles 251: dt=0.9900, 23 negative triangles 252: dt=0.9900, 27 negative triangles 253: dt=0.9900, 13 negative triangles 254: dt=0.9900, 15 negative triangles 255: dt=0.9900, 17 negative triangles 256: dt=0.9900, 12 negative triangles 257: dt=0.9900, 8 negative triangles 258: dt=0.9900, 9 negative triangles 259: dt=0.9900, 4 negative triangles 260: dt=0.9900, 2 negative triangles 261: dt=0.9900, 4 negative triangles 262: dt=0.9900, 2 negative triangles writing spherical brain to ../surf/lh.sphere spherical transformation took 0.52 hours mris_sphere utimesec 1854.305583 mris_sphere stimesec 0.696935 mris_sphere ru_maxrss 209828 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 34242 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 8336 mris_sphere ru_oublock 8336 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 285 mris_sphere ru_nivcsw 16924 FSRUNTIME@ mris_sphere 0.5155 hours 1 threads Started at Fri Jul 27 15:37:24 CDT 2018 Ended at Fri Jul 27 16:08:20 CDT 2018 #@#%# recon-all-run-time-hours 0.516 recon-all -s pp_assurgent finished without error at Fri Jul 27 16:08:20 CDT 2018 Fri Jul 27 16:08:20 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -surfreg #-------------------------------------------- #@# Surf Reg lh Fri Jul 27 16:08:20 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_register -curv -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /space/nnac/alzheimer_center/pubsw/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment cwd /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts cmdline mris_register -curv -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /space/nnac/alzheimer_center/pubsw/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading surface from ../surf/lh.sphere... reading template parameterization from /space/nnac/alzheimer_center/pubsw/freesurfer/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=picas, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=picas, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc curvature mean = 0.000, std = 5.578 curvature mean = 0.048, std = 0.817 curvature mean = 0.010, std = 0.881 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (16.00, 0.00, 16.00) sse = 208017.3, tmin=0.7458 d=32.00 min @ (-8.00, 0.00, 0.00) sse = 196849.2, tmin=1.5059 d=16.00 min @ (4.00, 0.00, -4.00) sse = 163115.6, tmin=2.2044 d=8.00 min @ (0.00, 2.00, 0.00) sse = 159136.4, tmin=2.9005 d=4.00 min @ (0.00, -1.00, 1.00) sse = 155305.2, tmin=3.6648 d=1.00 min @ (0.00, 0.25, 0.00) sse = 155165.1, tmin=5.0662 tol=1.0e+00, sigma=0.5, host=picas, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 5.73 min curvature mean = 0.027, std = 0.847 curvature mean = 0.004, std = 0.956 curvature mean = 0.026, std = 0.859 curvature mean = 0.001, std = 0.983 curvature mean = 0.026, std = 0.863 curvature mean = -0.000, std = 0.994 2 Reading smoothwm curvature mean = -0.029, std = 0.287 curvature mean = 0.045, std = 0.249 curvature mean = 0.051, std = 0.374 curvature mean = 0.042, std = 0.308 curvature mean = 0.034, std = 0.552 curvature mean = 0.041, std = 0.334 curvature mean = 0.020, std = 0.682 curvature mean = 0.041, std = 0.345 curvature mean = 0.007, std = 0.779 MRISregister() return, current seed 0 -01: dt=0.0000, 84 negative triangles 105: dt=0.9900, 84 negative triangles expanding nbhd size to 1 106: dt=0.9900, 106 negative triangles 107: dt=0.9900, 76 negative triangles 108: dt=0.9900, 72 negative triangles 109: dt=0.9900, 81 negative triangles 110: dt=0.9900, 77 negative triangles 111: dt=0.9900, 68 negative triangles 112: dt=0.9900, 66 negative triangles 113: dt=0.9900, 74 negative triangles 114: dt=0.9900, 56 negative triangles 115: dt=0.9900, 56 negative triangles 116: dt=0.9900, 50 negative triangles 117: dt=0.9900, 52 negative triangles 118: dt=0.9900, 50 negative triangles 119: dt=0.9900, 46 negative triangles 120: dt=0.9900, 48 negative triangles 121: dt=0.9900, 41 negative triangles 122: dt=0.9900, 41 negative triangles 123: dt=0.9900, 36 negative triangles 124: dt=0.9900, 36 negative triangles 125: dt=0.9900, 37 negative triangles 126: dt=0.9900, 36 negative triangles 127: dt=0.9900, 36 negative triangles 128: dt=0.9900, 33 negative triangles 129: dt=0.9900, 37 negative triangles 130: dt=0.9900, 32 negative triangles 131: dt=0.9900, 32 negative triangles 132: dt=0.9900, 32 negative triangles 133: dt=0.9900, 27 negative triangles 134: dt=0.9900, 27 negative triangles 135: dt=0.9900, 26 negative triangles 136: dt=0.9900, 25 negative triangles 137: dt=0.9900, 20 negative triangles 138: dt=0.9900, 23 negative triangles 139: dt=0.9900, 17 negative triangles 140: dt=0.9900, 17 negative triangles 141: dt=0.9900, 17 negative triangles 142: dt=0.9900, 13 negative triangles 143: dt=0.9900, 14 negative triangles 144: dt=0.9900, 8 negative triangles 145: dt=0.9900, 12 negative triangles 146: dt=0.9900, 5 negative triangles 147: dt=0.9900, 8 negative triangles 148: dt=0.9900, 7 negative triangles 149: dt=0.9900, 4 negative triangles 150: dt=0.9900, 3 negative triangles 151: dt=0.9900, 2 negative triangles 152: dt=0.9900, 1 negative triangles 153: dt=0.9900, 3 negative triangles 154: dt=0.9900, 3 negative triangles 155: dt=0.9900, 1 negative triangles 156: dt=0.9900, 1 negative triangles 157: dt=0.9900, 1 negative triangles 158: dt=0.9900, 2 negative triangles writing registered surface to ../surf/lh.sphere.reg... registration took 0.42 hours mris_register utimesec 1528.290039 mris_register stimesec 0.712934 mris_register ru_maxrss 205800 mris_register ru_ixrss 0 mris_register ru_idrss 0 mris_register ru_isrss 0 mris_register ru_minflt 26097 mris_register ru_majflt 0 mris_register ru_nswap 0 mris_register ru_inblock 8336 mris_register ru_oublock 8336 mris_register ru_msgsnd 0 mris_register ru_msgrcv 0 mris_register ru_nsignals 0 mris_register ru_nvcsw 398 mris_register ru_nivcsw 11351 FSRUNTIME@ mris_register 0.4249 hours 1 threads Started at Fri Jul 27 16:08:20 CDT 2018 Ended at Fri Jul 27 16:33:50 CDT 2018 #@#%# recon-all-run-time-hours 0.425 recon-all -s pp_assurgent finished without error at Fri Jul 27 16:33:50 CDT 2018 Fri Jul 27 16:33:51 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -cortparc #----------------------------------------- #@# Cortical Parc lh Fri Jul 27 16:33:51 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 pp_assurgent lh ../surf/lh.sphere.reg /space/nnac/alzheimer_center/pubsw/freesurfer/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /space/nnac/alzheimer_center/pubsw/freesurfer/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.8 using min determinant for regularization = 0.006 0 singular and 342 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1016 labels changed using aseg relabeling using gibbs priors... 000: 2796 changed, 118454 examined... 001: 635 changed, 11812 examined... 002: 142 changed, 3668 examined... 003: 50 changed, 896 examined... 004: 15 changed, 296 examined... 005: 3 changed, 91 examined... 006: 1 changed, 15 examined... 007: 1 changed, 7 examined... 008: 0 changed, 4 examined... 162 labels changed using aseg 000: 105 total segments, 61 labels (270 vertices) changed 001: 44 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 4 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 7906 vertices marked for relabeling... 7730 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 11 seconds. Started at Fri Jul 27 16:33:51 CDT 2018 Ended at Fri Jul 27 16:34:02 CDT 2018 #@#%# recon-all-run-time-hours 0.003 recon-all -s pp_assurgent finished without error at Fri Jul 27 16:34:02 CDT 2018 Fri Jul 27 16:34:02 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -pial #-------------------------------------------- #@# Make Pial Surf lh Fri Jul 27 16:34:02 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs pp_assurgent lh using white.preaparc starting white location... using white.preaparc starting pial locations... using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/filled.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/brain.finalsurfs.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/../mri/aseg.presurf.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/wm.mgz... 14192 bright wm thresholded. 34 bright non-wm voxels segmented. reading original surface position from /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.orig... computing class statistics... border white: 214789 voxels (1.28%) border gray 238175 voxels (1.42%) WM (95.0): 95.4 +- 8.4 [70.0 --> 110.0] GM (69.0) : 66.9 +- 13.1 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 48.9 (was 70) setting MAX_BORDER_WHITE to 107.4 (was 105) setting MIN_BORDER_WHITE to 62.0 (was 85) setting MAX_CSF to 35.8 (was 40) setting MAX_GRAY to 90.6 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 48.9 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 22.7 (was 40) using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=99+-7.0, GM=62+-11.3 mean inside = 90.1, mean outside = 71.5 smoothing surface for 5 iterations... reading initial white vertex positions from white.preaparc... MRISreadAnnotationIntoArray: vertex index out of range: 117791 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117792 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117793 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117794 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117795 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117796 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117797 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117798 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117799 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117800 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117801 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117802 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117803 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117804 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117805 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117806 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117807 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117808 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117809 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117810 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117811 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117812 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117813 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117814 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117815 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117816 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117817 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117818 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117819 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117820 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117821 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117822 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117823 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117824 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117825 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117826 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117827 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117828 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117829 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117830 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117831 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117832 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117833 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117834 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117835 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117836 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117837 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117838 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117839 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117840 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117841 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117842 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117843 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117844 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117845 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117846 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117847 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117848 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117849 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117850 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117851 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 117889 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117890 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117891 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117892 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117893 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 117903 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117904 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117905 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117906 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117907 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 117917 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117918 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117919 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117920 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117921 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 117931 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117932 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117933 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117934 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 117935 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118085 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118086 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118087 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118088 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118089 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118099 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118100 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118101 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118102 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118103 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118113 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118114 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118115 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118116 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118117 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118127 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118128 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118129 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118130 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118131 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118169 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118170 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118171 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118172 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118173 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118183 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118184 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118185 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118186 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118187 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118197 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118198 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118199 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118200 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118201 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118211 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118212 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118213 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118214 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118215 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118225 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118226 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118227 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118228 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118229 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118267 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118268 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118269 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118270 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118271 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118281 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118282 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118283 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118284 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118285 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118295 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118296 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118297 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118298 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118299 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118309 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118310 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118311 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118312 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118313 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118323 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118324 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118325 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118326 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118327 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118365 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118366 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118367 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118368 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118369 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118379 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118380 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118381 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118382 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118383 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118393 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118394 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118395 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118396 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118397 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118407 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118408 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118409 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118410 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118411 i=00000000, in_array_size=117791 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 118421 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118422 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118423 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118424 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118425 i=00000000, in_array_size=117791 annot file: 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i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118431 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118432 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118433 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118434 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118435 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118436 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118437 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118438 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118439 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118440 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118441 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118442 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118443 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118444 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118445 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118446 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118447 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118448 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118449 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118450 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118451 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118452 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 118453 i=00000000, in_array_size=117791 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.91 +- 0.26 (0.06-->4.02) (max @ vno 117114 --> 117176) face area 0.35 +- 0.16 (0.00-->3.99) mean absolute distance = 0.69 +- 1.11 3458 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 0 with 25 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 4 with 132 points - only 0.00% unknown deleting segment 5 with 90 points - only 0.00% unknown deleting segment 6 with 71 points - only 0.00% unknown deleting segment 7 with 5 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 8 with 1 points - only 0.00% unknown mean border=75.0, 326 (326) missing vertices, mean dist 0.2 [1.3 (%18.0)->0.6 (%82.0))] %36 local maxima, %58 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.94 +- 0.27 (0.09-->3.92) (max @ vno 88687 --> 91292) face area 0.35 +- 0.17 (0.00-->4.07) mean absolute distance = 0.45 +- 0.98 4572 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1956409.8, rms=7.807 001: dt: 0.5000, sse=1214024.2, rms=5.152 (34.009%) 002: dt: 0.5000, sse=947240.7, rms=3.965 (23.042%) 003: dt: 0.5000, sse=887319.6, rms=3.581 (9.684%) 004: dt: 0.5000, sse=858751.2, rms=3.344 (6.633%) rms = 3.37, time step reduction 1 of 3 to 0.250... 005: dt: 0.2500, sse=716672.4, rms=2.335 (30.157%) 006: dt: 0.2500, sse=671863.7, rms=1.798 (22.992%) 007: dt: 0.2500, sse=660632.6, rms=1.629 (9.442%) 008: dt: 0.2500, sse=664529.8, rms=1.572 (3.487%) rms = 1.53, time step reduction 2 of 3 to 0.125... 009: dt: 0.2500, sse=650922.3, rms=1.533 (2.443%) 010: dt: 0.1250, sse=647763.6, rms=1.479 (3.564%) rms = 1.47, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=648277.8, rms=1.470 (0.580%) positioning took 0.8 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 25 points - only 0.00% unknown removing 3 vertex label from ripped group removing 4 vertex label from ripped group removing 2 vertex label from ripped group removing 4 vertex label from ripped group deleting segment 5 with 92 points - only 0.00% unknown deleting segment 6 with 44 points - only 0.00% unknown deleting segment 7 with 31 points - only 0.00% unknown deleting segment 9 with 6 points - only 0.00% unknown mean border=76.8, 196 (95) missing vertices, mean dist -0.2 [0.6 (%57.4)->0.2 (%42.6))] %42 local maxima, %53 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=picas, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.93 +- 0.26 (0.09-->3.99) (max @ vno 82843 --> 117599) face area 0.37 +- 0.18 (0.00-->4.09) mean absolute distance = 0.41 +- 0.69 3987 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=962633.1, rms=3.867 012: dt: 0.5000, sse=790676.4, rms=2.683 (30.601%) rms = 2.75, time step reduction 1 of 3 to 0.250... 013: dt: 0.2500, sse=725754.6, rms=2.118 (21.071%) 014: dt: 0.2500, sse=694516.9, rms=1.656 (21.798%) 015: dt: 0.2500, sse=684981.4, rms=1.458 (11.974%) 016: dt: 0.2500, sse=669234.5, rms=1.374 (5.759%) rms = 1.34, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=668342.8, rms=1.338 (2.620%) rms = 1.29, time step reduction 3 of 3 to 0.062... 018: dt: 0.1250, sse=665549.7, rms=1.289 (3.639%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 22 points - only 0.00% unknown removing 3 vertex label from ripped group removing 2 vertex label from ripped group deleting segment 3 with 101 points - only 0.00% unknown deleting segment 4 with 31 points - only 0.00% unknown deleting segment 5 with 29 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 6 with 3 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 7 with 4 points - only 0.00% unknown mean border=79.2, 196 (84) missing vertices, mean dist -0.2 [0.5 (%61.1)->0.2 (%38.9))] %55 local maxima, %39 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=picas, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.92 +- 0.26 (0.08-->4.04) (max @ vno 117604 --> 117599) face area 0.36 +- 0.17 (0.00-->4.24) mean absolute distance = 0.35 +- 0.53 3799 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=953773.5, rms=3.872 019: dt: 0.5000, sse=778152.6, rms=2.502 (35.377%) rms = 2.67, time step reduction 1 of 3 to 0.250... 020: dt: 0.2500, sse=695535.2, rms=1.845 (26.258%) 021: dt: 0.2500, sse=664321.1, rms=1.397 (24.315%) 022: dt: 0.2500, sse=652196.3, rms=1.261 (9.719%) rms = 1.23, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=650422.1, rms=1.226 (2.753%) rms = 1.18, time step reduction 3 of 3 to 0.062... 024: dt: 0.1250, sse=644446.7, rms=1.180 (3.735%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 26 points - only 0.00% unknown removing 3 vertex label from ripped group removing 4 vertex label from ripped group removing 2 vertex label from ripped group deleting segment 4 with 86 points - only 0.00% unknown deleting segment 5 with 31 points - only 0.00% unknown deleting segment 6 with 26 points - only 0.00% unknown deleting segment 7 with 5 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 8 with 4 points - only 0.00% unknown mean border=80.6, 213 (78) missing vertices, mean dist -0.1 [0.4 (%56.8)->0.2 (%43.2))] %66 local maxima, %29 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=picas, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.white... writing smoothed curvature to lh.curv 000: dt: 0.0000, sse=741453.0, rms=2.480 025: dt: 0.5000, sse=713547.2, rms=1.961 (20.934%) rms = 2.38, time step reduction 1 of 3 to 0.250... 026: dt: 0.2500, sse=643625.9, rms=1.291 (34.165%) 027: dt: 0.2500, sse=633506.8, rms=1.051 (18.554%) 028: dt: 0.2500, sse=641846.2, rms=0.992 (5.622%) rms = 1.01, time step reduction 2 of 3 to 0.125... rms = 0.97, time step reduction 3 of 3 to 0.062... 029: dt: 0.1250, sse=624245.0, rms=0.970 (2.230%) positioning took 0.5 minutes generating cortex label... 9 non-cortical segments detected only using segment with 8207 vertices erasing segment 1 (vno[0] = 66978) erasing segment 2 (vno[0] = 67967) erasing segment 3 (vno[0] = 71189) erasing segment 4 (vno[0] = 71197) erasing segment 5 (vno[0] = 72228) erasing segment 6 (vno[0] = 73364) erasing segment 7 (vno[0] = 79867) erasing segment 8 (vno[0] = 83807) writing cortex label to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/label/lh.cortex.label... writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.curv writing smoothed area to lh.area writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.area vertex spacing 0.91 +- 0.26 (0.07-->4.09) (max @ vno 117599 --> 117604) face area 0.35 +- 0.17 (0.00-->4.27) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 3 vertex label from ripped group deleting segment 3 with 3 points - only 0.00% unknown deleting segment 4 with 10 points - only 0.00% unknown smoothing surface for 5 iterations... reading initial pial vertex positions from white.preaparc... mean border=47.0, 236 (236) missing vertices, mean dist 1.8 [0.6 (%0.0)->2.2 (%100.0))] %14 local maxima, %65 large gradients and %16 min vals, 167 gradients ignored perforing initial smooth deformation to move away from white surface tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=26547404.0, rms=34.133 001: dt: 0.0500, sse=23814466.0, rms=32.286 (5.411%) 002: dt: 0.0500, sse=21790766.0, rms=30.847 (4.457%) 003: dt: 0.0500, sse=20187938.0, rms=29.658 (3.856%) 004: dt: 0.0500, sse=18852568.0, rms=28.629 (3.469%) 005: dt: 0.0500, sse=17697084.0, rms=27.708 (3.217%) 006: dt: 0.0500, sse=16670495.0, rms=26.863 (3.049%) 007: dt: 0.0500, sse=15741240.0, rms=26.074 (2.935%) 008: dt: 0.0500, sse=14889204.0, rms=25.330 (2.855%) 009: dt: 0.0500, sse=14098482.0, rms=24.619 (2.807%) 010: dt: 0.0500, sse=13361319.0, rms=23.937 (2.770%) positioning took 0.7 minutes mean border=46.9, 165 (126) missing vertices, mean dist 1.4 [0.1 (%0.0)->1.6 (%100.0))] %15 local maxima, %65 large gradients and %15 min vals, 143 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=13913628.0, rms=24.442 011: dt: 0.0500, sse=13220091.0, rms=23.797 (2.640%) 012: dt: 0.0500, sse=12568171.0, rms=23.174 (2.618%) 013: dt: 0.0500, sse=11954284.0, rms=22.571 (2.600%) 014: dt: 0.0500, sse=11376702.0, rms=21.989 (2.579%) 015: dt: 0.0500, sse=10833458.0, rms=21.427 (2.555%) 016: dt: 0.0500, sse=10324047.0, rms=20.886 (2.524%) 017: dt: 0.0500, sse=9847017.0, rms=20.367 (2.487%) 018: dt: 0.0500, sse=9401977.0, rms=19.870 (2.440%) 019: dt: 0.0500, sse=8985541.0, rms=19.393 (2.399%) 020: dt: 0.0500, sse=8596880.0, rms=18.938 (2.350%) positioning took 0.6 minutes mean border=46.6, 152 (87) missing vertices, mean dist 1.1 [0.1 (%2.0)->1.3 (%98.0))] %15 local maxima, %65 large gradients and %15 min vals, 149 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=8711063.0, rms=19.075 021: dt: 0.0500, sse=8322931.0, rms=18.612 (2.426%) 022: dt: 0.0500, sse=7961951.0, rms=18.171 (2.370%) 023: dt: 0.0500, sse=7618771.0, rms=17.741 (2.364%) 024: dt: 0.0500, sse=7302258.0, rms=17.335 (2.287%) 025: dt: 0.0500, sse=7010432.0, rms=16.953 (2.208%) 026: dt: 0.0500, sse=6740218.5, rms=16.590 (2.138%) 027: dt: 0.0500, sse=6486673.5, rms=16.243 (2.095%) 028: dt: 0.0500, sse=6243956.0, rms=15.903 (2.093%) 029: dt: 0.0500, sse=6011010.5, rms=15.570 (2.096%) 030: dt: 0.0500, sse=5788174.5, rms=15.244 (2.092%) positioning took 0.6 minutes mean border=46.6, 163 (77) missing vertices, mean dist 0.8 [0.1 (%21.2)->1.3 (%78.8))] %15 local maxima, %66 large gradients and %14 min vals, 136 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=5874100.0, rms=15.366 031: dt: 0.5000, sse=4364915.5, rms=12.974 (15.562%) 032: dt: 0.5000, sse=3367449.5, rms=11.102 (14.428%) 033: dt: 0.5000, sse=2677120.0, rms=9.608 (13.462%) 034: dt: 0.5000, sse=2220019.5, rms=8.458 (11.967%) 035: dt: 0.5000, sse=1929540.4, rms=7.648 (9.572%) 036: dt: 0.5000, sse=1734720.8, rms=7.040 (7.949%) 037: dt: 0.5000, sse=1609180.8, rms=6.630 (5.832%) 038: dt: 0.5000, sse=1515132.9, rms=6.291 (5.117%) 039: dt: 0.5000, sse=1454832.1, rms=6.077 (3.399%) 040: dt: 0.5000, sse=1411474.4, rms=5.903 (2.863%) 041: dt: 0.5000, sse=1382236.1, rms=5.797 (1.790%) 042: dt: 0.5000, sse=1360468.2, rms=5.702 (1.640%) rms = 5.66, time step reduction 1 of 3 to 0.250... 043: dt: 0.5000, sse=1347864.2, rms=5.658 (0.774%) 044: dt: 0.2500, sse=1194776.0, rms=4.953 (12.462%) 045: dt: 0.2500, sse=1156125.5, rms=4.773 (3.636%) rms = 4.75, time step reduction 2 of 3 to 0.125... 046: dt: 0.2500, sse=1153010.4, rms=4.753 (0.413%) 047: dt: 0.1250, sse=1135139.5, rms=4.663 (1.900%) rms = 4.65, time step reduction 3 of 3 to 0.062... 048: dt: 0.1250, sse=1132741.6, rms=4.651 (0.259%) positioning took 1.4 minutes mean border=45.6, 815 (20) missing vertices, mean dist 0.2 [0.1 (%51.6)->0.6 (%48.4))] %27 local maxima, %55 large gradients and %12 min vals, 97 gradients ignored tol=1.0e-04, sigma=1.0, host=picas, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1283415.0, rms=4.817 049: dt: 0.5000, sse=1194460.9, rms=4.386 (8.956%) rms = 4.61, time step reduction 1 of 3 to 0.250... 050: dt: 0.2500, sse=1093751.4, rms=3.806 (13.227%) 051: dt: 0.2500, sse=1048452.4, rms=3.524 (7.397%) 052: dt: 0.2500, sse=1029048.7, rms=3.397 (3.593%) 053: dt: 0.2500, sse=1017825.7, rms=3.325 (2.129%) rms = 3.28, time step reduction 2 of 3 to 0.125... 054: dt: 0.2500, sse=1010248.3, rms=3.276 (1.475%) 055: dt: 0.1250, sse=996315.9, rms=3.173 (3.145%) rms = 3.15, time step reduction 3 of 3 to 0.062... 056: dt: 0.1250, sse=993325.5, rms=3.152 (0.648%) positioning took 0.7 minutes mean border=44.4, 931 (15) missing vertices, mean dist 0.2 [0.1 (%54.9)->0.6 (%45.1))] %41 local maxima, %42 large gradients and %11 min vals, 98 gradients ignored tol=1.0e-04, sigma=0.5, host=picas, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1103862.0, rms=3.831 rms = 3.80, time step reduction 1 of 3 to 0.250... 057: dt: 0.5000, sse=1098883.4, rms=3.803 (0.735%) 058: dt: 0.2500, sse=1009311.2, rms=3.240 (14.792%) 059: dt: 0.2500, sse=992012.8, rms=3.120 (3.721%) rms = 3.10, time step reduction 2 of 3 to 0.125... 060: dt: 0.2500, sse=988353.8, rms=3.096 (0.766%) 061: dt: 0.1250, sse=972917.9, rms=2.976 (3.876%) rms = 2.96, time step reduction 3 of 3 to 0.062... 062: dt: 0.1250, sse=970704.4, rms=2.961 (0.494%) positioning took 0.5 minutes mean border=43.2, 1636 (9) missing vertices, mean dist 0.1 [0.1 (%51.7)->0.5 (%48.3))] %49 local maxima, %34 large gradients and %11 min vals, 106 gradients ignored tol=1.0e-04, sigma=0.2, host=picas, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.pial... writing smoothed curvature to lh.curv.pial 000: dt: 0.0000, sse=1047899.1, rms=3.448 rms = 3.59, time step reduction 1 of 3 to 0.250... 063: dt: 0.2500, sse=1005276.3, rms=3.149 (8.672%) 064: dt: 0.2500, sse=979482.7, rms=2.957 (6.085%) 065: dt: 0.2500, sse=969103.4, rms=2.885 (2.442%) rms = 2.85, time step reduction 2 of 3 to 0.125... 066: dt: 0.2500, sse=963383.6, rms=2.847 (1.305%) 067: dt: 0.1250, sse=957338.5, rms=2.795 (1.827%) rms = 2.78, time step reduction 3 of 3 to 0.062... 068: dt: 0.1250, sse=955384.5, rms=2.783 (0.429%) positioning took 0.6 minutes writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.curv.pial writing smoothed area to lh.area.pial writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.area.pial vertex spacing 1.01 +- 0.42 (0.09-->6.09) (max @ vno 75172 --> 74206) face area 0.41 +- 0.31 (0.00-->4.98) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 117791 vertices processed 25000 of 117791 vertices processed 50000 of 117791 vertices processed 75000 of 117791 vertices processed 100000 of 117791 vertices processed 0 of 117791 vertices processed 25000 of 117791 vertices processed 50000 of 117791 vertices processed 75000 of 117791 vertices processed 100000 of 117791 vertices processed thickness calculation complete, 69:505 truncations. 43816 vertices at 0 distance 99162 vertices at 1 distance 56086 vertices at 2 distance 17023 vertices at 3 distance 4964 vertices at 4 distance 1447 vertices at 5 distance 396 vertices at 6 distance 159 vertices at 7 distance 62 vertices at 8 distance 50 vertices at 9 distance 30 vertices at 10 distance 15 vertices at 11 distance 7 vertices at 12 distance 13 vertices at 13 distance 8 vertices at 14 distance 7 vertices at 15 distance 5 vertices at 16 distance 1 vertices at 17 distance 1 vertices at 18 distance 6 vertices at 19 distance 2 vertices at 20 distance writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.thickness positioning took 10.1 minutes #-------------------------------------------- #@# Surf Volume lh Fri Jul 27 16:44:08 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume pp_assurgent lh /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.volume masking with /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/label/lh.cortex.label Total face volume 177491 Total vertex volume 173735 (mask=0) #@# pp_assurgent lh 173735 vertexvol Done Started at Fri Jul 27 16:34:02 CDT 2018 Ended at Fri Jul 27 16:44:10 CDT 2018 #@#%# recon-all-run-time-hours 0.169 recon-all -s pp_assurgent finished without error at Fri Jul 27 16:44:10 CDT 2018 Fri Jul 27 16:44:11 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -surfvolume #-------------------------------------------- #@# Surf Volume lh Fri Jul 27 16:44:11 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume pp_assurgent lh /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.volume masking with /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/label/lh.cortex.label Total face volume 177491 Total vertex volume 173735 (mask=0) #@# pp_assurgent lh 173735 vertexvol Done Started at Fri Jul 27 16:44:11 CDT 2018 Ended at Fri Jul 27 16:44:13 CDT 2018 #@#%# recon-all-run-time-hours 0.001 recon-all -s pp_assurgent finished without error at Fri Jul 27 16:44:13 CDT 2018 Fri Jul 27 16:44:13 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -inflate2 #-------------------------------------------- #@# Inflation2 rh Fri Jul 27 16:44:13 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_inflate -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mris_inflate.rh.dat ../surf/rh.smoothwm ../surf/rh.inflated Reading ../surf/rh.smoothwm avg radius = 44.7 mm, total surface area = 69334 mm^2 writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc step 000: RMS=0.179 (target=0.015) step 005: RMS=0.127 (target=0.015) step 010: RMS=0.096 (target=0.015) step 015: RMS=0.079 (target=0.015) step 020: RMS=0.067 (target=0.015) step 025: RMS=0.057 (target=0.015) step 030: RMS=0.048 (target=0.015) step 035: RMS=0.041 (target=0.015) step 040: RMS=0.037 (target=0.015) step 045: RMS=0.034 (target=0.015) step 050: RMS=0.032 (target=0.015) step 055: RMS=0.030 (target=0.015) step 060: RMS=0.029 (target=0.015) inflation complete. inflation took 0.4 minutes mris_inflate utimesec 21.315402 mris_inflate stimesec 0.049968 mris_inflate ru_maxrss 141724 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 18769 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 7872 mris_inflate ru_oublock 8568 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 475 mris_inflate ru_nivcsw 1054 Started at Fri Jul 27 16:44:13 CDT 2018 Ended at Fri Jul 27 16:44:35 CDT 2018 #@#%# recon-all-run-time-hours 0.006 recon-all -s pp_assurgent finished without error at Fri Jul 27 16:44:35 CDT 2018 Fri Jul 27 16:44:35 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -sphere #-------------------------------------------- #@# Sphere rh Fri Jul 27 16:44:35 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_sphere -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.305... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=picas, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %20.83 pass 1: epoch 2 of 3 starting distance error %20.73 unfolding complete - removing small folds... starting distance error %20.49 removing remaining folds... final distance error %20.52 MRISunfold() return, current seed 1234 -01: dt=0.0000, 112 negative triangles 233: dt=0.9900, 112 negative triangles 234: dt=0.9900, 64 negative triangles 235: dt=0.9900, 71 negative triangles 236: dt=0.9900, 57 negative triangles 237: dt=0.9900, 57 negative triangles 238: dt=0.9900, 50 negative triangles 239: dt=0.9900, 49 negative triangles 240: dt=0.9900, 50 negative triangles 241: dt=0.9900, 43 negative triangles 242: dt=0.9900, 45 negative triangles 243: dt=0.9900, 40 negative triangles 244: dt=0.9900, 43 negative triangles 245: dt=0.9900, 31 negative triangles 246: dt=0.9900, 29 negative triangles 247: dt=0.9900, 18 negative triangles 248: dt=0.9900, 21 negative triangles 249: dt=0.9900, 18 negative triangles 250: dt=0.9900, 14 negative triangles 251: dt=0.9900, 8 negative triangles 252: dt=0.9900, 14 negative triangles 253: dt=0.9900, 10 negative triangles 254: dt=0.9900, 9 negative triangles 255: dt=0.9900, 4 negative triangles 256: dt=0.9900, 3 negative triangles 257: dt=0.9900, 4 negative triangles 258: dt=0.9900, 4 negative triangles 259: dt=0.9900, 1 negative triangles writing spherical brain to ../surf/rh.sphere spherical transformation took 0.47 hours mris_sphere utimesec 1697.904516 mris_sphere stimesec 0.916894 mris_sphere ru_maxrss 194704 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 31987 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 7712 mris_sphere ru_oublock 7712 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 373 mris_sphere ru_nivcsw 19876 FSRUNTIME@ mris_sphere 0.4722 hours 1 threads Started at Fri Jul 27 16:44:35 CDT 2018 Ended at Fri Jul 27 17:12:55 CDT 2018 #@#%# recon-all-run-time-hours 0.472 recon-all -s pp_assurgent finished without error at Fri Jul 27 17:12:55 CDT 2018 Fri Jul 27 17:12:56 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -surfreg #-------------------------------------------- #@# Surf Reg rh Fri Jul 27 17:12:56 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_register -curv -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /space/nnac/alzheimer_center/pubsw/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment cwd /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts cmdline mris_register -curv -rusage /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /space/nnac/alzheimer_center/pubsw/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading surface from ../surf/rh.sphere... reading template parameterization from /space/nnac/alzheimer_center/pubsw/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=picas, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=picas, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc curvature mean = -0.000, std = 5.551 curvature mean = 0.044, std = 0.803 curvature mean = 0.009, std = 0.882 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (16.00, 0.00, 16.00) sse = 244593.3, tmin=0.5314 d=32.00 min @ (-8.00, 0.00, 8.00) sse = 217075.4, tmin=1.0713 d=16.00 min @ (4.00, 0.00, -4.00) sse = 195679.4, tmin=1.6160 d=8.00 min @ (-2.00, 0.00, 2.00) sse = 193075.3, tmin=2.1670 d=4.00 min @ (1.00, 1.00, -1.00) sse = 190363.3, tmin=2.7231 d=2.00 min @ (0.00, -0.50, 0.00) sse = 190094.0, tmin=3.3129 d=1.00 min @ (-0.25, 0.00, 0.25) sse = 190085.6, tmin=3.9334 d=0.50 min @ (0.12, 0.12, -0.12) sse = 190018.5, tmin=4.5069 tol=1.0e+00, sigma=0.5, host=picas, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 4.51 min curvature mean = 0.019, std = 0.833 curvature mean = 0.003, std = 0.955 curvature mean = 0.017, std = 0.844 curvature mean = 0.001, std = 0.982 curvature mean = 0.016, std = 0.847 curvature mean = 0.000, std = 0.993 2 Reading smoothwm curvature mean = -0.027, std = 0.280 curvature mean = 0.038, std = 0.241 curvature mean = 0.042, std = 0.389 curvature mean = 0.035, std = 0.301 curvature mean = 0.027, std = 0.567 curvature mean = 0.034, std = 0.328 curvature mean = 0.014, std = 0.696 curvature mean = 0.034, std = 0.339 curvature mean = 0.004, std = 0.794 MRISregister() return, current seed 0 -01: dt=0.0000, 80 negative triangles 129: dt=0.9900, 80 negative triangles 130: dt=0.9405, 111 negative triangles expanding nbhd size to 1 131: dt=0.9900, 85 negative triangles 132: dt=0.9900, 73 negative triangles 133: dt=0.9900, 65 negative triangles 134: dt=0.9900, 70 negative triangles 135: dt=0.9900, 66 negative triangles 136: dt=0.9900, 68 negative triangles 137: dt=0.9900, 57 negative triangles 138: dt=0.9900, 59 negative triangles 139: dt=0.9900, 47 negative triangles 140: dt=0.9900, 41 negative triangles 141: dt=0.9900, 42 negative triangles 142: dt=0.9900, 35 negative triangles 143: dt=0.9900, 30 negative triangles 144: dt=0.9900, 32 negative triangles 145: dt=0.9900, 29 negative triangles 146: dt=0.9900, 22 negative triangles 147: dt=0.9900, 21 negative triangles 148: dt=0.9900, 20 negative triangles 149: dt=0.9900, 19 negative triangles 150: dt=0.9900, 20 negative triangles 151: dt=0.9900, 14 negative triangles 152: dt=0.9900, 14 negative triangles 153: dt=0.9900, 15 negative triangles 154: dt=0.9900, 14 negative triangles 155: dt=0.9900, 13 negative triangles 156: dt=0.9900, 13 negative triangles 157: dt=0.9900, 11 negative triangles 158: dt=0.9900, 11 negative triangles 159: dt=0.9900, 9 negative triangles 160: dt=0.9900, 9 negative triangles 161: dt=0.9900, 9 negative triangles 162: dt=0.9900, 8 negative triangles 163: dt=0.9900, 8 negative triangles 164: dt=0.9900, 8 negative triangles 165: dt=0.9900, 8 negative triangles 166: dt=0.9900, 6 negative triangles 167: dt=0.9900, 4 negative triangles 168: dt=0.9900, 4 negative triangles 169: dt=0.9900, 3 negative triangles 170: dt=0.9900, 3 negative triangles 171: dt=0.9900, 3 negative triangles 172: dt=0.9900, 3 negative triangles 173: dt=0.9900, 2 negative triangles 174: dt=0.9900, 3 negative triangles 175: dt=0.9900, 2 negative triangles 176: dt=0.9900, 2 negative triangles 177: dt=0.9900, 1 negative triangles 178: dt=0.9900, 1 negative triangles 179: dt=0.9900, 1 negative triangles 180: dt=0.9900, 1 negative triangles 181: dt=0.9900, 1 negative triangles 182: dt=0.9900, 1 negative triangles 183: dt=0.9900, 1 negative triangles 184: dt=0.9900, 1 negative triangles 185: dt=0.9900, 1 negative triangles 186: dt=0.9900, 1 negative triangles writing registered surface to ../surf/rh.sphere.reg... registration took 0.50 hours mris_register utimesec 1788.262714 mris_register stimesec 0.368967 mris_register ru_maxrss 193936 mris_register ru_ixrss 0 mris_register ru_idrss 0 mris_register ru_isrss 0 mris_register ru_minflt 24665 mris_register ru_majflt 0 mris_register ru_nswap 0 mris_register ru_inblock 7712 mris_register ru_oublock 7712 mris_register ru_msgsnd 0 mris_register ru_msgrcv 0 mris_register ru_nsignals 0 mris_register ru_nvcsw 487 mris_register ru_nivcsw 6251 FSRUNTIME@ mris_register 0.4969 hours 1 threads Started at Fri Jul 27 17:12:55 CDT 2018 Ended at Fri Jul 27 17:42:45 CDT 2018 #@#%# recon-all-run-time-hours 0.497 recon-all -s pp_assurgent finished without error at Fri Jul 27 17:42:45 CDT 2018 Fri Jul 27 17:42:45 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -cortparc #----------------------------------------- #@# Cortical Parc rh Fri Jul 27 17:42:45 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 pp_assurgent rh ../surf/rh.sphere.reg /space/nnac/alzheimer_center/pubsw/freesurfer/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /space/nnac/alzheimer_center/pubsw/freesurfer/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.004 0 singular and 309 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 867 labels changed using aseg relabeling using gibbs priors... 000: 2407 changed, 109561 examined... 001: 592 changed, 10341 examined... 002: 158 changed, 3264 examined... 003: 49 changed, 956 examined... 004: 18 changed, 298 examined... 005: 7 changed, 108 examined... 006: 5 changed, 35 examined... 007: 4 changed, 22 examined... 008: 2 changed, 21 examined... 009: 0 changed, 13 examined... 189 labels changed using aseg 000: 85 total segments, 39 labels (209 vertices) changed 001: 47 total segments, 1 labels (1 vertices) changed 002: 46 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 4 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 7499 vertices marked for relabeling... 7355 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 9 seconds. Started at Fri Jul 27 17:42:45 CDT 2018 Ended at Fri Jul 27 17:42:54 CDT 2018 #@#%# recon-all-run-time-hours 0.002 recon-all -s pp_assurgent finished without error at Fri Jul 27 17:42:54 CDT 2018 Fri Jul 27 17:42:55 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -pial #-------------------------------------------- #@# Make Pial Surf rh Fri Jul 27 17:42:55 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs pp_assurgent rh using white.preaparc starting white location... using white.preaparc starting pial locations... using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/filled.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/brain.finalsurfs.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/../mri/aseg.presurf.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/wm.mgz... 14192 bright wm thresholded. 34 bright non-wm voxels segmented. reading original surface position from /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.orig... computing class statistics... border white: 214789 voxels (1.28%) border gray 238175 voxels (1.42%) WM (95.0): 95.4 +- 8.4 [70.0 --> 110.0] GM (69.0) : 66.9 +- 13.1 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 47.9 (was 70) setting MAX_BORDER_WHITE to 107.4 (was 105) setting MIN_BORDER_WHITE to 61.0 (was 85) setting MAX_CSF to 34.8 (was 40) setting MAX_GRAY to 90.6 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 47.9 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 21.7 (was 40) using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=99+-7.0, GM=61+-13.9 mean inside = 89.7, mean outside = 70.3 smoothing surface for 5 iterations... reading initial white vertex positions from white.preaparc... MRISreadAnnotationIntoArray: vertex index out of range: 108714 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108715 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108716 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108717 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108718 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108719 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108720 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108721 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108722 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108723 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108724 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108725 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108726 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108727 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108728 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108729 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108730 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108731 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108732 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108733 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108734 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108735 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108736 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108737 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108738 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108739 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108740 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108741 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108742 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108743 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108744 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108745 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108746 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108747 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108748 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108749 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108750 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108751 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108752 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108753 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108754 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108755 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108756 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108757 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108758 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108759 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108760 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108761 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108762 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108763 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108764 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108765 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108766 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108767 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108768 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108769 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108770 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108771 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108772 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108773 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108774 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108775 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108776 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108777 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108778 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108779 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108780 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108781 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108782 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108783 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108784 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108785 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108786 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108787 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108788 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108789 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108790 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108791 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108792 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108793 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108794 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108795 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108796 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108797 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108798 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108799 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108800 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108801 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108802 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108840 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108841 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108842 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108843 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108844 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108854 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108855 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108856 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108857 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108858 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108868 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108869 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108870 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108871 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108872 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108882 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108883 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108884 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108885 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108886 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108924 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108925 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108926 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108927 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108928 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108938 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108939 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108940 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108941 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108942 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108952 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108953 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108954 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108955 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108956 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108966 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108967 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108968 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108969 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108970 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108980 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108981 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108982 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108983 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108984 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109036 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109037 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109038 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109039 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109040 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109050 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109051 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109052 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109053 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109054 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109064 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109065 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109066 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109067 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109068 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109078 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109079 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109080 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109081 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109082 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109120 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109121 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109122 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109123 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109124 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109134 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109135 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109136 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109137 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109138 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109148 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109149 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109150 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109151 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109152 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109162 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109163 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109164 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109165 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109166 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109176 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109177 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109178 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109179 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109180 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109232 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109233 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109234 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109235 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109236 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109246 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109247 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109248 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109249 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109250 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109260 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109261 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109262 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109263 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109264 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109274 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109275 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109276 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109277 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109278 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109316 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109317 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109318 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109319 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109320 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109330 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109331 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109332 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109333 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109334 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109344 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109345 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109346 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109347 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109348 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109358 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109359 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109360 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109361 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109362 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109372 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109373 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109374 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109375 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109376 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109414 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109415 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109416 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109417 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109418 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109428 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109429 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109430 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109431 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109432 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109442 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109443 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109444 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109445 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109446 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109456 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109457 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109458 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109459 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109460 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109470 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109471 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109472 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109473 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109474 i=00000000, in_array_size=108714 annot file: 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i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109480 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109481 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109482 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109483 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109484 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109485 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109486 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109487 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109488 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109489 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109490 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109491 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109492 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109493 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109494 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109495 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109496 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109497 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109498 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109499 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109500 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109501 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109502 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109503 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109504 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109505 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109506 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109507 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109508 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109509 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109510 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109511 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109512 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109513 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109514 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109515 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109516 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109517 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109518 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109519 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109520 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109521 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109522 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109523 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109524 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109525 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109526 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109527 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109528 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109529 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109530 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109531 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109532 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109533 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109534 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109535 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109536 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109537 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109538 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109539 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109540 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109541 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109542 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109543 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109544 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109545 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109546 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109547 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109548 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109549 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109550 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109551 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109552 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109553 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109554 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109555 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109556 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109557 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109558 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109559 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109560 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.91 +- 0.26 (0.03-->4.84) (max @ vno 45531 --> 49825) face area 0.35 +- 0.17 (0.00-->5.47) mean absolute distance = 0.69 +- 1.18 3565 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 0 with 44 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 3 with 1 points - only 0.00% unknown deleting segment 4 with 116 points - only 0.00% unknown deleting segment 5 with 12 points - only 0.00% unknown mean border=75.7, 495 (492) missing vertices, mean dist 0.2 [1.2 (%22.5)->0.5 (%77.5))] %28 local maxima, %67 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.94 +- 0.27 (0.07-->4.77) (max @ vno 42295 --> 42270) face area 0.35 +- 0.18 (0.00-->5.77) mean absolute distance = 0.46 +- 1.04 4778 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1675222.6, rms=7.419 001: dt: 0.5000, sse=1135162.5, rms=5.322 (28.260%) 002: dt: 0.5000, sse=945856.4, rms=4.411 (17.126%) 003: dt: 0.5000, sse=902573.8, rms=4.134 (6.273%) 004: dt: 0.5000, sse=851865.2, rms=3.839 (7.133%) rms = 3.85, time step reduction 1 of 3 to 0.250... 005: dt: 0.2500, sse=712040.8, rms=2.830 (26.279%) 006: dt: 0.2500, sse=659478.6, rms=2.308 (18.460%) 007: dt: 0.2500, sse=644388.9, rms=2.120 (8.134%) 008: dt: 0.2500, sse=636182.3, rms=2.045 (3.547%) rms = 2.00, time step reduction 2 of 3 to 0.125... 009: dt: 0.2500, sse=633667.6, rms=1.996 (2.399%) 010: dt: 0.1250, sse=628192.2, rms=1.928 (3.401%) rms = 1.91, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=631248.9, rms=1.909 (0.979%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 42 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 2 with 44 points - only 0.00% unknown deleting segment 3 with 5 points - only 20.00% unknown removing 2 vertex label from ripped group deleting segment 4 with 2 points - only 0.00% unknown deleting segment 5 with 6 points - only 0.00% unknown mean border=77.2, 407 (257) missing vertices, mean dist -0.3 [0.7 (%54.1)->0.2 (%45.9))] %32 local maxima, %63 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=picas, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.93 +- 0.27 (0.07-->4.81) (max @ vno 42295 --> 42270) face area 0.36 +- 0.18 (0.00-->6.23) mean absolute distance = 0.43 +- 0.74 4222 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=882768.5, rms=3.834 012: dt: 0.5000, sse=762320.0, rms=2.974 (22.435%) rms = 3.16, time step reduction 1 of 3 to 0.250... 013: dt: 0.2500, sse=701020.1, rms=2.474 (16.802%) 014: dt: 0.2500, sse=668392.3, rms=2.136 (13.666%) 015: dt: 0.2500, sse=656193.0, rms=1.983 (7.132%) 016: dt: 0.2500, sse=652218.4, rms=1.896 (4.389%) rms = 1.86, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=645905.5, rms=1.855 (2.181%) 018: dt: 0.1250, sse=639752.4, rms=1.800 (2.943%) rms = 1.78, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=638492.8, rms=1.784 (0.933%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 40 points - only 0.00% unknown deleting segment 1 with 46 points - only 0.00% unknown deleting segment 2 with 5 points - only 20.00% unknown mean border=79.2, 376 (225) missing vertices, mean dist -0.2 [0.6 (%57.3)->0.2 (%42.7))] %45 local maxima, %49 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=picas, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.92 +- 0.26 (0.07-->4.85) (max @ vno 42295 --> 42270) face area 0.36 +- 0.18 (0.00-->5.81) mean absolute distance = 0.37 +- 0.58 3872 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=890837.8, rms=3.980 020: dt: 0.5000, sse=745395.6, rms=2.866 (27.979%) rms = 3.06, time step reduction 1 of 3 to 0.250... 021: dt: 0.2500, sse=676690.6, rms=2.327 (18.824%) 022: dt: 0.2500, sse=647305.4, rms=1.963 (15.624%) 023: dt: 0.2500, sse=636593.4, rms=1.842 (6.203%) 024: dt: 0.2500, sse=635852.6, rms=1.789 (2.880%) rms = 1.78, time step reduction 2 of 3 to 0.125... 025: dt: 0.2500, sse=640749.8, rms=1.779 (0.544%) rms = 1.73, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=626369.9, rms=1.733 (2.577%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 49 points - only 0.00% unknown deleting segment 1 with 51 points - only 0.00% unknown deleting segment 2 with 5 points - only 20.00% unknown mean border=80.7, 396 (209) missing vertices, mean dist -0.2 [0.5 (%55.8)->0.3 (%44.2))] %57 local maxima, %38 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=picas, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.white... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=732913.2, rms=2.934 027: dt: 0.5000, sse=684357.9, rms=2.396 (18.341%) rms = 2.83, time step reduction 1 of 3 to 0.250... 028: dt: 0.2500, sse=626791.2, rms=1.857 (22.466%) 029: dt: 0.2500, sse=616040.9, rms=1.697 (8.637%) rms = 1.66, time step reduction 2 of 3 to 0.125... 030: dt: 0.2500, sse=610853.2, rms=1.662 (2.047%) rms = 1.62, time step reduction 3 of 3 to 0.062... 031: dt: 0.1250, sse=608153.8, rms=1.618 (2.632%) positioning took 0.3 minutes generating cortex label... 8 non-cortical segments detected only using segment with 6556 vertices erasing segment 0 (vno[0] = 21139) erasing segment 1 (vno[0] = 32966) erasing segment 3 (vno[0] = 37270) erasing segment 4 (vno[0] = 46692) erasing segment 5 (vno[0] = 76438) erasing segment 6 (vno[0] = 80136) erasing segment 7 (vno[0] = 82527) writing cortex label to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/label/rh.cortex.label... writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.curv writing smoothed area to rh.area writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.area vertex spacing 0.91 +- 0.27 (0.03-->4.92) (max @ vno 42270 --> 42295) face area 0.35 +- 0.18 (0.00-->5.89) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 0 with 50 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 4 with 2 points - only 0.00% unknown smoothing surface for 5 iterations... reading initial pial vertex positions from white.preaparc... mean border=46.1, 371 (371) missing vertices, mean dist 1.8 [2.4 (%0.1)->2.0 (%99.9))] %14 local maxima, %69 large gradients and %12 min vals, 106 gradients ignored perforing initial smooth deformation to move away from white surface tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=25967912.0, rms=35.180 001: dt: 0.0500, sse=23253742.0, rms=33.249 (5.489%) 002: dt: 0.0500, sse=21236724.0, rms=31.737 (4.545%) 003: dt: 0.0500, sse=19636810.0, rms=30.485 (3.945%) 004: dt: 0.0500, sse=18301122.0, rms=29.399 (3.563%) 005: dt: 0.0500, sse=17143860.0, rms=28.424 (3.316%) 006: dt: 0.0500, sse=16114399.0, rms=27.528 (3.153%) 007: dt: 0.0500, sse=15181588.0, rms=26.690 (3.044%) 008: dt: 0.0500, sse=14326646.0, rms=25.898 (2.967%) 009: dt: 0.0500, sse=13534660.0, rms=25.142 (2.919%) 010: dt: 0.0500, sse=12796915.0, rms=24.417 (2.885%) positioning took 0.5 minutes mean border=46.0, 255 (203) missing vertices, mean dist 1.3 [1.5 (%0.2)->1.5 (%99.8))] %14 local maxima, %69 large gradients and %12 min vals, 101 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=13289984.0, rms=24.889 011: dt: 0.0500, sse=12596705.0, rms=24.202 (2.760%) 012: dt: 0.0500, sse=11946787.0, rms=23.540 (2.736%) 013: dt: 0.0500, sse=11337371.0, rms=22.902 (2.712%) 014: dt: 0.0500, sse=10765458.0, rms=22.286 (2.689%) 015: dt: 0.0500, sse=10229624.0, rms=21.693 (2.661%) 016: dt: 0.0500, sse=9730237.0, rms=21.125 (2.617%) 017: dt: 0.0500, sse=9266435.0, rms=20.584 (2.563%) 018: dt: 0.0500, sse=8837894.0, rms=20.070 (2.494%) 019: dt: 0.0500, sse=8439825.0, rms=19.581 (2.436%) 020: dt: 0.0500, sse=8071125.5, rms=19.117 (2.370%) positioning took 0.5 minutes mean border=45.5, 235 (162) missing vertices, mean dist 1.0 [0.1 (%3.0)->1.2 (%97.0))] %14 local maxima, %70 large gradients and %11 min vals, 87 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=8210729.5, rms=19.296 021: dt: 0.0500, sse=7833771.0, rms=18.814 (2.496%) 022: dt: 0.0500, sse=7485027.0, rms=18.357 (2.428%) 023: dt: 0.0500, sse=7150786.0, rms=17.908 (2.446%) 024: dt: 0.0500, sse=6845049.5, rms=17.487 (2.350%) 025: dt: 0.0500, sse=6565620.5, rms=17.094 (2.251%) 026: dt: 0.0500, sse=6308516.0, rms=16.723 (2.168%) 027: dt: 0.0500, sse=6067066.0, rms=16.367 (2.127%) 028: dt: 0.0500, sse=5834732.5, rms=16.018 (2.137%) 029: dt: 0.0500, sse=5610729.0, rms=15.673 (2.152%) 030: dt: 0.0500, sse=5395658.5, rms=15.334 (2.159%) positioning took 0.5 minutes mean border=45.6, 255 (138) missing vertices, mean dist 0.7 [0.1 (%26.7)->1.2 (%73.3))] %14 local maxima, %70 large gradients and %11 min vals, 76 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=5522508.5, rms=15.526 031: dt: 0.5000, sse=4048549.5, rms=13.016 (16.164%) 032: dt: 0.5000, sse=3056810.8, rms=10.995 (15.526%) 033: dt: 0.5000, sse=2378825.5, rms=9.382 (14.674%) 034: dt: 0.5000, sse=1962110.0, rms=8.215 (12.433%) 035: dt: 0.5000, sse=1721667.4, rms=7.474 (9.025%) 036: dt: 0.5000, sse=1580486.6, rms=6.985 (6.547%) 037: dt: 0.5000, sse=1495735.2, rms=6.689 (4.228%) 038: dt: 0.5000, sse=1438993.5, rms=6.465 (3.348%) 039: dt: 0.5000, sse=1398105.0, rms=6.318 (2.279%) 040: dt: 0.5000, sse=1371232.5, rms=6.200 (1.867%) 041: dt: 0.5000, sse=1349117.1, rms=6.122 (1.261%) 042: dt: 0.5000, sse=1335900.0, rms=6.055 (1.089%) rms = 6.01, time step reduction 1 of 3 to 0.250... 043: dt: 0.5000, sse=1322546.1, rms=6.012 (0.714%) 044: dt: 0.2500, sse=1147102.4, rms=5.195 (13.581%) 045: dt: 0.2500, sse=1101046.9, rms=4.974 (4.255%) rms = 4.95, time step reduction 2 of 3 to 0.125... 046: dt: 0.2500, sse=1097960.1, rms=4.953 (0.421%) 047: dt: 0.1250, sse=1074062.5, rms=4.828 (2.526%) rms = 4.81, time step reduction 3 of 3 to 0.062... 048: dt: 0.1250, sse=1071476.0, rms=4.814 (0.288%) positioning took 1.1 minutes mean border=44.9, 930 (75) missing vertices, mean dist 0.2 [0.1 (%53.2)->0.5 (%46.8))] %23 local maxima, %61 large gradients and % 9 min vals, 69 gradients ignored tol=1.0e-04, sigma=1.0, host=picas, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1200589.0, rms=4.948 049: dt: 0.5000, sse=1161422.2, rms=4.762 (3.768%) rms = 5.24, time step reduction 1 of 3 to 0.250... 050: dt: 0.2500, sse=1053491.4, rms=4.146 (12.932%) 051: dt: 0.2500, sse=1014174.4, rms=3.906 (5.775%) 052: dt: 0.2500, sse=997381.5, rms=3.800 (2.717%) 053: dt: 0.2500, sse=988010.8, rms=3.743 (1.497%) rms = 3.70, time step reduction 2 of 3 to 0.125... 054: dt: 0.2500, sse=981314.4, rms=3.703 (1.089%) 055: dt: 0.1250, sse=963962.3, rms=3.581 (3.280%) rms = 3.55, time step reduction 3 of 3 to 0.062... 056: dt: 0.1250, sse=959519.8, rms=3.552 (0.819%) positioning took 0.5 minutes mean border=43.9, 995 (61) missing vertices, mean dist 0.2 [0.1 (%58.1)->0.5 (%41.9))] %36 local maxima, %49 large gradients and % 9 min vals, 50 gradients ignored tol=1.0e-04, sigma=0.5, host=picas, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1052435.2, rms=4.117 rms = 4.22, time step reduction 1 of 3 to 0.250... 057: dt: 0.2500, sse=1005609.9, rms=3.827 (7.059%) 058: dt: 0.2500, sse=975586.0, rms=3.632 (5.085%) 059: dt: 0.2500, sse=962799.9, rms=3.551 (2.229%) 060: dt: 0.2500, sse=954419.4, rms=3.498 (1.496%) rms = 3.47, time step reduction 2 of 3 to 0.125... 061: dt: 0.2500, sse=949869.2, rms=3.470 (0.793%) 062: dt: 0.1250, sse=936738.9, rms=3.373 (2.812%) rms = 3.35, time step reduction 3 of 3 to 0.062... 063: dt: 0.1250, sse=933581.1, rms=3.351 (0.639%) positioning took 0.5 minutes mean border=42.7, 1483 (53) missing vertices, mean dist 0.1 [0.1 (%51.9)->0.4 (%48.1))] %45 local maxima, %40 large gradients and % 9 min vals, 81 gradients ignored tol=1.0e-04, sigma=0.2, host=picas, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=999962.6, rms=3.767 rms = 4.08, time step reduction 1 of 3 to 0.250... 064: dt: 0.2500, sse=957064.8, rms=3.470 (7.876%) 065: dt: 0.2500, sse=936783.5, rms=3.324 (4.226%) rms = 3.28, time step reduction 2 of 3 to 0.125... 066: dt: 0.2500, sse=929935.8, rms=3.280 (1.308%) 067: dt: 0.1250, sse=919018.4, rms=3.196 (2.583%) rms = 3.17, time step reduction 3 of 3 to 0.062... 068: dt: 0.1250, sse=915709.2, rms=3.173 (0.716%) positioning took 0.3 minutes writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.area.pial vertex spacing 1.01 +- 0.40 (0.07-->5.30) (max @ vno 41229 --> 40279) face area 0.41 +- 0.30 (0.00-->5.96) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 108714 vertices processed 25000 of 108714 vertices processed 50000 of 108714 vertices processed 75000 of 108714 vertices processed 100000 of 108714 vertices processed 0 of 108714 vertices processed 25000 of 108714 vertices processed 50000 of 108714 vertices processed 75000 of 108714 vertices processed 100000 of 108714 vertices processed thickness calculation complete, 30:175 truncations. 49842 vertices at 0 distance 91036 vertices at 1 distance 46416 vertices at 2 distance 13325 vertices at 3 distance 3654 vertices at 4 distance 1102 vertices at 5 distance 384 vertices at 6 distance 151 vertices at 7 distance 79 vertices at 8 distance 42 vertices at 9 distance 19 vertices at 10 distance 8 vertices at 11 distance 11 vertices at 12 distance 8 vertices at 13 distance 20 vertices at 14 distance 15 vertices at 15 distance 16 vertices at 16 distance 16 vertices at 17 distance 12 vertices at 18 distance 10 vertices at 19 distance 2 vertices at 20 distance writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.thickness positioning took 8.1 minutes #-------------------------------------------- #@# Surf Volume rh Fri Jul 27 17:51:00 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume pp_assurgent rh /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.volume masking with /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/label/rh.cortex.label Total face volume 149180 Total vertex volume 147203 (mask=0) #@# pp_assurgent rh 147203 vertexvol Done Started at Fri Jul 27 17:42:54 CDT 2018 Ended at Fri Jul 27 17:51:02 CDT 2018 #@#%# recon-all-run-time-hours 0.136 recon-all -s pp_assurgent finished without error at Fri Jul 27 17:51:02 CDT 2018 Fri Jul 27 17:51:02 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -surfvolume #-------------------------------------------- #@# Surf Volume rh Fri Jul 27 17:51:02 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume pp_assurgent rh /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.volume masking with /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/label/rh.cortex.label Total face volume 149180 Total vertex volume 147203 (mask=0) #@# pp_assurgent rh 147203 vertexvol Done Started at Fri Jul 27 17:51:02 CDT 2018 Ended at Fri Jul 27 17:51:04 CDT 2018 #@#%# recon-all-run-time-hours 0.001 recon-all -s pp_assurgent finished without error at Fri Jul 27 17:51:04 CDT 2018 Fri Jul 27 17:51:04 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -curvHK #-------------------------------------------- #@# Curv .H and .K lh Fri Jul 27 17:51:04 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf mris_curvature -w lh.white.preaparc total integrated curvature = 22.667*4pi (284.842) --> -22 handles ICI = 151.1, FI = 1445.4, variation=22864.010 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 130 vertices thresholded to be in k1 ~ [-1.62 0.62], k2 ~ [-0.24 0.29] total integrated curvature = 0.505*4pi (6.349) --> 0 handles ICI = 1.4, FI = 7.7, variation=138.305 114 vertices thresholded to be in [-0.10 0.02] writing Gaussian curvature to ./lh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.003 97 vertices thresholded to be in [-0.53 0.23] done. writing mean curvature to ./lh.inflated.H...curvature mean = -0.017, std = 0.024 done. Started at Fri Jul 27 17:51:04 CDT 2018 Ended at Fri Jul 27 17:51:53 CDT 2018 #@#%# recon-all-run-time-hours 0.014 recon-all -s pp_assurgent finished without error at Fri Jul 27 17:51:53 CDT 2018 Fri Jul 27 17:51:53 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -curvHK #-------------------------------------------- #@# Curv .H and .K rh Fri Jul 27 17:51:53 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf mris_curvature -w rh.white.preaparc total integrated curvature = 31.521*4pi (396.105) --> -31 handles ICI = 150.8, FI = 1366.1, variation=21726.229 writing Gaussian curvature to ./rh.white.preaparc.K...done. writing mean curvature to ./rh.white.preaparc.H...done. rm -f rh.white.H ln -s rh.white.preaparc.H rh.white.H rm -f rh.white.K ln -s rh.white.preaparc.K rh.white.K mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 132 vertices thresholded to be in k1 ~ [-3.92 0.38], k2 ~ [-0.35 0.13] total integrated curvature = 0.578*4pi (7.257) --> 0 handles ICI = 1.3, FI = 9.3, variation=151.573 134 vertices thresholded to be in [-0.03 0.41] writing Gaussian curvature to ./rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.001, std = 0.009 101 vertices thresholded to be in [-1.39 0.18] done. writing mean curvature to ./rh.inflated.H...curvature mean = -0.019, std = 0.042 done. Started at Fri Jul 27 17:51:53 CDT 2018 Ended at Fri Jul 27 17:52:36 CDT 2018 #@#%# recon-all-run-time-hours 0.012 recon-all -s pp_assurgent finished without error at Fri Jul 27 17:52:36 CDT 2018 Fri Jul 27 17:52:36 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -curvstats #----------------------------------------- #@# Curvature Stats lh Fri Jul 27 17:52:37 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm pp_assurgent lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ pp_assurgent/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture...MRISreadNewCurvature: incompatible vertex number in file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/lh.curv No such file or directory ***WARNING!*** Some error has occurred while reading 'lh.curv'. This might be due a vertex incompatibility between the surface 'lh.smoothwm' and curv 'lh.curv'. You might be able to correct this by re-running 'mris_make_surfaces' on this dataset. Skipping this (and any remaining) curvature files. Any measurements / calcuations that depend on the curvature file will be skipped. ************* Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 247 ] WARN: S lookup min: -0.247703 WARN: S explicit min: 0.000000 vertex = 212 Started at Fri Jul 27 17:52:36 CDT 2018 Ended at Fri Jul 27 17:52:39 CDT 2018 #@#%# recon-all-run-time-hours 0.001 recon-all -s pp_assurgent finished without error at Fri Jul 27 17:52:39 CDT 2018 Fri Jul 27 17:52:39 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -curvstats #----------------------------------------- #@# Curvature Stats rh Fri Jul 27 17:52:39 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm pp_assurgent rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ pp_assurgent/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture...MRISreadNewCurvature: incompatible vertex number in file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.curv No such file or directory ***WARNING!*** Some error has occurred while reading 'rh.curv'. This might be due a vertex incompatibility between the surface 'rh.smoothwm' and curv 'rh.curv'. You might be able to correct this by re-running 'mris_make_surfaces' on this dataset. Skipping this (and any remaining) curvature files. Any measurements / calcuations that depend on the curvature file will be skipped. ************* Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 213 ] WARN: S lookup min: -0.287628 WARN: S explicit min: 0.000000 vertex = 568 Started at Fri Jul 27 17:52:39 CDT 2018 Ended at Fri Jul 27 17:52:42 CDT 2018 #@#%# recon-all-run-time-hours 0.001 recon-all -s pp_assurgent finished without error at Fri Jul 27 17:52:42 CDT 2018 Fri Jul 27 17:52:42 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -jacobian_white #-------------------------------------------- #@# Jacobian white lh Fri Jul 27 17:52:42 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white.preaparc... mrisReadTriangleFile(../surf/lh.sphere.reg): surface doesn't match ../surf/lh.white.preaparc No such file or directory mrisReadTriangleFile failed. No such file or directory mris_jacobian: could not read target surface ../surf/lh.sphere.reg No such file or directory Linux picasso 3.10.0-862.9.1.el7.x86_64 #1 SMP Mon Jul 16 16:29:36 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux recon-all -s pp_assurgent exited with ERRORS at Fri Jul 27 17:52:43 CDT 2018 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting Tue Jul 31 12:28:59 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -white #-------------------------------------------- #@# Make White Surf rh Tue Jul 31 12:29:00 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -mgz -T1 brain.finalsurfs pp_assurgent rh using white.preaparc as white matter name... using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/filled.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/brain.finalsurfs.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/../mri/aseg.presurf.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/wm.mgz... 14192 bright wm thresholded. 34 bright non-wm voxels segmented. reading original surface position from /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.orig... computing class statistics... border white: 214789 voxels (1.28%) border gray 238175 voxels (1.42%) WM (95.0): 95.4 +- 8.4 [70.0 --> 110.0] GM (69.0) : 66.9 +- 13.1 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 47.9 (was 70) setting MAX_BORDER_WHITE to 107.4 (was 105) setting MIN_BORDER_WHITE to 61.0 (was 85) setting MAX_CSF to 34.8 (was 40) setting MAX_GRAY to 90.6 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 47.9 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 21.7 (was 40) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.82 +- 0.22 (0.03-->5.14) (max @ vno 82616 --> 108514) face area 0.28 +- 0.12 (0.00-->3.76) mean absolute distance = 0.91 +- 1.19 3684 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=99+-7.0, GM=61+-13.9 mean inside = 89.7, mean outside = 70.3 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group mean border=75.3, 464 (464) missing vertices, mean dist 0.3 [1.0 (%32.5)->0.9 (%67.5))] %29 local maxima, %66 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.94 +- 0.27 (0.11-->5.15) (max @ vno 45531 --> 49825) face area 0.28 +- 0.14 (0.00-->4.32) mean absolute distance = 0.47 +- 1.04 4616 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3620169.5, rms=12.423 001: dt: 0.5000, sse=2230680.2, rms=9.350 (24.737%) 002: dt: 0.5000, sse=1578038.4, rms=7.471 (20.093%) 003: dt: 0.5000, sse=1226822.6, rms=6.210 (16.888%) 004: dt: 0.5000, sse=1033300.2, rms=5.408 (12.906%) 005: dt: 0.5000, sse=929693.3, rms=4.914 (9.138%) 006: dt: 0.5000, sse=882152.2, rms=4.634 (5.690%) 007: dt: 0.5000, sse=843523.0, rms=4.459 (3.786%) 008: dt: 0.5000, sse=826525.6, rms=4.357 (2.283%) 009: dt: 0.5000, sse=814678.4, rms=4.277 (1.844%) 010: dt: 0.5000, sse=804271.9, rms=4.216 (1.414%) rms = 4.17, time step reduction 1 of 3 to 0.250... 011: dt: 0.5000, sse=795696.2, rms=4.167 (1.180%) 012: dt: 0.2500, sse=621306.8, rms=2.918 (29.964%) 013: dt: 0.2500, sse=588054.4, rms=2.606 (10.699%) 014: dt: 0.2500, sse=578291.0, rms=2.507 (3.791%) 015: dt: 0.2500, sse=570956.8, rms=2.448 (2.359%) rms = 2.41, time step reduction 2 of 3 to 0.125... 016: dt: 0.2500, sse=568091.5, rms=2.410 (1.551%) 017: dt: 0.1250, sse=560508.4, rms=2.333 (3.210%) rms = 2.32, time step reduction 3 of 3 to 0.062... 018: dt: 0.1250, sse=558756.6, rms=2.318 (0.613%) positioning took 0.9 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group removing 2 vertex label from ripped group removing 3 vertex label from ripped group removing 1 vertex label from ripped group mean border=77.2, 442 (226) missing vertices, mean dist -0.3 [0.6 (%60.6)->0.3 (%39.4))] %32 local maxima, %63 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=picas, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.93 +- 0.26 (0.03-->4.99) (max @ vno 45531 --> 49825) face area 0.36 +- 0.18 (0.00-->5.92) mean absolute distance = 0.42 +- 0.74 4024 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1023255.7, rms=4.684 019: dt: 0.5000, sse=842082.9, rms=3.607 (22.989%) rms = 3.73, time step reduction 1 of 3 to 0.250... 020: dt: 0.2500, sse=765490.9, rms=3.082 (14.548%) 021: dt: 0.2500, sse=723242.8, rms=2.695 (12.569%) 022: dt: 0.2500, sse=699114.8, rms=2.507 (6.993%) 023: dt: 0.2500, sse=688068.0, rms=2.406 (4.030%) 024: dt: 0.2500, sse=689589.9, rms=2.338 (2.789%) 025: dt: 0.2500, sse=677675.6, rms=2.288 (2.156%) rms = 2.26, time step reduction 2 of 3 to 0.125... 026: dt: 0.2500, sse=673637.2, rms=2.258 (1.291%) rms = 2.21, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=668902.4, rms=2.215 (1.936%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group removing 1 vertex label from ripped group mean border=79.2, 419 (198) missing vertices, mean dist -0.2 [0.6 (%57.3)->0.2 (%42.7))] %45 local maxima, %49 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=picas, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.92 +- 0.26 (0.10-->4.83) (max @ vno 82616 --> 108514) face area 0.36 +- 0.17 (0.00-->5.74) mean absolute distance = 0.37 +- 0.59 3786 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=911199.4, rms=4.125 028: dt: 0.5000, sse=764596.5, rms=3.115 (24.490%) rms = 3.33, time step reduction 1 of 3 to 0.250... 029: dt: 0.2500, sse=702242.9, rms=2.620 (15.903%) 030: dt: 0.2500, sse=682624.3, rms=2.312 (11.740%) 031: dt: 0.2500, sse=664169.9, rms=2.204 (4.680%) rms = 2.16, time step reduction 2 of 3 to 0.125... 032: dt: 0.2500, sse=657791.6, rms=2.161 (1.955%) 033: dt: 0.1250, sse=650579.4, rms=2.108 (2.434%) rms = 2.09, time step reduction 3 of 3 to 0.062... 034: dt: 0.1250, sse=649253.5, rms=2.094 (0.690%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 1 vertex label from ripped group mean border=80.7, 418 (188) missing vertices, mean dist -0.2 [0.5 (%55.9)->0.3 (%44.1))] %56 local maxima, %38 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=picas, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.white.preaparc... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=752529.4, rms=3.131 035: dt: 0.5000, sse=693181.6, rms=2.607 (16.719%) rms = 3.02, time step reduction 1 of 3 to 0.250... 036: dt: 0.2500, sse=654846.2, rms=2.130 (18.303%) 037: dt: 0.2500, sse=635425.1, rms=1.980 (7.057%) 038: dt: 0.2500, sse=628170.2, rms=1.923 (2.843%) rms = 1.93, time step reduction 2 of 3 to 0.125... rms = 1.91, time step reduction 3 of 3 to 0.062... 039: dt: 0.1250, sse=624105.5, rms=1.911 (0.640%) positioning took 0.3 minutes generating cortex label... 10 non-cortical segments detected only using segment with 6570 vertices erasing segment 0 (vno[0] = 33874) erasing segment 2 (vno[0] = 37270) erasing segment 3 (vno[0] = 47756) erasing segment 4 (vno[0] = 53902) erasing segment 5 (vno[0] = 57172) erasing segment 6 (vno[0] = 61869) erasing segment 7 (vno[0] = 70572) erasing segment 8 (vno[0] = 76438) erasing segment 9 (vno[0] = 80136) writing cortex label to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/label/rh.cortex.label... writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.curv writing smoothed area to rh.area writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.area vertex spacing 0.91 +- 0.26 (0.03-->4.84) (max @ vno 45531 --> 49825) face area 0.35 +- 0.17 (0.00-->5.52) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group smoothing surface for 5 iterations... mean border=46.1, 332 (332) missing vertices, mean dist 1.8 [2.3 (%0.1)->2.0 (%99.9))] %13 local maxima, %69 large gradients and %12 min vals, 119 gradients ignored perforing initial smooth deformation to move away from white surface tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=25023426.0, rms=34.571 001: dt: 0.0500, sse=22357778.0, rms=32.640 (5.585%) 002: dt: 0.0500, sse=20252964.0, rms=31.031 (4.932%) 003: dt: 0.0500, sse=18559792.0, rms=29.672 (4.378%) 004: dt: 0.0500, sse=17157196.0, rms=28.498 (3.958%) 005: dt: 0.0500, sse=15962214.0, rms=27.457 (3.650%) 006: dt: 0.0500, sse=14919024.0, rms=26.516 (3.429%) 007: dt: 0.0500, sse=13991895.0, rms=25.650 (3.266%) 008: dt: 0.0500, sse=13156645.0, rms=24.844 (3.142%) 009: dt: 0.0500, sse=12395879.0, rms=24.086 (3.050%) 010: dt: 0.0500, sse=11698087.0, rms=23.370 (2.975%) positioning took 0.4 minutes mean border=45.8, 224 (151) missing vertices, mean dist 1.3 [0.5 (%0.5)->1.4 (%99.5))] %14 local maxima, %70 large gradients and %10 min vals, 93 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=12320835.0, rms=23.959 011: dt: 0.0500, sse=11667650.0, rms=23.286 (2.808%) 012: dt: 0.0500, sse=11064268.0, rms=22.647 (2.745%) 013: dt: 0.0500, sse=10505759.0, rms=22.039 (2.686%) 014: dt: 0.0500, sse=9992493.0, rms=21.465 (2.606%) 015: dt: 0.0500, sse=9521932.0, rms=20.924 (2.518%) 016: dt: 0.0500, sse=9090430.0, rms=20.416 (2.429%) 017: dt: 0.0500, sse=8685358.0, rms=19.927 (2.395%) 018: dt: 0.0500, sse=8306623.5, rms=19.459 (2.350%) 019: dt: 0.0500, sse=7952440.5, rms=19.010 (2.304%) 020: dt: 0.0500, sse=7618701.0, rms=18.578 (2.275%) positioning took 0.4 minutes mean border=45.5, 245 (130) missing vertices, mean dist 0.9 [0.1 (%10.5)->1.2 (%89.5))] %14 local maxima, %71 large gradients and %10 min vals, 78 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=7718738.0, rms=18.698 021: dt: 0.0500, sse=7377367.5, rms=18.248 (2.407%) 022: dt: 0.0500, sse=7061968.5, rms=17.822 (2.333%) 023: dt: 0.0500, sse=6756467.5, rms=17.399 (2.371%) 024: dt: 0.0500, sse=6474892.5, rms=17.001 (2.291%) 025: dt: 0.0500, sse=6214951.0, rms=16.624 (2.215%) 026: dt: 0.0500, sse=5973701.0, rms=16.267 (2.150%) 027: dt: 0.0500, sse=5745832.5, rms=15.921 (2.121%) 028: dt: 0.0500, sse=5526409.5, rms=15.582 (2.133%) 029: dt: 0.0500, sse=5314929.5, rms=15.247 (2.147%) 030: dt: 0.0500, sse=5111343.0, rms=14.918 (2.159%) positioning took 0.4 minutes mean border=45.6, 252 (113) missing vertices, mean dist 0.7 [0.1 (%31.3)->1.2 (%68.7))] %14 local maxima, %71 large gradients and %10 min vals, 73 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=5240854.5, rms=15.101 031: dt: 0.5000, sse=3849547.5, rms=12.667 (16.114%) 032: dt: 0.5000, sse=2931536.2, rms=10.749 (15.141%) 033: dt: 0.5000, sse=2283456.5, rms=9.172 (14.672%) 034: dt: 0.5000, sse=1909504.2, rms=8.105 (11.632%) 035: dt: 0.5000, sse=1669443.5, rms=7.355 (9.254%) 036: dt: 0.5000, sse=1553664.6, rms=6.947 (5.558%) 037: dt: 0.5000, sse=1458006.5, rms=6.612 (4.823%) 038: dt: 0.5000, sse=1418545.9, rms=6.450 (2.445%) 039: dt: 0.5000, sse=1366908.1, rms=6.261 (2.930%) 040: dt: 0.5000, sse=1353037.6, rms=6.194 (1.074%) 041: dt: 0.5000, sse=1319641.1, rms=6.070 (1.999%) rms = 6.05, time step reduction 1 of 3 to 0.250... 042: dt: 0.5000, sse=1319344.2, rms=6.055 (0.246%) 043: dt: 0.2500, sse=1126963.1, rms=5.183 (14.394%) 044: dt: 0.2500, sse=1087339.2, rms=4.985 (3.823%) 045: dt: 0.2500, sse=1076817.2, rms=4.930 (1.100%) rms = 4.90, time step reduction 2 of 3 to 0.125... 046: dt: 0.2500, sse=1071730.8, rms=4.903 (0.560%) 047: dt: 0.1250, sse=1051907.2, rms=4.798 (2.135%) rms = 4.79, time step reduction 3 of 3 to 0.062... 048: dt: 0.1250, sse=1049810.6, rms=4.787 (0.235%) positioning took 0.9 minutes mean border=44.8, 951 (70) missing vertices, mean dist 0.2 [0.1 (%52.0)->0.5 (%48.0))] %24 local maxima, %61 large gradients and % 9 min vals, 46 gradients ignored tol=1.0e-04, sigma=1.0, host=picas, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1180350.0, rms=4.873 049: dt: 0.5000, sse=1146251.0, rms=4.711 (3.311%) rms = 5.18, time step reduction 1 of 3 to 0.250... 050: dt: 0.2500, sse=1038909.7, rms=4.091 (13.156%) 051: dt: 0.2500, sse=1001858.9, rms=3.864 (5.572%) 052: dt: 0.2500, sse=986190.1, rms=3.764 (2.577%) 053: dt: 0.2500, sse=977839.7, rms=3.712 (1.391%) rms = 3.67, time step reduction 2 of 3 to 0.125... 054: dt: 0.2500, sse=971066.1, rms=3.671 (1.107%) 055: dt: 0.1250, sse=953509.9, rms=3.546 (3.397%) rms = 3.52, time step reduction 3 of 3 to 0.062... 056: dt: 0.1250, sse=949673.5, rms=3.520 (0.730%) positioning took 0.4 minutes mean border=43.8, 969 (45) missing vertices, mean dist 0.2 [0.1 (%58.0)->0.5 (%42.0))] %36 local maxima, %49 large gradients and % 8 min vals, 49 gradients ignored tol=1.0e-04, sigma=0.5, host=picas, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1040194.1, rms=4.073 rms = 4.18, time step reduction 1 of 3 to 0.250... 057: dt: 0.2500, sse=992652.4, rms=3.774 (7.328%) 058: dt: 0.2500, sse=963178.0, rms=3.581 (5.131%) 059: dt: 0.2500, sse=950934.0, rms=3.503 (2.178%) 060: dt: 0.2500, sse=942733.2, rms=3.450 (1.501%) rms = 3.43, time step reduction 2 of 3 to 0.125... 061: dt: 0.2500, sse=939521.7, rms=3.432 (0.536%) 062: dt: 0.1250, sse=925449.8, rms=3.326 (3.081%) rms = 3.30, time step reduction 3 of 3 to 0.062... 063: dt: 0.1250, sse=922154.8, rms=3.303 (0.682%) positioning took 0.4 minutes mean border=42.6, 1449 (39) missing vertices, mean dist 0.1 [0.1 (%51.5)->0.4 (%48.5))] %45 local maxima, %40 large gradients and % 8 min vals, 57 gradients ignored tol=1.0e-04, sigma=0.2, host=picas, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=991563.3, rms=3.742 rms = 4.06, time step reduction 1 of 3 to 0.250... 064: dt: 0.2500, sse=948096.9, rms=3.440 (8.087%) 065: dt: 0.2500, sse=927320.4, rms=3.289 (4.380%) 066: dt: 0.2500, sse=919183.6, rms=3.235 (1.648%) rms = 3.20, time step reduction 2 of 3 to 0.125... 067: dt: 0.2500, sse=913901.1, rms=3.202 (1.012%) 068: dt: 0.1250, sse=904173.6, rms=3.124 (2.453%) rms = 3.10, time step reduction 3 of 3 to 0.062... 069: dt: 0.1250, sse=900923.1, rms=3.101 (0.737%) positioning took 0.3 minutes writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.area.pial vertex spacing 1.00 +- 0.40 (0.05-->5.79) (max @ vno 70619 --> 71514) face area 0.41 +- 0.30 (0.00-->6.57) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 108714 vertices processed 25000 of 108714 vertices processed 50000 of 108714 vertices processed 75000 of 108714 vertices processed 100000 of 108714 vertices processed 0 of 108714 vertices processed 25000 of 108714 vertices processed 50000 of 108714 vertices processed 75000 of 108714 vertices processed 100000 of 108714 vertices processed thickness calculation complete, 17:262 truncations. 41502 vertices at 0 distance 87099 vertices at 1 distance 54319 vertices at 2 distance 16523 vertices at 3 distance 4389 vertices at 4 distance 1396 vertices at 5 distance 425 vertices at 6 distance 164 vertices at 7 distance 76 vertices at 8 distance 41 vertices at 9 distance 24 vertices at 10 distance 28 vertices at 11 distance 19 vertices at 12 distance 7 vertices at 13 distance 14 vertices at 14 distance 11 vertices at 15 distance 7 vertices at 16 distance 1 vertices at 17 distance 7 vertices at 18 distance 2 vertices at 19 distance 2 vertices at 20 distance writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.thickness positioning took 7.2 minutes Started at Tue Jul 31 12:28:59 CDT 2018 Ended at Tue Jul 31 12:36:12 CDT 2018 #@#%# recon-all-run-time-hours 0.120 recon-all -s pp_assurgent finished without error at Tue Jul 31 12:36:12 CDT 2018 Tue Jul 31 12:36:12 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -pial #-------------------------------------------- #@# Make Pial Surf rh Tue Jul 31 12:36:12 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs pp_assurgent rh using white.preaparc starting white location... using white.preaparc starting pial locations... using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/filled.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/brain.finalsurfs.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/../mri/aseg.presurf.mgz... reading volume /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/mri/wm.mgz... 14192 bright wm thresholded. 34 bright non-wm voxels segmented. reading original surface position from /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.orig... computing class statistics... border white: 214789 voxels (1.28%) border gray 238175 voxels (1.42%) WM (95.0): 95.4 +- 8.4 [70.0 --> 110.0] GM (69.0) : 66.9 +- 13.1 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 47.9 (was 70) setting MAX_BORDER_WHITE to 107.4 (was 105) setting MIN_BORDER_WHITE to 61.0 (was 85) setting MAX_CSF to 34.8 (was 40) setting MAX_GRAY to 90.6 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 47.9 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 21.7 (was 40) using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=99+-7.0, GM=61+-13.9 mean inside = 89.7, mean outside = 70.3 smoothing surface for 5 iterations... reading initial white vertex positions from white.preaparc... MRISreadAnnotationIntoArray: vertex index out of range: 108714 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108715 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108716 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108717 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108718 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108719 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108720 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108721 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108722 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108723 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108724 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108725 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108726 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108727 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108728 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108729 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108730 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108731 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108732 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108733 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108734 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108735 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108736 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108737 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108738 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108739 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108740 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108741 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108742 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108743 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108744 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108745 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108746 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108747 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108748 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108749 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108750 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108751 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108752 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108753 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108754 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108755 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108756 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108757 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108758 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108759 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108760 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108761 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108762 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108763 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108764 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108765 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MRISreadAnnotationIntoArray: vertex index out of range: 108812 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108813 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108814 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108815 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108816 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108826 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108827 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108828 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108829 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108830 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108840 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108841 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108842 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108843 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108844 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108896 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108897 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108898 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108899 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108900 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108910 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108911 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108912 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108913 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108914 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108924 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108925 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108926 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108927 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108928 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108938 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108939 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108940 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108941 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108942 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 108994 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108995 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108996 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108997 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 108998 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109008 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109009 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109010 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109011 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109012 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109022 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109023 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109024 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109025 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109026 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109036 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109037 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109038 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109039 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109040 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109092 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109093 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109094 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109095 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109096 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109106 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109107 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109108 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109109 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109110 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109120 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109121 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109122 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109123 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109124 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109134 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109135 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109136 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109137 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109138 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109204 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109205 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109206 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109207 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109208 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109218 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109219 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109220 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109221 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109222 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109232 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109233 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109234 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109235 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109236 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109302 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109303 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109304 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109305 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109306 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109316 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109317 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109318 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109319 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109320 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109330 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109331 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109332 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109333 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109334 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109400 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109401 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109402 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109403 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109404 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109414 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109415 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109416 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109417 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109418 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109428 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109429 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109430 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109431 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109432 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109498 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109499 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109500 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109501 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109502 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109526 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109527 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109528 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109529 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109530 i=00000000, in_array_size=108714 annot file: 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MRISreadAnnotationIntoArray: vertex index out of range: 109540 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109541 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109542 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109543 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109544 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109545 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109546 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109547 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109548 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109549 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109550 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109551 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109552 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109553 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109554 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109555 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109556 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109557 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109558 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109559 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot MRISreadAnnotationIntoArray: vertex index out of range: 109560 i=00000000, in_array_size=108714 annot file: /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/../label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.91 +- 0.26 (0.03-->4.84) (max @ vno 45531 --> 49825) face area 0.35 +- 0.17 (0.00-->5.47) mean absolute distance = 0.69 +- 1.18 3565 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 0 with 44 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 3 with 1 points - only 0.00% unknown deleting segment 4 with 116 points - only 0.00% unknown deleting segment 5 with 12 points - only 0.00% unknown mean border=75.7, 495 (492) missing vertices, mean dist 0.2 [1.2 (%22.5)->0.5 (%77.5))] %28 local maxima, %67 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.94 +- 0.27 (0.07-->4.77) (max @ vno 42295 --> 42270) face area 0.35 +- 0.18 (0.00-->5.77) mean absolute distance = 0.46 +- 1.04 4778 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1675222.6, rms=7.419 001: dt: 0.5000, sse=1135162.5, rms=5.322 (28.260%) 002: dt: 0.5000, sse=945856.4, rms=4.411 (17.126%) 003: dt: 0.5000, sse=902573.8, rms=4.134 (6.273%) 004: dt: 0.5000, sse=851865.2, rms=3.839 (7.133%) rms = 3.85, time step reduction 1 of 3 to 0.250... 005: dt: 0.2500, sse=712040.8, rms=2.830 (26.279%) 006: dt: 0.2500, sse=659478.6, rms=2.308 (18.460%) 007: dt: 0.2500, sse=644388.9, rms=2.120 (8.134%) 008: dt: 0.2500, sse=636182.3, rms=2.045 (3.547%) rms = 2.00, time step reduction 2 of 3 to 0.125... 009: dt: 0.2500, sse=633667.6, rms=1.996 (2.399%) 010: dt: 0.1250, sse=628192.2, rms=1.928 (3.401%) rms = 1.91, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=631248.9, rms=1.909 (0.979%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 42 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 2 with 44 points - only 0.00% unknown deleting segment 3 with 5 points - only 20.00% unknown removing 2 vertex label from ripped group deleting segment 4 with 2 points - only 0.00% unknown deleting segment 5 with 6 points - only 0.00% unknown mean border=77.2, 407 (257) missing vertices, mean dist -0.3 [0.7 (%54.1)->0.2 (%45.9))] %32 local maxima, %63 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=picas, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.93 +- 0.27 (0.07-->4.81) (max @ vno 42295 --> 42270) face area 0.36 +- 0.18 (0.00-->6.23) mean absolute distance = 0.43 +- 0.74 4222 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=882768.5, rms=3.834 012: dt: 0.5000, sse=762320.0, rms=2.974 (22.435%) rms = 3.16, time step reduction 1 of 3 to 0.250... 013: dt: 0.2500, sse=701020.1, rms=2.474 (16.802%) 014: dt: 0.2500, sse=668392.3, rms=2.136 (13.666%) 015: dt: 0.2500, sse=656193.0, rms=1.983 (7.132%) 016: dt: 0.2500, sse=652218.4, rms=1.896 (4.389%) rms = 1.86, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=645905.5, rms=1.855 (2.181%) 018: dt: 0.1250, sse=639752.4, rms=1.800 (2.943%) rms = 1.78, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=638492.8, rms=1.784 (0.933%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 40 points - only 0.00% unknown deleting segment 1 with 46 points - only 0.00% unknown deleting segment 2 with 5 points - only 20.00% unknown mean border=79.2, 376 (225) missing vertices, mean dist -0.2 [0.6 (%57.3)->0.2 (%42.7))] %45 local maxima, %49 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=picas, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.92 +- 0.26 (0.07-->4.85) (max @ vno 42295 --> 42270) face area 0.36 +- 0.18 (0.00-->5.81) mean absolute distance = 0.37 +- 0.58 3872 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=890837.8, rms=3.980 020: dt: 0.5000, sse=745395.6, rms=2.866 (27.979%) rms = 3.06, time step reduction 1 of 3 to 0.250... 021: dt: 0.2500, sse=676690.6, rms=2.327 (18.824%) 022: dt: 0.2500, sse=647305.4, rms=1.963 (15.624%) 023: dt: 0.2500, sse=636593.4, rms=1.842 (6.203%) 024: dt: 0.2500, sse=635852.6, rms=1.789 (2.880%) rms = 1.78, time step reduction 2 of 3 to 0.125... 025: dt: 0.2500, sse=640749.8, rms=1.779 (0.544%) rms = 1.73, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=626369.9, rms=1.733 (2.577%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 49 points - only 0.00% unknown deleting segment 1 with 51 points - only 0.00% unknown deleting segment 2 with 5 points - only 20.00% unknown mean border=80.7, 396 (209) missing vertices, mean dist -0.2 [0.5 (%55.8)->0.3 (%44.2))] %57 local maxima, %38 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=picas, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.white... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=732913.2, rms=2.934 027: dt: 0.5000, sse=684357.9, rms=2.396 (18.341%) rms = 2.83, time step reduction 1 of 3 to 0.250... 028: dt: 0.2500, sse=626791.2, rms=1.857 (22.466%) 029: dt: 0.2500, sse=616040.9, rms=1.697 (8.637%) rms = 1.66, time step reduction 2 of 3 to 0.125... 030: dt: 0.2500, sse=610853.2, rms=1.662 (2.047%) rms = 1.62, time step reduction 3 of 3 to 0.062... 031: dt: 0.1250, sse=608153.8, rms=1.618 (2.632%) positioning took 0.3 minutes generating cortex label... 8 non-cortical segments detected only using segment with 6556 vertices erasing segment 0 (vno[0] = 21139) erasing segment 1 (vno[0] = 32966) erasing segment 3 (vno[0] = 37270) erasing segment 4 (vno[0] = 46692) erasing segment 5 (vno[0] = 76438) erasing segment 6 (vno[0] = 80136) erasing segment 7 (vno[0] = 82527) writing cortex label to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/label/rh.cortex.label... writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.curv writing smoothed area to rh.area writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.area vertex spacing 0.91 +- 0.27 (0.03-->4.92) (max @ vno 42270 --> 42295) face area 0.35 +- 0.18 (0.00-->5.89) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 0 with 50 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 4 with 2 points - only 0.00% unknown smoothing surface for 5 iterations... reading initial pial vertex positions from white.preaparc... mean border=46.1, 371 (371) missing vertices, mean dist 1.8 [2.4 (%0.1)->2.0 (%99.9))] %14 local maxima, %69 large gradients and %12 min vals, 106 gradients ignored perforing initial smooth deformation to move away from white surface tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=25967912.0, rms=35.180 001: dt: 0.0500, sse=23253742.0, rms=33.249 (5.489%) 002: dt: 0.0500, sse=21236724.0, rms=31.737 (4.545%) 003: dt: 0.0500, sse=19636810.0, rms=30.485 (3.945%) 004: dt: 0.0500, sse=18301122.0, rms=29.399 (3.563%) 005: dt: 0.0500, sse=17143860.0, rms=28.424 (3.316%) 006: dt: 0.0500, sse=16114399.0, rms=27.528 (3.153%) 007: dt: 0.0500, sse=15181588.0, rms=26.690 (3.044%) 008: dt: 0.0500, sse=14326646.0, rms=25.898 (2.967%) 009: dt: 0.0500, sse=13534660.0, rms=25.142 (2.919%) 010: dt: 0.0500, sse=12796915.0, rms=24.417 (2.885%) positioning took 0.4 minutes mean border=46.0, 255 (203) missing vertices, mean dist 1.3 [1.5 (%0.2)->1.5 (%99.8))] %14 local maxima, %69 large gradients and %12 min vals, 101 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=13289984.0, rms=24.889 011: dt: 0.0500, sse=12596705.0, rms=24.202 (2.760%) 012: dt: 0.0500, sse=11946787.0, rms=23.540 (2.736%) 013: dt: 0.0500, sse=11337371.0, rms=22.902 (2.712%) 014: dt: 0.0500, sse=10765458.0, rms=22.286 (2.689%) 015: dt: 0.0500, sse=10229624.0, rms=21.693 (2.661%) 016: dt: 0.0500, sse=9730237.0, rms=21.125 (2.617%) 017: dt: 0.0500, sse=9266435.0, rms=20.584 (2.563%) 018: dt: 0.0500, sse=8837894.0, rms=20.070 (2.494%) 019: dt: 0.0500, sse=8439825.0, rms=19.581 (2.436%) 020: dt: 0.0500, sse=8071125.5, rms=19.117 (2.370%) positioning took 0.4 minutes mean border=45.5, 235 (162) missing vertices, mean dist 1.0 [0.1 (%3.0)->1.2 (%97.0))] %14 local maxima, %70 large gradients and %11 min vals, 87 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=8210729.5, rms=19.296 021: dt: 0.0500, sse=7833771.0, rms=18.814 (2.496%) 022: dt: 0.0500, sse=7485027.0, rms=18.357 (2.428%) 023: dt: 0.0500, sse=7150786.0, rms=17.908 (2.446%) 024: dt: 0.0500, sse=6845049.5, rms=17.487 (2.350%) 025: dt: 0.0500, sse=6565620.5, rms=17.094 (2.251%) 026: dt: 0.0500, sse=6308516.0, rms=16.723 (2.168%) 027: dt: 0.0500, sse=6067066.0, rms=16.367 (2.127%) 028: dt: 0.0500, sse=5834732.5, rms=16.018 (2.137%) 029: dt: 0.0500, sse=5610729.0, rms=15.673 (2.152%) 030: dt: 0.0500, sse=5395658.5, rms=15.334 (2.159%) positioning took 0.5 minutes mean border=45.6, 255 (138) missing vertices, mean dist 0.7 [0.1 (%26.7)->1.2 (%73.3))] %14 local maxima, %70 large gradients and %11 min vals, 76 gradients ignored tol=1.0e-04, sigma=2.0, host=picas, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=5522508.5, rms=15.526 031: dt: 0.5000, sse=4048549.5, rms=13.016 (16.164%) 032: dt: 0.5000, sse=3056810.8, rms=10.995 (15.526%) 033: dt: 0.5000, sse=2378825.5, rms=9.382 (14.674%) 034: dt: 0.5000, sse=1962110.0, rms=8.215 (12.433%) 035: dt: 0.5000, sse=1721667.4, rms=7.474 (9.025%) 036: dt: 0.5000, sse=1580486.6, rms=6.985 (6.547%) 037: dt: 0.5000, sse=1495735.2, rms=6.689 (4.228%) 038: dt: 0.5000, sse=1438993.5, rms=6.465 (3.348%) 039: dt: 0.5000, sse=1398105.0, rms=6.318 (2.279%) 040: dt: 0.5000, sse=1371232.5, rms=6.200 (1.867%) 041: dt: 0.5000, sse=1349117.1, rms=6.122 (1.261%) 042: dt: 0.5000, sse=1335900.0, rms=6.055 (1.089%) rms = 6.01, time step reduction 1 of 3 to 0.250... 043: dt: 0.5000, sse=1322546.1, rms=6.012 (0.714%) 044: dt: 0.2500, sse=1147102.4, rms=5.195 (13.581%) 045: dt: 0.2500, sse=1101046.9, rms=4.974 (4.255%) rms = 4.95, time step reduction 2 of 3 to 0.125... 046: dt: 0.2500, sse=1097960.1, rms=4.953 (0.421%) 047: dt: 0.1250, sse=1074062.5, rms=4.828 (2.526%) rms = 4.81, time step reduction 3 of 3 to 0.062... 048: dt: 0.1250, sse=1071476.0, rms=4.814 (0.288%) positioning took 1.0 minutes mean border=44.9, 930 (75) missing vertices, mean dist 0.2 [0.1 (%53.2)->0.5 (%46.8))] %23 local maxima, %61 large gradients and % 9 min vals, 69 gradients ignored tol=1.0e-04, sigma=1.0, host=picas, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1200589.0, rms=4.948 049: dt: 0.5000, sse=1161422.2, rms=4.762 (3.768%) rms = 5.24, time step reduction 1 of 3 to 0.250... 050: dt: 0.2500, sse=1053491.4, rms=4.146 (12.932%) 051: dt: 0.2500, sse=1014174.4, rms=3.906 (5.775%) 052: dt: 0.2500, sse=997381.5, rms=3.800 (2.717%) 053: dt: 0.2500, sse=988010.8, rms=3.743 (1.497%) rms = 3.70, time step reduction 2 of 3 to 0.125... 054: dt: 0.2500, sse=981314.4, rms=3.703 (1.089%) 055: dt: 0.1250, sse=963962.3, rms=3.581 (3.280%) rms = 3.55, time step reduction 3 of 3 to 0.062... 056: dt: 0.1250, sse=959519.8, rms=3.552 (0.819%) positioning took 0.5 minutes mean border=43.9, 995 (61) missing vertices, mean dist 0.2 [0.1 (%58.1)->0.5 (%41.9))] %36 local maxima, %49 large gradients and % 9 min vals, 50 gradients ignored tol=1.0e-04, sigma=0.5, host=picas, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1052435.2, rms=4.117 rms = 4.22, time step reduction 1 of 3 to 0.250... 057: dt: 0.2500, sse=1005609.9, rms=3.827 (7.059%) 058: dt: 0.2500, sse=975586.0, rms=3.632 (5.085%) 059: dt: 0.2500, sse=962799.9, rms=3.551 (2.229%) 060: dt: 0.2500, sse=954419.4, rms=3.498 (1.496%) rms = 3.47, time step reduction 2 of 3 to 0.125... 061: dt: 0.2500, sse=949869.2, rms=3.470 (0.793%) 062: dt: 0.1250, sse=936738.9, rms=3.373 (2.812%) rms = 3.35, time step reduction 3 of 3 to 0.062... 063: dt: 0.1250, sse=933581.1, rms=3.351 (0.639%) positioning took 0.4 minutes mean border=42.7, 1483 (53) missing vertices, mean dist 0.1 [0.1 (%51.9)->0.4 (%48.1))] %45 local maxima, %40 large gradients and % 9 min vals, 81 gradients ignored tol=1.0e-04, sigma=0.2, host=picas, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=999962.6, rms=3.767 rms = 4.08, time step reduction 1 of 3 to 0.250... 064: dt: 0.2500, sse=957064.8, rms=3.470 (7.876%) 065: dt: 0.2500, sse=936783.5, rms=3.324 (4.226%) rms = 3.28, time step reduction 2 of 3 to 0.125... 066: dt: 0.2500, sse=929935.8, rms=3.280 (1.308%) 067: dt: 0.1250, sse=919018.4, rms=3.196 (2.583%) rms = 3.17, time step reduction 3 of 3 to 0.062... 068: dt: 0.1250, sse=915709.2, rms=3.173 (0.716%) positioning took 0.3 minutes writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.area.pial vertex spacing 1.01 +- 0.40 (0.07-->5.30) (max @ vno 41229 --> 40279) face area 0.41 +- 0.30 (0.00-->5.96) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 108714 vertices processed 25000 of 108714 vertices processed 50000 of 108714 vertices processed 75000 of 108714 vertices processed 100000 of 108714 vertices processed 0 of 108714 vertices processed 25000 of 108714 vertices processed 50000 of 108714 vertices processed 75000 of 108714 vertices processed 100000 of 108714 vertices processed thickness calculation complete, 30:175 truncations. 49842 vertices at 0 distance 91036 vertices at 1 distance 46416 vertices at 2 distance 13325 vertices at 3 distance 3654 vertices at 4 distance 1102 vertices at 5 distance 384 vertices at 6 distance 151 vertices at 7 distance 79 vertices at 8 distance 42 vertices at 9 distance 19 vertices at 10 distance 8 vertices at 11 distance 11 vertices at 12 distance 8 vertices at 13 distance 20 vertices at 14 distance 15 vertices at 15 distance 16 vertices at 16 distance 16 vertices at 17 distance 12 vertices at 18 distance 10 vertices at 19 distance 2 vertices at 20 distance writing curvature file /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.thickness positioning took 6.9 minutes #-------------------------------------------- #@# Surf Volume rh Tue Jul 31 12:43:09 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume pp_assurgent rh /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.volume masking with /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/label/rh.cortex.label Total face volume 149180 Total vertex volume 147203 (mask=0) #@# pp_assurgent rh 147203 vertexvol Done Started at Tue Jul 31 12:36:12 CDT 2018 Ended at Tue Jul 31 12:43:12 CDT 2018 #@#%# recon-all-run-time-hours 0.117 recon-all -s pp_assurgent finished without error at Tue Jul 31 12:43:12 CDT 2018 Tue Jul 31 12:43:12 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi rh -surfvolume #-------------------------------------------- #@# Surf Volume rh Tue Jul 31 12:43:12 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume pp_assurgent rh /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/surf/rh.volume masking with /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/label/rh.cortex.label Total face volume 149180 Total vertex volume 147203 (mask=0) #@# pp_assurgent rh 147203 vertexvol Done Started at Tue Jul 31 12:43:12 CDT 2018 Ended at Tue Jul 31 12:43:14 CDT 2018 #@#%# recon-all-run-time-hours 0.001 recon-all -s pp_assurgent finished without error at Tue Jul 31 12:43:14 CDT 2018 Tue Jul 31 12:43:14 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent /space/nnac/alzheimer_center/pubsw/freesurfer/bin/recon-all -s /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent -hemi lh -jacobian_white #-------------------------------------------- #@# Jacobian white lh Tue Jul 31 12:43:14 CDT 2018 /space/nnac/alzheimer_center/analyses/prosopagnosia/RECONS/pp_assurgent/scripts mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white.preaparc... mrisReadTriangleFile(../surf/lh.sphere.reg): surface doesn't match ../surf/lh.white.preaparc No such file or directory mrisReadTriangleFile failed. No such file or directory mris_jacobian: could not read target surface ../surf/lh.sphere.reg No such file or directory Linux picasso 3.10.0-862.9.1.el7.x86_64 #1 SMP Mon Jul 16 16:29:36 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux recon-all -s pp_assurgent exited with ERRORS at Tue Jul 31 12:43:15 CDT 2018 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting